Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04790

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04785 and HUW76_04790 are separated by 224 nucleotidesHUW76_04790 and HUW76_04795 are separated by 70 nucleotidesHUW76_04795 and HUW76_04800 are separated by 398 nucleotides HUW76_04785: HUW76_04785 - urocanate hydratase, at 964,714 to 966,735 _04785 HUW76_04790: HUW76_04790 - sodium/glutamate symporter, at 966,960 to 968,159 _04790 HUW76_04795: HUW76_04795 - hypothetical protein, at 968,230 to 968,643 _04795 HUW76_04800: HUW76_04800 - helix-turn-helix transcriptional regulator, at 969,042 to 969,641 _04800 Position (kb) 966 967 968 969Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 965.960 kb on + strand, within HUW76_04785at 966.065 kb on + strand, within HUW76_04785at 966.075 kb on + strand, within HUW76_04785at 966.083 kb on + strand, within HUW76_04785at 966.178 kb on + strand, within HUW76_04785at 966.188 kb on + strand, within HUW76_04785at 966.188 kb on + strand, within HUW76_04785at 966.245 kb on + strand, within HUW76_04785at 966.253 kb on + strand, within HUW76_04785at 966.263 kb on + strand, within HUW76_04785at 966.322 kb on + strand, within HUW76_04785at 966.337 kb on - strand, within HUW76_04785at 966.338 kb on + strand, within HUW76_04785at 966.338 kb on + strand, within HUW76_04785at 966.339 kb on + strand, within HUW76_04785at 966.346 kb on - strand, within HUW76_04785at 966.358 kb on + strand, within HUW76_04785at 966.358 kb on + strand, within HUW76_04785at 966.366 kb on - strand, within HUW76_04785at 966.391 kb on + strand, within HUW76_04785at 966.421 kb on + strand, within HUW76_04785at 966.459 kb on - strand, within HUW76_04785at 966.459 kb on - strand, within HUW76_04785at 966.469 kb on + strand, within HUW76_04785at 966.469 kb on + strand, within HUW76_04785at 966.477 kb on - strand, within HUW76_04785at 966.516 kb on + strand, within HUW76_04785at 966.537 kb on + strandat 966.567 kb on + strandat 966.567 kb on + strandat 966.568 kb on + strandat 966.568 kb on + strandat 966.568 kb on + strandat 966.568 kb on + strandat 966.568 kb on + strandat 966.574 kb on - strandat 966.596 kb on - strandat 966.596 kb on - strandat 966.646 kb on + strandat 966.654 kb on - strandat 966.655 kb on + strandat 966.687 kb on + strandat 966.687 kb on + strandat 966.701 kb on + strandat 966.709 kb on - strandat 966.709 kb on - strandat 967.016 kb on + strandat 967.080 kb on + strand, within HUW76_04790at 967.088 kb on - strand, within HUW76_04790at 967.121 kb on + strand, within HUW76_04790at 967.121 kb on + strand, within HUW76_04790at 967.187 kb on + strand, within HUW76_04790at 967.187 kb on + strand, within HUW76_04790at 967.233 kb on + strand, within HUW76_04790at 967.239 kb on - strand, within HUW76_04790at 967.245 kb on - strand, within HUW76_04790at 967.253 kb on + strand, within HUW76_04790at 967.253 kb on + strand, within HUW76_04790at 967.256 kb on - strand, within HUW76_04790at 967.289 kb on + strand, within HUW76_04790at 967.291 kb on + strand, within HUW76_04790at 967.291 kb on + strand, within HUW76_04790at 967.305 kb on + strand, within HUW76_04790at 967.325 kb on + strand, within HUW76_04790at 967.362 kb on - strand, within HUW76_04790at 967.458 kb on + strand, within HUW76_04790at 967.458 kb on + strand, within HUW76_04790at 967.465 kb on - strand, within HUW76_04790at 967.465 kb on - strand, within HUW76_04790at 967.488 kb on - strand, within HUW76_04790at 967.488 kb on - strand, within HUW76_04790at 967.489 kb on - strand, within HUW76_04790at 967.489 kb on - strand, within HUW76_04790at 967.507 kb on - strand, within HUW76_04790at 967.507 kb on - strand, within HUW76_04790at 967.604 kb on + strand, within HUW76_04790at 967.604 kb on + strand, within HUW76_04790at 967.604 kb on + strand, within HUW76_04790at 967.607 kb on - strand, within HUW76_04790at 967.818 kb on + strand, within HUW76_04790at 967.818 kb on + strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.826 kb on - strand, within HUW76_04790at 967.901 kb on - strand, within HUW76_04790at 967.959 kb on + strand, within HUW76_04790at 967.961 kb on + strand, within HUW76_04790at 967.974 kb on - strand, within HUW76_04790at 967.976 kb on + strand, within HUW76_04790at 967.976 kb on - strand, within HUW76_04790at 967.984 kb on - strand, within HUW76_04790at 968.082 kb on + strandat 968.082 kb on + strandat 968.100 kb on - strandat 968.344 kb on + strand, within HUW76_04795at 968.352 kb on - strand, within HUW76_04795at 968.385 kb on - strand, within HUW76_04795at 968.385 kb on - strand, within HUW76_04795at 968.813 kb on - strandat 968.817 kb on + strandat 968.820 kb on - strandat 968.823 kb on - strandat 968.825 kb on + strandat 968.825 kb on + strandat 968.825 kb on + strandat 968.833 kb on - strandat 969.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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965,960 + HUW76_04785 0.62 -0.8
966,065 + HUW76_04785 0.67 -4.2
966,075 + HUW76_04785 0.67 -2.9
966,083 + HUW76_04785 0.68 -1.0
966,178 + HUW76_04785 0.72 -0.7
966,188 + HUW76_04785 0.73 -0.5
966,188 + HUW76_04785 0.73 -1.9
966,245 + HUW76_04785 0.76 -2.7
966,253 + HUW76_04785 0.76 -1.9
966,263 + HUW76_04785 0.77 -2.9
966,322 + HUW76_04785 0.80 -1.2
966,337 - HUW76_04785 0.80 -1.9
966,338 + HUW76_04785 0.80 -3.6
966,338 + HUW76_04785 0.80 -1.3
966,339 + HUW76_04785 0.80 -1.9
966,346 - HUW76_04785 0.81 -1.2
966,358 + HUW76_04785 0.81 -1.3
966,358 + HUW76_04785 0.81 -2.6
966,366 - HUW76_04785 0.82 +0.1
966,391 + HUW76_04785 0.83 -2.8
966,421 + HUW76_04785 0.84 -1.1
966,459 - HUW76_04785 0.86 -2.2
966,459 - HUW76_04785 0.86 -0.2
966,469 + HUW76_04785 0.87 -3.0
966,469 + HUW76_04785 0.87 -2.7
966,477 - HUW76_04785 0.87 -2.2
966,516 + HUW76_04785 0.89 -3.5
966,537 + -2.6
966,567 + -3.3
966,567 + -0.8
966,568 + -0.8
966,568 + -2.6
966,568 + -3.6
966,568 + -2.2
966,568 + -1.3
966,574 - -1.8
966,596 - -0.1
966,596 - -0.7
966,646 + -2.5
966,654 - -1.0
966,655 + -1.9
966,687 + -3.0
966,687 + -1.2
966,701 + -3.0
966,709 - -1.4
966,709 - -3.1
967,016 + -4.9
967,080 + HUW76_04790 0.10 -4.3
967,088 - HUW76_04790 0.11 -2.1
967,121 + HUW76_04790 0.13 -2.9
967,121 + HUW76_04790 0.13 -3.5
967,187 + HUW76_04790 0.19 -3.5
967,187 + HUW76_04790 0.19 -4.0
967,233 + HUW76_04790 0.23 -3.2
967,239 - HUW76_04790 0.23 -1.2
967,245 - HUW76_04790 0.24 -0.7
967,253 + HUW76_04790 0.24 -2.6
967,253 + HUW76_04790 0.24 -3.9
967,256 - HUW76_04790 0.25 -0.7
967,289 + HUW76_04790 0.27 -5.7
967,291 + HUW76_04790 0.28 -2.0
967,291 + HUW76_04790 0.28 -1.3
967,305 + HUW76_04790 0.29 -4.1
967,325 + HUW76_04790 0.30 -2.9
967,362 - HUW76_04790 0.34 -1.1
967,458 + HUW76_04790 0.41 -3.4
967,458 + HUW76_04790 0.41 -1.4
967,465 - HUW76_04790 0.42 -3.5
967,465 - HUW76_04790 0.42 -2.7
967,488 - HUW76_04790 0.44 -3.5
967,488 - HUW76_04790 0.44 -3.1
967,489 - HUW76_04790 0.44 -0.2
967,489 - HUW76_04790 0.44 +0.1
967,507 - HUW76_04790 0.46 -0.4
967,507 - HUW76_04790 0.46 -3.3
967,604 + HUW76_04790 0.54 -5.1
967,604 + HUW76_04790 0.54 -5.6
967,604 + HUW76_04790 0.54 -2.7
967,607 - HUW76_04790 0.54 -2.6
967,818 + HUW76_04790 0.71 -4.3
967,818 + HUW76_04790 0.71 -3.9
967,826 - HUW76_04790 0.72 -3.9
967,826 - HUW76_04790 0.72 -3.9
967,826 - HUW76_04790 0.72 -3.6
967,826 - HUW76_04790 0.72 -1.9
967,826 - HUW76_04790 0.72 -3.1
967,826 - HUW76_04790 0.72 -3.4
967,826 - HUW76_04790 0.72 -3.4
967,826 - HUW76_04790 0.72 -1.5
967,901 - HUW76_04790 0.78 -1.7
967,959 + HUW76_04790 0.83 -4.6
967,961 + HUW76_04790 0.83 -3.9
967,974 - HUW76_04790 0.84 -4.3
967,976 + HUW76_04790 0.85 -5.6
967,976 - HUW76_04790 0.85 -0.9
967,984 - HUW76_04790 0.85 -2.5
968,082 + -3.3
968,082 + -4.1
968,100 - -3.0
968,344 + HUW76_04795 0.28 -0.5
968,352 - HUW76_04795 0.29 -0.9
968,385 - HUW76_04795 0.37 +0.6
968,385 - HUW76_04795 0.37 +0.4
968,813 - -0.5
968,817 + -5.1
968,820 - -0.3
968,823 - -0.1
968,825 + -4.7
968,825 + -3.4
968,825 + -4.7
968,833 - -1.8
969,044 + -4.0

Or see this region's nucleotide sequence