Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04050

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04045 and HUW76_04050 are separated by 14 nucleotidesHUW76_04050 and HUW76_04055 are separated by 1 nucleotidesHUW76_04055 and HUW76_04060 are separated by 9 nucleotides HUW76_04045: HUW76_04045 - polysaccharide deacetylase family protein, at 813,713 to 814,795 _04045 HUW76_04050: HUW76_04050 - glycosyltransferase, at 814,810 to 815,541 _04050 HUW76_04055: HUW76_04055 - lipopolysaccharide biosynthesis protein, at 815,543 to 816,265 _04055 HUW76_04060: HUW76_04060 - hypothetical protein, at 816,275 to 816,919 _04060 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 813.945 kb on + strand, within HUW76_04045at 813.945 kb on + strand, within HUW76_04045at 813.947 kb on + strand, within HUW76_04045at 813.955 kb on + strand, within HUW76_04045at 813.955 kb on + strand, within HUW76_04045at 813.955 kb on + strand, within HUW76_04045at 814.018 kb on - strand, within HUW76_04045at 814.122 kb on + strand, within HUW76_04045at 814.145 kb on + strand, within HUW76_04045at 814.299 kb on + strand, within HUW76_04045at 814.299 kb on + strand, within HUW76_04045at 814.314 kb on + strand, within HUW76_04045at 814.322 kb on + strand, within HUW76_04045at 814.322 kb on + strand, within HUW76_04045at 814.327 kb on + strand, within HUW76_04045at 814.327 kb on + strand, within HUW76_04045at 814.419 kb on + strand, within HUW76_04045at 814.438 kb on + strand, within HUW76_04045at 814.443 kb on + strand, within HUW76_04045at 814.509 kb on + strand, within HUW76_04045at 814.529 kb on + strand, within HUW76_04045at 814.534 kb on + strand, within HUW76_04045at 814.534 kb on + strand, within HUW76_04045at 814.548 kb on + strand, within HUW76_04045at 814.548 kb on + strand, within HUW76_04045at 814.548 kb on + strand, within HUW76_04045at 814.584 kb on + strand, within HUW76_04045at 814.584 kb on + strand, within HUW76_04045at 814.653 kb on + strand, within HUW76_04045at 814.653 kb on + strand, within HUW76_04045at 814.795 kb on + strandat 814.795 kb on + strandat 814.802 kb on + strandat 814.802 kb on + strandat 814.848 kb on + strandat 814.864 kb on + strandat 814.864 kb on + strandat 814.918 kb on + strand, within HUW76_04050at 815.024 kb on + strand, within HUW76_04050at 815.024 kb on + strand, within HUW76_04050at 815.024 kb on + strand, within HUW76_04050at 815.024 kb on + strand, within HUW76_04050at 815.032 kb on + strand, within HUW76_04050at 815.032 kb on + strand, within HUW76_04050at 815.052 kb on + strand, within HUW76_04050at 815.068 kb on + strand, within HUW76_04050at 815.162 kb on + strand, within HUW76_04050at 815.162 kb on + strand, within HUW76_04050at 815.220 kb on + strand, within HUW76_04050at 815.220 kb on + strand, within HUW76_04050at 815.364 kb on + strand, within HUW76_04050at 815.387 kb on + strand, within HUW76_04050at 815.392 kb on + strand, within HUW76_04050at 815.452 kb on + strand, within HUW76_04050at 815.452 kb on + strand, within HUW76_04050at 815.452 kb on + strand, within HUW76_04050at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.920 kb on + strand, within HUW76_04055at 815.944 kb on + strand, within HUW76_04055at 815.989 kb on + strand, within HUW76_04055at 815.989 kb on + strand, within HUW76_04055at 816.115 kb on + strand, within HUW76_04055at 816.115 kb on + strand, within HUW76_04055at 816.115 kb on + strand, within HUW76_04055at 816.136 kb on + strand, within HUW76_04055at 816.244 kb on + strandat 816.244 kb on + strandat 816.298 kb on + strandat 816.459 kb on + strand, within HUW76_04060at 816.459 kb on + strand, within HUW76_04060at 816.461 kb on + strand, within HUW76_04060at 816.461 kb on + strand, within HUW76_04060

