Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03890

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03885 and HUW76_03890 are separated by 21 nucleotidesHUW76_03890 and HUW76_03895 are separated by 194 nucleotides HUW76_03885: HUW76_03885 - TolC family protein, at 781,138 to 782,409 _03885 HUW76_03890: HUW76_03890 - TetR/AcrR family transcriptional regulator, at 782,431 to 783,066 _03890 HUW76_03895: HUW76_03895 - signal peptide peptidase SppA, at 783,261 to 784,997 _03895 Position (kb) 782 783 784Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 781.446 kb on + strand, within HUW76_03885at 781.446 kb on + strand, within HUW76_03885at 781.446 kb on + strand, within HUW76_03885at 781.456 kb on + strand, within HUW76_03885at 781.456 kb on + strand, within HUW76_03885at 781.456 kb on - strand, within HUW76_03885at 781.456 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.531 kb on - strand, within HUW76_03885at 781.554 kb on - strand, within HUW76_03885at 781.574 kb on + strand, within HUW76_03885at 781.576 kb on - strand, within HUW76_03885at 781.576 kb on - strand, within HUW76_03885at 781.608 kb on + strand, within HUW76_03885at 781.680 kb on + strand, within HUW76_03885at 781.728 kb on + strand, within HUW76_03885at 781.728 kb on + strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.744 kb on + strand, within HUW76_03885at 781.744 kb on + strand, within HUW76_03885at 781.767 kb on + strand, within HUW76_03885at 781.767 kb on + strand, within HUW76_03885at 781.808 kb on + strand, within HUW76_03885at 781.808 kb on + strand, within HUW76_03885at 781.813 kb on - strand, within HUW76_03885at 781.887 kb on + strand, within HUW76_03885at 781.947 kb on + strand, within HUW76_03885at 781.947 kb on + strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 782.072 kb on - strand, within HUW76_03885at 782.111 kb on + strand, within HUW76_03885at 782.111 kb on + strand, within HUW76_03885at 782.133 kb on + strand, within HUW76_03885at 782.134 kb on + strand, within HUW76_03885at 782.134 kb on + strand, within HUW76_03885at 782.169 kb on - strand, within HUW76_03885at 782.199 kb on + strand, within HUW76_03885at 782.207 kb on - strand, within HUW76_03885at 782.212 kb on - strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.231 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.233 kb on + strand, within HUW76_03885at 782.241 kb on - strand, within HUW76_03885at 782.279 kb on + strand, within HUW76_03885at 782.340 kb on + strandat 782.347 kb on + strandat 782.383 kb on + strandat 782.401 kb on - strandat 782.419 kb on - strandat 782.419 kb on - strandat 782.512 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.577 kb on + strand, within HUW76_03890at 782.577 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.650 kb on - strand, within HUW76_03890at 782.650 kb on - strand, within HUW76_03890at 782.737 kb on - strand, within HUW76_03890at 782.737 kb on - strand, within HUW76_03890at 782.761 