Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04415

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04405 and HUW76_04410 are separated by 66 nucleotidesHUW76_04410 and HUW76_04415 are separated by 16 nucleotidesHUW76_04415 and HUW76_04420 overlap by 14 nucleotidesHUW76_04420 and HUW76_04425 overlap by 4 nucleotides HUW76_04405: HUW76_04405 - murein biosynthesis integral membrane protein MurJ, at 889,630 to 891,099 _04405 HUW76_04410: HUW76_04410 - hypothetical protein, at 891,166 to 891,843 _04410 HUW76_04415: HUW76_04415 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 891,860 to 893,080 _04415 HUW76_04420: HUW76_04420 - chromate transporter, at 893,067 to 893,627 _04420 HUW76_04425: HUW76_04425 - chromate transporter, at 893,624 to 894,154 _04425 Position (kb) 891 892 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 891.046 kb on + strandat 891.169 kb on + strandat 891.169 kb on + strandat 891.280 kb on + strand, within HUW76_04410at 891.281 kb on + strand, within HUW76_04410at 891.281 kb on + strand, within HUW76_04410at 891.765 kb on + strand, within HUW76_04410at 891.765 kb on + strand, within HUW76_04410at 891.784 kb on + strandat 891.819 kb on + strandat 891.819 kb on + strandat 893.135 kb on + strand, within HUW76_04420at 893.148 kb on - strand, within HUW76_04420at 893.148 kb on - strand, within HUW76_04420at 893.194 kb on + strand, within HUW76_04420at 893.213 kb on + strand, within HUW76_04420at 893.220 kb on + strand, within HUW76_04420at 893.220 kb on + strand, within HUW76_04420at 893.239 kb on - strand, within HUW76_04420at 893.244 kb on - strand, within HUW76_04420at 893.272 kb on - strand, within HUW76_04420at 893.274 kb on + strand, within HUW76_04420at 893.276 kb on + strand, within HUW76_04420at 893.276 kb on + strand, within HUW76_04420at 893.284 kb on - strand, within HUW76_04420at 893.358 kb on + strand, within HUW76_04420at 893.358 kb on + strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.421 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.422 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.427 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.466 kb on - strand, within HUW76_04420at 893.576 kb on - strandat 893.576 kb on - strandat 893.658 kb on + strandat 893.658 kb on + strandat 893.688 kb on + strand, within HUW76_04425at 893.688 kb on + strand, within HUW76_04425at 893.696 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.708 kb on - strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.718 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.824 kb on + strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.832 kb on - strand, within HUW76_04425at 893.842 kb on - strand, within HUW76_04425at 893.847 kb on + strand, within HUW76_04425at 893.871 kb on + strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.914 kb on - strand, within HUW76_04425at 893.961 kb on + strand, within HUW76_04425at 893.968 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 893.981 kb on - strand, within HUW76_04425at 894.062 kb on + strand, within HUW76_04425

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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891,046 + -2.7
891,169 + -3.2
891,169 + -3.9
891,280 + HUW76_04410 0.17 -4.1
891,281 + HUW76_04410 0.17 -3.1
891,281 + HUW76_04410 0.17 -3.1
891,765 + HUW76_04410 0.88 -2.5
891,765 + HUW76_04410 0.88 -2.6
891,784 + -4.1
891,819 + -2.4
891,819 + -1.5
893,135 + HUW76_04420 0.12 -2.2
893,148 - HUW76_04420 0.14 -0.4
893,148 - HUW76_04420 0.14 -2.3
893,194 + HUW76_04420 0.23 -0.8
893,213 + HUW76_04420 0.26 -0.5
893,220 + HUW76_04420 0.27 -0.1
893,220 + HUW76_04420 0.27 -0.4
893,239 - HUW76_04420 0.31 -2.0
893,244 - HUW76_04420 0.32 +0.9
893,272 - HUW76_04420 0.37 -1.0
893,274 + HUW76_04420 0.37 -0.5
893,276 + HUW76_04420 0.37 +1.3
893,276 + HUW76_04420 0.37 -0.4
893,284 - HUW76_04420 0.39 -2.0
893,358 + HUW76_04420 0.52 -2.3
893,358 + HUW76_04420 0.52 +0.7
893,421 - HUW76_04420 0.63 -0.6
893,421 - HUW76_04420 0.63 -0.7
893,422 - HUW76_04420 0.63 -0.1
893,422 - HUW76_04420 0.63 +0.1
893,427 - HUW76_04420 0.64 -1.7
893,427 - HUW76_04420 0.64 -0.4
893,466 - HUW76_04420 0.71 -2.8
893,466 - HUW76_04420 0.71 +0.1
893,576 - -1.6
893,576 - -0.6
893,658 + +2.0
893,658 + -0.1
893,688 + HUW76_04425 0.12 -0.1
893,688 + HUW76_04425 0.12 -1.2
893,696 - HUW76_04425 0.14 +0.0
893,708 - HUW76_04425 0.16 +0.5
893,708 - HUW76_04425 0.16 -1.5
893,718 + HUW76_04425 0.18 -1.1
893,718 + HUW76_04425 0.18 -0.7
893,824 + HUW76_04425 0.38 +0.4
893,824 + HUW76_04425 0.38 -0.1
893,824 + HUW76_04425 0.38 -0.2
893,832 - HUW76_04425 0.39 +0.7
893,832 - HUW76_04425 0.39 +0.7
893,832 - HUW76_04425 0.39 -1.0
893,832 - HUW76_04425 0.39 -1.2
893,832 - HUW76_04425 0.39 +1.2
893,842 - HUW76_04425 0.41 -0.9
893,847 + HUW76_04425 0.42 -0.1
893,871 + HUW76_04425 0.47 -1.6
893,914 - HUW76_04425 0.55 -2.0
893,914 - HUW76_04425 0.55 +0.5
893,914 - HUW76_04425 0.55 -0.1
893,961 + HUW76_04425 0.63 -1.9
893,968 - HUW76_04425 0.65 +0.6
893,981 - HUW76_04425 0.67 -0.2
893,981 - HUW76_04425 0.67 +1.1
894,062 + HUW76_04425 0.82 +0.7

Or see this region's nucleotide sequence