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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813,945 + HUW76_04045 0.21 +2.9
813,945 + HUW76_04045 0.21 +4.5
813,947 + HUW76_04045 0.22 +4.1
813,955 + HUW76_04045 0.22 -1.7
813,955 + HUW76_04045 0.22 +4.4
813,955 + HUW76_04045 0.22 +3.9
814,018 - HUW76_04045 0.28 +0.6
814,122 + HUW76_04045 0.38 +4.1
814,145 + HUW76_04045 0.40 +4.0
814,299 + HUW76_04045 0.54 -1.2
814,299 + HUW76_04045 0.54 +5.1
814,314 + HUW76_04045 0.55 +2.3
814,322 + HUW76_04045 0.56 +4.7
814,322 + HUW76_04045 0.56 +4.3
814,327 + HUW76_04045 0.57 +4.5
814,327 + HUW76_04045 0.57 +0.4
814,419 + HUW76_04045 0.65 +5.1
814,438 + HUW76_04045 0.67 +4.3
814,443 + HUW76_04045 0.67 +3.5
814,509 + HUW76_04045 0.73 +4.0
814,529 + HUW76_04045 0.75 +4.1
814,534 + HUW76_04045 0.76 +5.1
814,534 + HUW76_04045 0.76 +2.4
814,548 + HUW76_04045 0.77 +4.5
814,548 + HUW76_04045 0.77 +4.4
814,548 + HUW76_04045 0.77 +4.4
814,584 + HUW76_04045 0.80 +4.1
814,584 + HUW76_04045 0.80 +2.5
814,653 + HUW76_04045 0.87 -1.9
814,653 + HUW76_04045 0.87 +5.0
814,795 + +2.5
814,795 + +2.4
814,802 + -3.3
814,802 + -1.0
814,848 + -2.5
814,864 + -2.2
814,864 + -0.3
814,918 + HUW76_04050 0.15 -1.0
815,024 + HUW76_04050 0.29 -2.1
815,024 + HUW76_04050 0.29 +0.2
815,024 + HUW76_04050 0.29 -1.8
815,024 + HUW76_04050 0.29 -0.4
815,032 + HUW76_04050 0.30 -2.5
815,032 + HUW76_04050 0.30 -3.0
815,052 + HUW76_04050 0.33 -2.7
815,068 + HUW76_04050 0.35 -1.5
815,162 + HUW76_04050 0.48 -1.7
815,162 + HUW76_04050 0.48 -1.4
815,220 + HUW76_04050 0.56 -2.3
815,220 + HUW76_04050 0.56 -1.9
815,364 + HUW76_04050 0.76 -1.3
815,387 + HUW76_04050 0.79 -0.6
815,392 + HUW76_04050 0.80 -2.6
815,452 + HUW76_04050 0.88 -0.6
815,452 + HUW76_04050 0.88 -0.7
815,452 + HUW76_04050 0.88 -1.7
815,920 + HUW76_04055 0.52 +7.1
815,920 + HUW76_04055 0.52 +7.5
815,920 + HUW76_04055 0.52 +7.7
815,920 + HUW76_04055 0.52 +7.4
815,920 + HUW76_04055 0.52 +6.6
815,920 + HUW76_04055 0.52 +7.1
815,920 + HUW76_04055 0.52 +7.6
815,920 + HUW76_04055 0.52 +7.0
815,944 + HUW76_04055 0.55 +7.3
815,989 + HUW76_04055 0.62 +8.0
815,989 + HUW76_04055 0.62 +8.0
816,115 + HUW76_04055 0.79 +7.3
816,115 + HUW76_04055 0.79 +7.8
816,115 + HUW76_04055 0.79 +5.7
816,136 + HUW76_04055 0.82 +8.0
816,244 + +4.0
816,244 + +8.3
816,298 + +5.6
816,459 + HUW76_04060 0.29 +4.7
816,459 + HUW76_04060 0.29 +6.3
816,461 + HUW76_04060 0.29 +5.2
816,461 + HUW76_04060 0.29 +6.8

Or see this region's nucleotide sequence