kb on - strand, within HUW76_03890at 782.776 kb on - strand, within HUW76_03890at 782.776 kb on - strand, within HUW76_03890at 782.809 kb on + strand, within HUW76_03890at 782.941 kb on + strand, within HUW76_03890at 782.941 kb on + strand, within HUW76_03890at 782.961 kb on + strand, within HUW76_03890at 782.995 kb on + strand, within HUW76_03890at 783.016 kb on + strandat 783.115 kb on - strandat 783.115 kb on - strandat 783.115 kb on - strandat 783.267 kb on + strandat 783.288 kb on + strandat 783.288 kb on + strandat 783.288 kb on + strandat 783.296 kb on - strandat 783.346 kb on + strandat 783.354 kb on - strandat 783.403 kb on - strandat 783.416 kb on + strandat 783.416 kb on + strandat 783.416 kb on + strandat 783.416 kb on + strandat 783.424 kb on - strandat 783.503 kb on + strand, within HUW76_03895at 783.550 kb on + strand, within HUW76_03895at 783.558 kb on - strand, within HUW76_03895at 783.584 kb on + strand, within HUW76_03895at 783.584 kb on + strand, within HUW76_03895at 783.592 kb on + strand, within HUW76_03895at 783.632 kb on + strand, within HUW76_03895at 783.730 kb on + strand, within HUW76_03895at 783.735 kb on + strand, within HUW76_03895at 783.735 kb on + strand, within HUW76_03895at 783.831 kb on - strand, within HUW76_03895at 783.831 kb on - strand, within HUW76_03895at 783.866 kb on + strand, within HUW76_03895at 783.866 kb on + strand, within HUW76_03895at 783.877 kb on + strand, within HUW76_03895at 783.877 kb on + strand, within HUW76_03895at 783.886 kb on + strand, within HUW76_03895at 783.892 kb on + strand, within HUW76_03895at 783.894 kb on - strand, within HUW76_03895at 783.894 kb on - strand, within HUW76_03895at 783.945 kb on + strand, within HUW76_03895at 783.945 kb on + strand, within HUW76_03895

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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781,446 + HUW76_03885 0.24 -2.0
781,446 + HUW76_03885 0.24 -2.4
781,446 + HUW76_03885 0.24 -3.1
781,456 + HUW76_03885 0.25 -2.1
781,456 + HUW76_03885 0.25 -1.6
781,456 - HUW76_03885 0.25 -3.9
781,456 - HUW76_03885 0.25 -3.6
781,464 - HUW76_03885 0.26 -2.9
781,464 - HUW76_03885 0.26 -2.8
781,464 - HUW76_03885 0.26 -3.5
781,502 - HUW76_03885 0.29 -3.8
781,502 - HUW76_03885 0.29 -0.3
781,502 - HUW76_03885 0.29 -3.4
781,502 - HUW76_03885 0.29 -3.1
781,531 - HUW76_03885 0.31 -4.6
781,554 - HUW76_03885 0.33 -4.1
781,574 + HUW76_03885 0.34 -4.9
781,576 - HUW76_03885 0.34 -2.7
781,576 - HUW76_03885 0.34 -2.0
781,608 + HUW76_03885 0.37 -4.8
781,680 + HUW76_03885 0.43 -5.4
781,728 + HUW76_03885 0.46 -4.8
781,728 + HUW76_03885 0.46 -3.6
781,736 - HUW76_03885 0.47 -2.0
781,736 - HUW76_03885 0.47 -5.7
781,736 - HUW76_03885 0.47 -2.6
781,736 - HUW76_03885 0.47 -4.4
781,744 + HUW76_03885 0.48 -3.2
781,744 + HUW76_03885 0.48 -3.1
781,767 + HUW76_03885 0.49 -2.4
781,767 + HUW76_03885 0.49 -2.0
781,808 + HUW76_03885 0.53 -2.1
781,808 + HUW76_03885 0.53 +1.5
781,813 - HUW76_03885 0.53 -4.7
