Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03030

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03025 and HUW76_03030 are separated by 33 nucleotidesHUW76_03030 and HUW76_03035 overlap by 14 nucleotidesHUW76_03035 and HUW76_03040 are separated by 61 nucleotides HUW76_03025: HUW76_03025 - AI-2E family transporter, at 617,050 to 618,144 _03025 HUW76_03030: HUW76_03030 - NusG domain II-containing protein, at 618,178 to 618,570 _03030 HUW76_03035: HUW76_03035 - phosphatidylserine decarboxylase, at 618,557 to 619,459 _03035 HUW76_03040: HUW76_03040 - nicotinate phosphoribosyltransferase, at 619,521 to 621,026 _03040 Position (kb) 618 619Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 617.178 kb on + strand, within HUW76_03025at 617.184 kb on + strand, within HUW76_03025at 617.220 kb on + strand, within HUW76_03025at 617.220 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.239 kb on + strand, within HUW76_03025at 617.239 kb on + strand, within HUW76_03025at 617.240 kb on - strand, within HUW76_03025at 617.240 kb on - strand, within HUW76_03025at 617.249 kb on + strand, within HUW76_03025at 617.348 kb on + strand, within HUW76_03025at 617.348 kb on + strand, within HUW76_03025at 617.371 kb on + strand, within HUW76_03025at 617.379 kb on + strand, within HUW76_03025at 617.387 kb on - strand, within HUW76_03025at 617.387 kb on - strand, within HUW76_03025at 617.394 kb on - strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.399 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.534 kb on - strand, within HUW76_03025at 617.534 kb on - strand, within HUW76_03025at 617.560 kb on + strand, within HUW76_03025at 617.620 kb on + strand, within HUW76_03025at 617.620 kb on + strand, within HUW76_03025at 617.622 kb on - strand, within HUW76_03025at 617.643 kb on + strand, within HUW76_03025at 617.663 kb on - strand, within HUW76_03025at 617.663 kb on - strand, within HUW76_03025at 617.670 kb on + strand, within HUW76_03025at 617.673 kb on - strand, within HUW76_03025at 617.673 kb on - strand, within HUW76_03025at 617.774 kb on + strand, within HUW76_03025at 617.774 kb on + strand, within HUW76_03025at 617.782 kb on - strand, within HUW76_03025at 617.782 kb on - strand, within HUW76_03025at 617.799 kb on - strand, within HUW76_03025at 617.837 kb on - strand, within HUW76_03025at 617.996 kb on + strand, within HUW76_03025at 618.012 kb on + strand, within HUW76_03025at 618.012 kb on + strand, within HUW76_03025at 618.158 kb on + strandat 618.158 kb on + strandat 618.173 kb on + strandat 618.201 kb on - strandat 618.201 kb on - strandat 618.265 kb on - strand, within HUW76_03030at 618.265 kb on - strand, within HUW76_03030at 618.275 kb on - strand, within HUW76_03030at 618.291 kb on + strand, within HUW76_03030at 618.337 kb on - strand, within HUW76_03030at 618.365 kb on - strand, within HUW76_03030at 618.461 kb on + strand, within HUW76_03030at 618.479 kb on - strand, within HUW76_03030at 618.553 kb on - strandat 619.478 kb on - strandat 619.498 kb on - strandat 619.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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617,178 + HUW76_03025 0.12 -2.8
617,184 + HUW76_03025 0.12 -2.1
617,220 + HUW76_03025 0.16 -1.7
617,220 + HUW76_03025 0.16 -2.7
617,232 + HUW76_03025 0.17 -2.6
617,232 + HUW76_03025 0.17 -2.4
617,232 + HUW76_03025 0.17 -2.6
617,232 + HUW76_03025 0.17 -3.3
617,232 + HUW76_03025 0.17 -2.0
617,232 + HUW76_03025 0.17 -3.1
617,239 + HUW76_03025 0.17 -4.3
617,239 + HUW76_03025 0.17 -2.0
617,240 - HUW76_03025 0.17 -1.1
617,240 - HUW76_03025 0.17 -1.6
617,249 + HUW76_03025 0.18 -4.4
617,348 + HUW76_03025 0.27 -2.9
617,348 + HUW76_03025 0.27 -1.8
617,371 + HUW76_03025 0.29 -3.2
617,379 + HUW76_03025 0.30 -3.4
617,387 - HUW76_03025 0.31 -3.2
617,387 - HUW76_03025 0.31 -1.8
617,394 - HUW76_03025 0.31 -1.5
617,396 + HUW76_03025 0.32 -3.1
617,396 + HUW76_03025 0.32 -4.0
617,396 + HUW76_03025 0.32 -1.6
617,396 + HUW76_03025 0.32 -1.0
617,396 + HUW76_03025 0.32 -2.8
617,396 + HUW76_03025 0.32 -4.2
617,396 + HUW76_03025 0.32 -1.6
617,399 - HUW76_03025 0.32 -3.7
617,404 - HUW76_03025 0.32 -2.0
617,404 - HUW76_03025 0.32 -2.8
617,404 - HUW76_03025 0.32 -3.1
617,510 - HUW76_03025 0.42 -2.1
617,510 - HUW76_03025 0.42 -3.5
617,510 - HUW76_03025 0.42 -3.4
617,510 - HUW76_03025 0.42 -3.1
617,534 - HUW76_03025 0.44 -0.7
617,534 - HUW76_03025 0.44 -2.2
617,560 + HUW76_03025 0.47 -5.7
617,620 + HUW76_03025 0.52 -1.8
617,620 + HUW76_03025 0.52 -3.5
617,622 - HUW76_03025 0.52 -4.8
617,643 + HUW76_03025 0.54 -1.5
617,663 - HUW76_03025 0.56 -1.9
617,663 - HUW76_03025 0.56 -2.8
617,670 + HUW76_03025 0.57 -0.9
617,673 - HUW76_03025 0.57 -2.3
617,673 - HUW76_03025 0.57 +0.6
617,774 + HUW76_03025 0.66 -3.7
617,774 + HUW76_03025 0.66 -2.0
617,782 - HUW76_03025 0.67 -2.9
617,782 - HUW76_03025 0.67 -2.8
617,799 - HUW76_03025 0.68 -0.1
617,837 - HUW76_03025 0.72 -2.9
617,996 + HUW76_03025 0.86 -2.0
618,012 + HUW76_03025 0.88 -1.6
618,012 + HUW76_03025 0.88 -2.0
618,158 + -1.8
618,158 + -0.7
618,173 + -3.3
618,201 - +0.6
618,201 - +1.2
618,265 - HUW76_03030 0.22 +1.6
618,265 - HUW76_03030 0.22 -0.2
618,275 - HUW76_03030 0.25 -1.6
618,291 + HUW76_03030 0.29 -0.0
618,337 - HUW76_03030 0.40 +0.8
618,365 - HUW76_03030 0.48 +0.2
618,461 + HUW76_03030 0.72 +0.4
618,479 - HUW76_03030 0.77 -0.8
618,553 - -0.6
619,478 - -0.4
619,498 - -1.2
619,498 - -0.3

Or see this region's nucleotide sequence