Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_06045

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_06035 and HUW76_06040 are separated by 42 nucleotidesHUW76_06040 and HUW76_06045 are separated by 106 nucleotidesHUW76_06045 and HUW76_06050 are separated by 99 nucleotidesHUW76_06050 and HUW76_06055 are separated by 68 nucleotides HUW76_06035: HUW76_06035 - serine dehydratase subunit alpha family protein, at 1,234,283 to 1,235,566 _06035 HUW76_06040: HUW76_06040 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 1,235,609 to 1,236,451 _06040 HUW76_06045: HUW76_06045 - PLP-dependent aminotransferase family protein, at 1,236,558 to 1,237,967 _06045 HUW76_06050: HUW76_06050 - hypothetical protein, at 1,238,067 to 1,238,834 _06050 HUW76_06055: HUW76_06055 - glucosamine-6-phosphate deaminase, at 1,238,903 to 1,239,727 _06055 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.585 kb on + strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.593 kb on - strandat 1235.626 kb on - strandat 1235.626 kb on - strandat 1235.800 kb on - strand, within HUW76_06040at 1235.802 kb on + strand, within HUW76_06040at 1235.811 kb on - strand, within HUW76_06040at 1235.811 kb on - strand, within HUW76_06040at 1235.811 kb on - strand, within HUW76_06040at 1235.821 kb on + strand, within HUW76_06040at 1235.821 kb on + strand, within HUW76_06040at 1235.873 kb on + strand, within HUW76_06040at 1235.873 kb on + strand, within HUW76_06040at 1235.917 kb on + strand, within HUW76_06040at 1235.917 kb on + strand, within HUW76_06040at 1235.925 kb on - strand, within HUW76_06040at 1235.925 kb on - strand, within HUW76_06040at 1235.961 kb on + strand, within HUW76_06040at 1235.961 kb on + strand, within HUW76_06040at 1235.962 kb on - strand, within HUW76_06040at 1236.007 kb on - strand, within HUW76_06040at 1236.027 kb on + strand, within HUW76_06040at 1236.027 kb on + strand, within HUW76_06040at 1236.027 kb on + strand, within HUW76_06040at 1236.027 kb on + strand, within HUW76_06040at 1236.047 kb on - strand, within HUW76_06040at 1236.053 kb on - strand, within HUW76_06040at 1236.063 kb on - strand, within HUW76_06040at 1236.063 kb on - strand, within HUW76_06040at 1236.072 kb on - strand, within HUW76_06040at 1236.085 kb on - strand, within HUW76_06040at 1236.085 kb on - strand, within HUW76_06040at 1236.085 kb on - strand, within HUW76_06040at 1236.110 kb on + strand, within HUW76_06040at 1236.110 kb on + strand, within HUW76_06040at 1236.164 kb on + strand, within HUW76_06040at 1236.164 kb on + strand, within HUW76_06040at 1236.172 kb on - strand, within HUW76_06040at 1236.172 kb on - strand, within HUW76_06040at 1236.242 kb on + strand, within HUW76_06040at 1236.349 kb on - strand, within HUW76_06040at 1236.447 kb on - strandat 1236.616 kb on - strandat 1236.616 kb on - strandat 1236.665 kb on + strandat 1236.715 kb on - strand, within HUW76_06045at 1236.725 kb on - strand, within HUW76_06045at 1236.725 kb on - strand, within HUW76_06045at 1236.728 kb on + strand, within HUW76_06045at 1236.728 kb on + strand, within HUW76_06045at 1236.880 kb on + strand, within HUW76_06045at 1236.888 kb on - strand, within HUW76_06045at 1236.929 kb on + strand, within HUW76_06045at 1236.929 kb on + strand, within HUW76_06045at 1236.976 kb on + strand, within HUW76_06045at 1236.980 kb on + strand, within HUW76_06045at 1237.009 kb on + strand, within HUW76_06045at 1237.009 kb on + strand, within HUW76_06045at 1237.069 kb on - strand, within HUW76_06045at 1237.070 kb on - strand, within HUW76_06045at 1237.070 kb on - strand, within HUW76_06045at 1237.172 kb on - strand, within HUW76_06045at 1237.190 kb on + strand, within HUW76_06045at 1237.190 kb on + strand, within HUW76_06045at 1237.197 kb on - strand, within HUW76_06045at 1237.204 kb on + strand, within HUW76_06045at 1237.204 kb on + strand, within HUW76_06045at 1237.250 kb on + strand, within HUW76_06045at 1237.250 kb on + strand, within HUW76_06045at 1237.264 kb on + strand, within HUW76_06045at 1237.264 kb on + strand, within HUW76_06045at 1237.272 kb on - strand, within HUW76_06045at 1237.291 kb on - strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.374 kb on + strand, within HUW76_06045at 1237.394 kb on - strand, within HUW76_06045at 1237.446 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.743 kb on + strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.751 kb on - strand, within HUW76_06045at 1237.821 kb on + strand, within HUW76_06045at 1237.821 kb on + strand, within HUW76_06045at 1237.823 kb on + strand, within HUW76_06045at 1237.823 kb on + strand, within HUW76_06045at 1237.831 kb on + strandat 1237.831 kb on - strandat 1237.899 kb on - strandat 1237.899 kb on - strandat 1238.106 kb on + strandat 1238.106 kb on + strandat 1238.108 kb on - strandat 1238.123 kb on + strandat 1238.123 kb on + strandat 1238.206 kb on + strand, within HUW76_06050at 1238.206 kb on + strand, within HUW76_06050at 1238.286 kb on - strand, within HUW76_06050at 1238.286 kb on - strand, within HUW76_06050at 1238.366 kb on + strand, within HUW76_06050at 1238.366 kb on + strand, within HUW76_06050at 1238.416 kb on - strand, within HUW76_06050at 1238.417 kb on + strand, within HUW76_06050at 1238.427 kb on + strand, within HUW76_06050at 1238.564 kb on + strand, within HUW76_06050at 1238.605 kb on - strand, within HUW76_06050

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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1,235,585 + +1.9
1,235,585 + +1.4
1,235,585 + -1.7
1,235,585 + -1.4
1,235,585 + -1.5
1,235,585 + -2.4
1,235,585 + -1.5
1,235,585 + -0.5
1,235,585 + -1.2
1,235,585 + -0.7
1,235,585 + -1.5
1,235,585 + -2.8
1,235,585 + -0.7
1,235,585 + +0.1
1,235,585 + -2.2
1,235,585 + -1.0
1,235,585 + +0.9
1,235,585 + +0.9
1,235,585 + -1.9
1,235,585 + -0.8
1,235,585 + -1.0
1,235,585 + -0.3
1,235,585 + -3.1
1,235,585 + -0.3
1,235,585 + -2.2
1,235,585 + -0.0
1,235,585 + -2.0
1,235,585 + +0.9
1,235,593 - -1.7
1,235,593 - -0.7
1,235,593 - -0.3
1,235,593 - -1.6
1,235,593 - -0.2
1,235,593 - +1.6
1,235,593 - -0.6
1,235,626 - -3.5
1,235,626 - -1.6
1,235,800 - HUW76_06040 0.23 -5.0
1,235,802 + HUW76_06040 0.23 -1.2
1,235,811 - HUW76_06040 0.24 -2.6
1,235,811 - HUW76_06040 0.24 -3.2
1,235,811 - HUW76_06040 0.24 -2.8
1,235,821 + HUW76_06040 0.25 -2.6
1,235,821 + HUW76_06040 0.25 -3.7
1,235,873 + HUW76_06040 0.31 -1.1
1,235,873 + HUW76_06040 0.31 -1.8
1,235,917 + HUW76_06040 0.37 +1.5
1,235,917 + HUW76_06040 0.37 -1.6
1,235,925 - HUW76_06040 0.37 -2.2
1,235,925 - HUW76_06040 0.37 -1.8
1,235,961 + HUW76_06040 0.42 -1.9
1,235,961 + HUW76_06040 0.42 -1.7
1,235,962 - HUW76_06040 0.42 -3.8
1,236,007 - HUW76_06040 0.47 -4.5
