Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03115

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03105 and HUW76_03110 overlap by 4 nucleotidesHUW76_03110 and HUW76_03115 are separated by 40 nucleotidesHUW76_03115 and HUW76_03120 are separated by 51 nucleotidesHUW76_03120 and HUW76_03125 are separated by 33 nucleotides HUW76_03105: HUW76_03105 - ATP synthase F1 subunit delta, at 631,723 to 632,247 _03105 HUW76_03110: HUW76_03110 - F0F1 ATP synthase subunit B, at 632,244 to 632,735 _03110 HUW76_03115: HUW76_03115 - ATP synthase F0 subunit C, at 632,776 to 633,045 _03115 HUW76_03120: HUW76_03120 - F0F1 ATP synthase subunit A, at 633,097 to 633,864 _03120 HUW76_03125: HUW76_03125 - hypothetical protein, at 633,898 to 634,272 _03125 Position (kb) 632 633 634Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 632.002 kb on + strand, within HUW76_03105at 632.028 kb on + strand, within HUW76_03105at 632.028 kb on + strand, within HUW76_03105at 632.036 kb on + strand, within HUW76_03105at 632.129 kb on + strand, within HUW76_03105at 632.134 kb on + strand, within HUW76_03105at 632.137 kb on - strand, within HUW76_03105at 632.152 kb on + strand, within HUW76_03105at 632.160 kb on - strand, within HUW76_03105at 632.211 kb on - strandat 632.336 kb on + strand, within HUW76_03110at 632.535 kb on - strand, within HUW76_03110at 632.535 kb on - strand, within HUW76_03110at 632.550 kb on + strand, within HUW76_03110at 632.550 kb on + strand, within HUW76_03110at 632.595 kb on - strand, within HUW76_03110at 632.595 kb on - strand, within HUW76_03110at 632.781 kb on - strandat 632.807 kb on - strand, within HUW76_03115at 632.868 kb on - strand, within HUW76_03115at 632.875 kb on - strand, within HUW76_03115at 632.919 kb on - strand, within HUW76_03115at 632.919 kb on - strand, within HUW76_03115at 632.949 kb on - strand, within HUW76_03115at 632.952 kb on + strand, within HUW76_03115at 632.952 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.962 kb on - strand, within HUW76_03115at 632.963 kb on + strand, within HUW76_03115at 632.963 kb on + strand, within HUW76_03115at 632.964 kb on + strand, within HUW76_03115at 632.964 kb on + strand, within HUW76_03115at 632.986 kb on - strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.040 kb on - strandat 633.040 kb on - strandat 633.148 kb on - strandat 633.148 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.184 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.311 kb on - strand, within HUW76_03120at 633.315 kb on + strand, within HUW76_03120at 633.338 kb on + strand, within HUW76_03120at 633.346 kb on - strand, within HUW76_03120at 633.469 kb on + strand, within HUW76_03120at 633.477 kb on - strand, within HUW76_03120at 633.477 kb on - strand, within HUW76_03120at 633.522 kb on + strand, within HUW76_03120at 633.535 kb on + strand, within HUW76_03120at 633.535 kb on + strand, within HUW76_03120at 633.543 kb on - strand, within HUW76_03120at 633.634 kb on - strand, within HUW76_03120at 633.634 kb on - strand, within HUW76_03120at 633.748 kb on - strand, within HUW76_03120at 633.748 kb on - strand, within HUW76_03120at 633.750 kb on + strand, within HUW76_03120at 633.750 kb on + strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.758 kb on - strand, within HUW76_03120at 633.761 kb on + strand, within HUW76_03120at 633.761 kb on + strand, within HUW76_03120at 633.761 kb on + strand, within HUW76_03120at 633.761 kb on + strand, within HUW76_03120at 633.761 kb on + strand, within HUW76_03120at 633.769 kb on - strand, within HUW76_03120at 633.771 kb on + strand, within HUW76_03120at 633.771 kb on + strand, within HUW76_03120at 633.771 kb on + strand, within HUW76_03120at 633.806 kb on + strandat 633.813 kb on - strandat 633.864 kb on + strandat 633.864 kb on + strandat 633.864 kb on + strandat 633.930 kb on + strandat 633.930 kb on + strandat 633.959 kb on - strand, within HUW76_03125at 633.959 kb on - strand, within HUW76_03125

