Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04170

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04165 and HUW76_04170 are separated by 227 nucleotidesHUW76_04170 and HUW76_04175 overlap by 4 nucleotidesHUW76_04175 and HUW76_04180 are separated by 3 nucleotides HUW76_04165: HUW76_04165 - DUF445 family protein, at 835,717 to 836,319 _04165 HUW76_04170: HUW76_04170 - Holliday junction branch migration DNA helicase RuvB, at 836,547 to 837,545 _04170 HUW76_04175: HUW76_04175 - Rrf2 family transcriptional regulator, at 837,542 to 837,973 _04175 HUW76_04180: HUW76_04180 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 837,977 to 838,684 _04180 Position (kb) 836 837 838Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 835.590 kb on + strandat 835.590 kb on + strandat 835.690 kb on + strandat 835.690 kb on + strandat 835.725 kb on + strandat 835.841 kb on + strand, within HUW76_04165at 835.841 kb on + strand, within HUW76_04165at 835.841 kb on + strand, within HUW76_04165at 835.910 kb on + strand, within HUW76_04165at 835.967 kb on + strand, within HUW76_04165at 835.967 kb on + strand, within HUW76_04165at 835.981 kb on + strand, within HUW76_04165at 835.981 kb on + strand, within HUW76_04165at 835.992 kb on + strand, within HUW76_04165at 835.992 kb on + strand, within HUW76_04165at 836.037 kb on + strand, within HUW76_04165at 836.037 kb on + strand, within HUW76_04165at 836.250 kb on + strand, within HUW76_04165at 836.263 kb on + strandat 836.282 kb on + strandat 836.530 kb on + strandat 836.530 kb on + strandat 836.531 kb on + strandat 836.531 kb on + strandat 836.542 kb on + strandat 836.554 kb on + strandat 836.554 kb on + strandat 836.627 kb on + strandat 836.888 kb on + strand, within HUW76_04170at 836.891 kb on + strand, within HUW76_04170at 836.891 kb on + strand, within HUW76_04170at 836.891 kb on + strand, within HUW76_04170at 836.896 kb on + strand, within HUW76_04170at 837.044 kb on + strand, within HUW76_04170at 837.045 kb on + strand, within HUW76_04170at 837.045 kb on + strand, within HUW76_04170at 837.058 kb on + strand, within HUW76_04170at 837.058 kb on + strand, within HUW76_04170at 837.058 kb on + strand, within HUW76_04170at 837.155 kb on + strand, within HUW76_04170at 837.264 kb on + strand, within HUW76_04170at 837.264 kb on + strand, within HUW76_04170at 837.264 kb on + strand, within HUW76_04170at 837.362 kb on + strand, within HUW76_04170at 837.362 kb on + strand, within HUW76_04170at 837.362 kb on + strand, within HUW76_04170at 837.443 kb on + strand, within HUW76_04170at 837.499 kb on + strandat 837.499 kb on + strandat 837.499 kb on + strandat 837.499 kb on + strandat 837.510 kb on + strandat 837.510 kb on + strandat 837.510 kb on + strandat 837.540 kb on + strandat 837.560 kb on + strandat 837.583 kb on + strandat 837.583 kb on + strandat 837.586 kb on - strand, within HUW76_04175at 837.644 kb on + strand, within HUW76_04175at 837.644 kb on + strand, within HUW76_04175at 837.644 kb on + strand, within HUW76_04175at 837.644 kb on + strand, within HUW76_04175at 837.644 kb on + strand, within HUW76_04175at 837.734 kb on + strand, within HUW76_04175at 837.734 kb on + strand, within HUW76_04175at 837.736 kb on + strand, within HUW76_04175at 837.736 kb on + strand, within HUW76_04175at 837.742 kb on - strand, within HUW76_04175at 837.789 kb on + strand, within HUW76_04175at 837.835 kb on + strand, within HUW76_04175at 837.835 kb on + strand, within HUW76_04175at 837.842 kb on + strand, within HUW76_04175at 837.842 kb on + strand, within HUW76_04175at 837.984 kb on + strandat 837.984 kb on + strandat 837.984 kb on + strandat 838.038 kb on + strandat 838.083 kb on + strand, within HUW76_04180at 838.083 kb on + strand, within HUW76_04180at 838.101 kb on + strand, within HUW76_04180at 838.205 kb on + strand, within HUW76_04180at 838.266 kb on + strand, within HUW76_04180at 838.266 kb on + strand, within HUW76_04180at 838.334 kb on + strand, within HUW76_04180at 838.334 kb on + strand, within HUW76_04180at 838.362 kb on + strand, within HUW76_04180at 838.387 kb on + strand, within HUW76_04180at 838.449 kb on + strand, within HUW76_04180at 838.509 kb on + strand, within HUW76_04180