1,236,027 + HUW76_06040 0.50 -2.8
1,236,027 + HUW76_06040 0.50 -1.5
1,236,027 + HUW76_06040 0.50 -2.8
1,236,027 + HUW76_06040 0.50 +0.3
1,236,047 - HUW76_06040 0.52 -4.2
1,236,053 - HUW76_06040 0.53 -4.1
1,236,063 - HUW76_06040 0.54 -2.8
1,236,063 - HUW76_06040 0.54 -5.8
1,236,072 - HUW76_06040 0.55 -3.5
1,236,085 - HUW76_06040 0.56 -3.4
1,236,085 - HUW76_06040 0.56 -3.4
1,236,085 - HUW76_06040 0.56 -4.5
1,236,110 + HUW76_06040 0.59 -0.9
1,236,110 + HUW76_06040 0.59 -2.0
1,236,164 + HUW76_06040 0.66 -2.3
1,236,164 + HUW76_06040 0.66 -2.0
1,236,172 - HUW76_06040 0.67 -4.1
1,236,172 - HUW76_06040 0.67 -1.1
1,236,242 + HUW76_06040 0.75 -3.0
1,236,349 - HUW76_06040 0.88 -4.6
1,236,447 - -2.0
1,236,616 - -2.8
1,236,616 - -2.8
1,236,665 + -4.6
1,236,715 - HUW76_06045 0.11 -4.4
1,236,725 - HUW76_06045 0.12 -2.2
1,236,725 - HUW76_06045 0.12 -2.3
1,236,728 + HUW76_06045 0.12 -1.3
1,236,728 + HUW76_06045 0.12 -4.3
1,236,880 + HUW76_06045 0.23 -2.8
1,236,888 - HUW76_06045 0.23 -5.6
1,236,929 + HUW76_06045 0.26 -3.6
1,236,929 + HUW76_06045 0.26 -1.1
1,236,976 + HUW76_06045 0.30 -2.8
1,236,980 + HUW76_06045 0.30 -2.6
1,237,009 + HUW76_06045 0.32 -3.7
1,237,009 + HUW76_06045 0.32 -3.2
1,237,069 - HUW76_06045 0.36 -3.7
1,237,070 - HUW76_06045 0.36 -0.2
1,237,070 - HUW76_06045 0.36 -3.9
1,237,172 - HUW76_06045 0.44 -3.9
1,237,190 + HUW76_06045 0.45 -2.2
1,237,190 + HUW76_06045 0.45 -3.4
1,237,197 - HUW76_06045 0.45 -3.9
1,237,204 + HUW76_06045 0.46 -2.9
1,237,204 + HUW76_06045 0.46 -4.2
1,237,250 + HUW76_06045 0.49 -2.9
1,237,250 + HUW76_06045 0.49 -2.7
1,237,264 + HUW76_06045 0.50 -4.3
1,237,264 + HUW76_06045 0.50 -3.5
1,237,272 - HUW76_06045 0.51 -2.9
1,237,291 - HUW76_06045 0.52 -3.8
1,237,374 + HUW76_06045 0.58 -3.5
1,237,374 + HUW76_06045 0.58 -3.4
1,237,374 + HUW76_06045 0.58 -3.6
1,237,374 + HUW76_06045 0.58 -3.1
1,237,374 + HUW76_06045 0.58 -3.2
1,237,374 + HUW76_06045 0.58 -2.8
1,237,394 - HUW76_06045 0.59 -2.1
1,237,446 + HUW76_06045 0.63 -4.7
1,237,743 + HUW76_06045 0.84 +1.2
1,237,743 + HUW76_06045 0.84 -5.1
1,237,743 + HUW76_06045 0.84 -3.2
1,237,743 + HUW76_06045 0.84 -2.0
1,237,743 + HUW76_06045 0.84 -2.2
1,237,743 + HUW76_06045 0.84 -5.1
1,237,743 + HUW76_06045 0.84 -4.5
1,237,743 + HUW76_06045 0.84 -2.8
1,237,743 + HUW76_06045 0.84 -3.0
1,237,743 + HUW76_06045 0.84 -2.9
1,237,751 - HUW76_06045 0.85 +0.3
1,237,751 - HUW76_06045 0.85 -3.0
1,237,751 - HUW76_06045 0.85 -0.8
1,237,751 - HUW76_06045 0.85 -3.2
1,237,751 - HUW76_06045 0.85 -3.0
1,237,751 - HUW76_06045 0.85 -0.1
1,237,751 - HUW76_06045 0.85 -3.2
1,237,751 - HUW76_06045 0.85 -2.4
1,237,751 - HUW76_06045 0.85 -0.9
1,237,821 + HUW76_06045 0.90 -3.1
1,237,821 + HUW76_06045 0.90 -4.3
1,237,823 + HUW76_06045 0.90 -4.6
1,237,823 + HUW76_06045 0.90 -4.1
1,237,831 + -1.5
1,237,831 - -4.0
1,237,899 - -3.6
1,237,899 - -2.0
1,238,106 + +0.1
1,238,106 + -0.2
1,238,108 - -0.4
1,238,123 + +1.0
1,238,123 + +1.0
1,238,206 + HUW76_06050 0.18 +0.4
1,238,206 + HUW76_06050 0.18 +1.3
1,238,286 - HUW76_06050 0.29 +0.9
1,238,286 - HUW76_06050 0.29 -2.2
1,238,366 + HUW76_06050 0.39 -0.6
1,238,366 + HUW76_06050 0.39 +1.2
1,238,416 - HUW76_06050 0.45 +0.7
1,238,417 + HUW76_06050 0.46 -0.3
1,238,427 + HUW76_06050 0.47 +0.5
1,238,564 + HUW76_06050 0.65 +0.3
1,238,605 - HUW76_06050 0.70 +0.5

Or see this region's nucleotide sequence