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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632,002 + HUW76_03105 0.53 -4.3
632,028 + HUW76_03105 0.58 -3.5
632,028 + HUW76_03105 0.58 -2.8
632,036 + HUW76_03105 0.60 -3.5
632,129 + HUW76_03105 0.77 -4.1
632,134 + HUW76_03105 0.78 -1.2
632,137 - HUW76_03105 0.79 -5.1
632,152 + HUW76_03105 0.82 -1.5
632,160 - HUW76_03105 0.83 -3.3
632,211 - -4.2
632,336 + HUW76_03110 0.19 -0.3
632,535 - HUW76_03110 0.59 -4.3
632,535 - HUW76_03110 0.59 -5.1
632,550 + HUW76_03110 0.62 -3.3
632,550 + HUW76_03110 0.62 -0.5
632,595 - HUW76_03110 0.71 -2.9
632,595 - HUW76_03110 0.71 -2.9
632,781 - -0.4
632,807 - HUW76_03115 0.11 -5.4
632,868 - HUW76_03115 0.34 -4.5
632,875 - HUW76_03115 0.37 -3.5
632,919 - HUW76_03115 0.53 -3.2
632,919 - HUW76_03115 0.53 -3.7
632,949 - HUW76_03115 0.64 -2.9
632,952 + HUW76_03115 0.65 -0.8
632,952 + HUW76_03115 0.65 -2.7
632,954 + HUW76_03115 0.66 -3.8
632,954 + HUW76_03115 0.66 -1.3
632,954 + HUW76_03115 0.66 +1.2
632,954 + HUW76_03115 0.66 -3.1
632,961 - HUW76_03115 0.69 -3.7
632,961 - HUW76_03115 0.69 -2.0
632,961 - HUW76_03115 0.69 -3.3
632,961 - HUW76_03115 0.69 -0.7
632,961 - HUW76_03115 0.69 -4.8
632,961 - HUW76_03115 0.69 -3.2
632,962 - HUW76_03115 0.69 -4.0
632,963 + HUW76_03115 0.69 -2.0
632,963 + HUW76_03115 0.69 -2.2
632,964 + HUW76_03115 0.70 -1.9
632,964 + HUW76_03115 0.70 -2.8
632,986 - HUW76_03115 0.78 -0.9
632,988 + HUW76_03115 0.79 -2.6
632,988 + HUW76_03115 0.79 -3.3
632,988 + HUW76_03115 0.79 -4.0
632,988 + HUW76_03115 0.79 -5.1
632,988 + HUW76_03115 0.79 -4.0
632,988 + HUW76_03115 0.79 -1.3
632,988 + HUW76_03115 0.79 +0.1
632,988 + HUW76_03115 0.79 -3.3
632,988 + HUW76_03115 0.79 -2.0
632,996 - HUW76_03115 0.81 -4.1
632,996 - HUW76_03115 0.81 -3.7
632,996 - HUW76_03115 0.81 -5.0
632,996 - HUW76_03115 0.81 -3.3
632,996 - HUW76_03115 0.81 -5.7
632,996 - HUW76_03115 0.81 -3.8
632,996 - HUW76_03115 0.81 -1.0
632,996 - HUW76_03115 0.81 -4.6
633,010 + HUW76_03115 0.87 -3.2
633,010 + HUW76_03115 0.87 -2.6
633,010 + HUW76_03115 0.87 -4.1
633,010 + HUW76_03115 0.87 -0.9
633,010 + HUW76_03115 0.87 -3.6
633,018 - HUW76_03115 0.90 -4.6
633,018 - HUW76_03115 0.90 -3.8
633,018 - HUW76_03115 0.90 -3.8
633,040 - -1.9
633,040 - -2.0
633,148 - -2.8
633,148 - -4.2
633,153 - -2.8
633,153 - -3.9
633,153 - -4.1
633,153 - -2.3
633,184 + HUW76_03120 0.11 -3.5
633,244 + HUW76_03120 0.19 -1.8
633,244 + HUW76_03120 0.19 -3.3
633,244 + HUW76_03120 0.19 -2.8
633,244 + HUW76_03120 0.19 -3.7
633,311 - HUW76_03120 0.28 -4.9
633,315 + HUW76_03120 0.28 -4.8
633,338 + HUW76_03120 0.31 -3.7
633,346 - HUW76_03120 0.32 -5.5
633,469 + HUW76_03120 0.48 -3.7
633,477 - HUW76_03120 0.49 -3.6
633,477 - HUW76_03120 0.49 -3.7
633,522 + HUW76_03120 0.55 -4.1
633,535 + HUW76_03120 0.57 -4.3
633,535 + HUW76_03120 0.57 -3.9
633,543 - HUW76_03120 0.58 -4.9
633,634 - HUW76_03120 0.70 -2.1
633,634 - HUW76_03120 0.70 -2.6
633,748 - HUW76_03120 0.85 -4.9
633,748 - HUW76_03120 0.85 -5.3
633,750 + HUW76_03120 0.85 -3.9
633,750 + HUW76_03120 0.85 -1.7
633,758 - HUW76_03120 0.86 -3.7
633,758 - HUW76_03120 0.86 -2.5
633,758 - HUW76_03120 0.86 -3.2
633,758 - HUW76_03120 0.86 -3.5
633,758 - HUW76_03120 0.86 -4.4
633,758 - HUW76_03120 0.86 -2.9
633,761 + HUW76_03120 0.86 -0.4
633,761 + HUW76_03120 0.86 -2.2
633,761 + HUW76_03120 0.86 -2.4
633,761 + HUW76_03120 0.86 -4.1
633,761 + HUW76_03120 0.86 -0.9
633,769 - HUW76_03120 0.88 -3.6
633,771 + HUW76_03120 0.88 -3.2
633,771 + HUW76_03120 0.88 -3.4
633,771 + HUW76_03120 0.88 -0.6
633,806 + -4.7
633,813 - -0.9
633,864 + -3.2
633,864 + -4.0
633,864 + -4.5
633,930 + -4.0
633,930 + -4.1
633,959 - HUW76_03125 0.16 -2.9
633,959 - HUW76_03125 0.16 -2.6

Or see this region's nucleotide sequence