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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835,590 + +0.2
835,590 + +2.2
835,690 + +1.2
835,690 + +1.4
835,725 + +2.1
835,841 + HUW76_04165 0.21 +1.8
835,841 + HUW76_04165 0.21 +2.0
835,841 + HUW76_04165 0.21 +1.5
835,910 + HUW76_04165 0.32 +1.1
835,967 + HUW76_04165 0.41 +1.3
835,967 + HUW76_04165 0.41 +1.6
835,981 + HUW76_04165 0.44 +1.4
835,981 + HUW76_04165 0.44 +2.5
835,992 + HUW76_04165 0.46 +2.1
835,992 + HUW76_04165 0.46 +2.1
836,037 + HUW76_04165 0.53 +2.0
836,037 + HUW76_04165 0.53 +1.2
836,250 + HUW76_04165 0.88 +1.0
836,263 + +1.5
836,282 + +2.1
836,530 + -0.1
836,530 + -3.1
836,531 + -2.3
836,531 + -4.3
836,542 + -3.3
836,554 + -2.6
836,554 + +0.4
836,627 + -3.3
836,888 + HUW76_04170 0.34 -2.2
836,891 + HUW76_04170 0.34 -0.0
836,891 + HUW76_04170 0.34 -0.0
836,891 + HUW76_04170 0.34 -3.4
836,896 + HUW76_04170 0.35 -1.3
837,044 + HUW76_04170 0.50 -1.9
837,045 + HUW76_04170 0.50 -2.8
837,045 + HUW76_04170 0.50 -2.3
837,058 + HUW76_04170 0.51 -1.6
837,058 + HUW76_04170 0.51 -2.5
837,058 + HUW76_04170 0.51 -2.5
837,155 + HUW76_04170 0.61 -3.0
837,264 + HUW76_04170 0.72 -2.8
837,264 + HUW76_04170 0.72 -1.8
837,264 + HUW76_04170 0.72 -1.4
837,362 + HUW76_04170 0.82 -0.7
837,362 + HUW76_04170 0.82 -1.7
837,362 + HUW76_04170 0.82 -0.4
837,443 + HUW76_04170 0.90 -0.6
837,499 + -2.8
837,499 + -1.5
837,499 + -1.8
837,499 + -1.1
837,510 + -1.4
837,510 + -1.7
837,510 + -2.6
837,540 + -0.5
837,560 + -4.1
837,583 + -1.5
837,583 + -2.6
837,586 - HUW76_04175 0.10 -0.7
837,644 + HUW76_04175 0.24 -5.3
837,644 + HUW76_04175 0.24 -4.0
837,644 + HUW76_04175 0.24 -1.4
837,644 + HUW76_04175 0.24 -2.6
837,644 + HUW76_04175 0.24 -3.5
837,734 + HUW76_04175 0.44 -1.4
837,734 + HUW76_04175 0.44 +0.6
837,736 + HUW76_04175 0.45 -1.5
837,736 + HUW76_04175 0.45 -1.7
837,742 - HUW76_04175 0.46 -2.0
837,789 + HUW76_04175 0.57 -0.9
837,835 + HUW76_04175 0.68 -2.9
837,835 + HUW76_04175 0.68 -0.8
837,842 + HUW76_04175 0.69 -1.6
837,842 + HUW76_04175 0.69 +0.8
837,984 + -0.2
837,984 + -1.8
837,984 + -1.0
838,038 + -1.3
838,083 + HUW76_04180 0.15 -0.6
838,083 + HUW76_04180 0.15 -1.0
838,101 + HUW76_04180 0.18 -3.7
838,205 + HUW76_04180 0.32 -0.8
838,266 + HUW76_04180 0.41 -1.7
838,266 + HUW76_04180 0.41 -0.9
838,334 + HUW76_04180 0.50 -0.0
838,334 + HUW76_04180 0.50 -1.3
838,362 + HUW76_04180 0.54 -0.3
838,387 + HUW76_04180 0.58 -1.6
838,449 + HUW76_04180 0.67 -0.4
838,509 + HUW76_04180 0.75 -0.9

Or see this region's nucleotide sequence