781,887 + HUW76_03885 0.59 -4.6
781,947 + HUW76_03885 0.64 -3.1
781,947 + HUW76_03885 0.64 -4.9
781,955 - HUW76_03885 0.64 -3.7
781,955 - HUW76_03885 0.64 -3.3
781,955 - HUW76_03885 0.64 -0.9
782,072 - HUW76_03885 0.73 -4.1
782,111 + HUW76_03885 0.76 -1.4
782,111 + HUW76_03885 0.76 -1.7
782,133 + HUW76_03885 0.78 -4.3
782,134 + HUW76_03885 0.78 -2.0
782,134 + HUW76_03885 0.78 -1.4
782,169 - HUW76_03885 0.81 -5.8
782,199 + HUW76_03885 0.83 -1.4
782,207 - HUW76_03885 0.84 -2.9
782,212 - HUW76_03885 0.84 -5.1
782,214 + HUW76_03885 0.85 -2.2
782,214 + HUW76_03885 0.85 -1.4
782,214 + HUW76_03885 0.85 -3.0
782,214 + HUW76_03885 0.85 -1.9
782,214 + HUW76_03885 0.85 -2.3
782,222 - HUW76_03885 0.85 -4.8
782,222 - HUW76_03885 0.85 -3.2
782,222 - HUW76_03885 0.85 -2.1
782,222 - HUW76_03885 0.85 -4.9
782,222 - HUW76_03885 0.85 -5.4
782,222 - HUW76_03885 0.85 -5.3
782,222 - HUW76_03885 0.85 -3.4
782,222 - HUW76_03885 0.85 -3.0
782,222 - HUW76_03885 0.85 -3.7
782,222 - HUW76_03885 0.85 -4.2
782,231 - HUW76_03885 0.86 -3.1
782,232 - HUW76_03885 0.86 -5.2
782,232 - HUW76_03885 0.86 -4.3
782,232 - HUW76_03885 0.86 -4.0
782,233 + HUW76_03885 0.86 -0.3
782,241 - HUW76_03885 0.87 -2.4
782,279 + HUW76_03885 0.90 -3.2
782,340 + -2.9
782,347 + -2.4
782,383 + -3.5
782,401 - -5.0
782,419 - -4.2
782,419 - -3.1
782,512 - HUW76_03890 0.13 -4.1
782,543 - HUW76_03890 0.18 -2.9
782,543 - HUW76_03890 0.18 -1.8
782,543 - HUW76_03890 0.18 -3.3
782,577 + HUW76_03890 0.23 -2.7
782,577 + HUW76_03890 0.23 -3.0
782,642 + HUW76_03890 0.33 -1.0
782,642 + HUW76_03890 0.33 -2.9
782,642 + HUW76_03890 0.33 -3.6
782,650 - HUW76_03890 0.34 -0.6
782,650 - HUW76_03890 0.34 -4.4
782,737 - HUW76_03890 0.48 -0.7
782,737 - HUW76_03890 0.48 -2.6
782,761 - HUW76_03890 0.52 -5.6
782,776 - HUW76_03890 0.54 -3.5
782,776 - HUW76_03890 0.54 -2.6
782,809 + HUW76_03890 0.59 -0.9
782,941 + HUW76_03890 0.80 -2.7
782,941 + HUW76_03890 0.80 -2.3
782,961 + HUW76_03890 0.83 -3.5
782,995 + HUW76_03890 0.89 -0.7
783,016 + -2.3
783,115 - -1.7
783,115 - -5.1
783,115 - -4.1
783,267 + +0.9
783,288 + +0.1
783,288 + +1.4
783,288 + +1.8
783,296 - -1.0
783,346 + +1.4
783,354 - -5.3
783,403 - -3.4
783,416 + +1.3
783,416 + +2.6
783,416 + +2.9
783,416 + +1.3
783,424 - -1.7
783,503 + HUW76_03895 0.14 +1.6
783,550 + HUW76_03895 0.17 +1.0
783,558 - HUW76_03895 0.17 -2.8
783,584 + HUW76_03895 0.19 +1.8
783,584 + HUW76_03895 0.19 +1.4
783,592 + HUW76_03895 0.19 -0.2
783,632 + HUW76_03895 0.21 +1.5
783,730 + HUW76_03895 0.27 +2.0
783,735 + HUW76_03895 0.27 +1.9
783,735 + HUW76_03895 0.27 +1.9
783,831 - HUW76_03895 0.33 -0.8
783,831 - HUW76_03895 0.33 -1.1
783,866 + HUW76_03895 0.35 +2.3
783,866 + HUW76_03895 0.35 -0.6
783,877 + HUW76_03895 0.35 +2.5
783,877 + HUW76_03895 0.35 +1.2
783,886 + HUW76_03895 0.36 -0.5
783,892 + HUW76_03895 0.36 +1.8
783,894 - HUW76_03895 0.36 +0.7
783,894 - HUW76_03895 0.36 -1.8
783,945 + HUW76_03895 0.39 +1.0
783,945 + HUW76_03895 0.39 +1.5

Or see this region's nucleotide sequence