Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03740

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03735 and HUW76_03740 are separated by 191 nucleotidesHUW76_03740 and HUW76_03745 are separated by 68 nucleotidesHUW76_03745 and HUW76_03750 are separated by 9 nucleotides HUW76_03735: HUW76_03735 - ATP-binding cassette domain-containing protein, at 744,199 to 745,818 _03735 HUW76_03740: HUW76_03740 - SDR family oxidoreductase, at 746,010 to 746,939 _03740 HUW76_03745: HUW76_03745 - adenylate kinase, at 747,008 to 747,643 _03745 HUW76_03750: HUW76_03750 - type I methionyl aminopeptidase, at 747,653 to 748,417 _03750 Position (kb) 746 747Strain fitness (log2 ratio) -2 -1 0 1 2at 745.138 kb on + strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.185 kb on - strand, within HUW76_03735at 745.243 kb on + strand, within HUW76_03735at 745.300 kb on - strand, within HUW76_03735at 745.380 kb on - strand, within HUW76_03735at 745.444 kb on - strand, within HUW76_03735at 745.568 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.639 kb on + strand, within HUW76_03735at 745.709 kb on + strandat 745.717 kb on - strandat 745.717 kb on - strandat 745.718 kb on + strandat 745.727 kb on - strandat 745.733 kb on - strandat 745.733 kb on - strandat 745.737 kb on + strandat 745.750 kb on - strandat 745.808 kb on - strandat 746.061 kb on + strandat 746.061 kb on + strandat 746.090 kb on + strandat 746.090 kb on + strandat 746.235 kb on - strand, within HUW76_03740at 746.302 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.315 kb on - strand, within HUW76_03740at 746.322 kb on + strand, within HUW76_03740at 746.324 kb on + strand, within HUW76_03740at 746.324 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.463 kb on + strand, within HUW76_03740at 746.471 kb on - strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.495 kb on - strand, within HUW76_03740at 746.495 kb on - strand, within HUW76_03740at 746.578 kb on - strand, within HUW76_03740at 746.594 kb on - strand, within HUW76_03740at 746.604 kb on - strand, within HUW76_03740at 746.604 kb on - strand, within HUW76_03740at 746.673 kb on - strand, within HUW76_03740at 746.673 kb on - strand, within HUW76_03740at 746.710 kb on - strand, within HUW76_03740at 746.856 kb on + strandat 746.856 kb on + strandat 746.910 kb on + strandat 746.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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745,138 + HUW76_03735 0.58 +0.3
745,146 - HUW76_03735 0.58 +0.3
745,146 - HUW76_03735 0.58 +1.4
745,146 - HUW76_03735 0.58 +0.6
745,185 - HUW76_03735 0.61 +1.5
745,243 + HUW76_03735 0.64 +1.5
745,300 - HUW76_03735 0.68 +1.2
745,380 - HUW76_03735 0.73 +1.5
745,444 - HUW76_03735 0.77 +1.3
745,568 - HUW76_03735 0.85 +1.4
745,578 - HUW76_03735 0.85 +1.8
745,578 - HUW76_03735 0.85 +0.3
745,578 - HUW76_03735 0.85 +0.5
745,639 + HUW76_03735 0.89 +1.1
745,709 + +0.8
745,717 - +1.3
745,717 - +1.6
745,718 + +2.2
745,727 - +1.4
745,733 - +2.5
745,733 - +2.0
745,737 + +1.4
745,750 - +1.3
745,808 - +0.5
746,061 + +1.0
746,061 + -0.7
746,090 + -0.3
746,090 + -0.3
746,235 - HUW76_03740 0.24 -2.0
746,302 + HUW76_03740 0.31 +2.0
746,307 + HUW76_03740 0.32 +0.8
746,307 + HUW76_03740 0.32 +1.5
746,307 + HUW76_03740 0.32 -1.7
746,307 + HUW76_03740 0.32 +0.4
746,307 + HUW76_03740 0.32 -0.2
746,307 + HUW76_03740 0.32 +1.6
746,307 + HUW76_03740 0.32 -0.9
746,307 + HUW76_03740 0.32 +0.3
746,315 - HUW76_03740 0.33 -0.1
746,322 + HUW76_03740 0.34 -2.3
746,324 + HUW76_03740 0.34 +0.5
746,324 + HUW76_03740 0.34 +0.0
746,453 + HUW76_03740 0.48 +1.0
746,453 + HUW76_03740 0.48 +1.0
746,453 + HUW76_03740 0.48 -0.3
746,453 + HUW76_03740 0.48 +0.4
746,453 + HUW76_03740 0.48 +0.0
746,453 + HUW76_03740 0.48 +0.4
746,461 - HUW76_03740 0.48 -0.5
746,461 - HUW76_03740 0.48 +0.1
746,461 - HUW76_03740 0.48 +0.6
746,461 - HUW76_03740 0.48 +1.8
746,461 - HUW76_03740 0.48 +1.4
746,461 - HUW76_03740 0.48 +0.6
746,463 + HUW76_03740 0.49 +1.1
746,471 - HUW76_03740 0.50 +0.5
746,487 + HUW76_03740 0.51 +0.1
746,487 + HUW76_03740 0.51 +2.3
746,487 + HUW76_03740 0.51 +1.2
746,487 + HUW76_03740 0.51 -0.7
746,495 - HUW76_03740 0.52 +0.2
746,495 - HUW76_03740 0.52 +0.6
746,578 - HUW76_03740 0.61 +0.1
746,594 - HUW76_03740 0.63 -1.4
746,604 - HUW76_03740 0.64 -0.4
746,604 - HUW76_03740 0.64 +0.6
746,673 - HUW76_03740 0.71 +0.9
746,673 - HUW76_03740 0.71 -0.7
746,710 - HUW76_03740 0.75 -0.7
746,856 + -0.4
746,856 + +0.5
746,910 + -0.3
746,923 - +0.5

Or see this region's nucleotide sequence