Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02855

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02845 and HUW76_02850 overlap by 11 nucleotidesHUW76_02850 and HUW76_02855 are separated by 143 nucleotidesHUW76_02855 and HUW76_02860 are separated by 12 nucleotidesHUW76_02860 and HUW76_02865 are separated by 50 nucleotides HUW76_02845: HUW76_02845 - serine/threonine protein kinase, at 581,593 to 582,876 _02845 HUW76_02850: HUW76_02850 - VacJ family lipoprotein, at 582,866 to 583,633 _02850 HUW76_02855: HUW76_02855 - dipeptidase PepV, at 583,777 to 585,135 _02855 HUW76_02860: HUW76_02860 - DUF2156 domain-containing protein, at 585,148 to 586,020 _02860 HUW76_02865: HUW76_02865 - Na/Pi cotransporter family protein, at 586,071 to 587,690 _02865 Position (kb) 583 584 585 586Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 582.780 kb on + strandat 583.020 kb on + strand, within HUW76_02850at 583.020 kb on + strand, within HUW76_02850at 583.080 kb on + strand, within HUW76_02850at 583.080 kb on + strand, within HUW76_02850at 583.080 kb on + strand, within HUW76_02850at 583.080 kb on + strand, within HUW76_02850at 583.080 kb on + strand, within HUW76_02850at 583.092 kb on + strand, within HUW76_02850at 583.133 kb on + strand, within HUW76_02850at 583.222 kb on + strand, within HUW76_02850at 583.246 kb on + strand, within HUW76_02850at 583.246 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.256 kb on + strand, within HUW76_02850at 583.262 kb on + strand, within HUW76_02850at 583.302 kb on + strand, within HUW76_02850at 583.302 kb on + strand, within HUW76_02850at 583.303 kb on + strand, within HUW76_02850at 583.303 kb on + strand, within HUW76_02850at 583.334 kb on + strand, within HUW76_02850at 583.353 kb on + strand, within HUW76_02850at 583.485 kb on + strand, within HUW76_02850at 583.499 kb on + strand, within HUW76_02850at 583.499 kb on + strand, within HUW76_02850at 583.499 kb on + strand, within HUW76_02850at 583.499 kb on + strand, within HUW76_02850at 583.704 kb on + strandat 583.867 kb on + strandat 583.983 kb on + strand, within HUW76_02855at 583.983 kb on + strand, within HUW76_02855at 583.983 kb on + strand, within HUW76_02855at 584.055 kb on + strand, within HUW76_02855at 584.111 kb on + strand, within HUW76_02855at 584.202 kb on + strand, within HUW76_02855at 584.202 kb on + strand, within HUW76_02855at 584.205 kb on + strand, within HUW76_02855at 584.205 kb on + strand, within HUW76_02855at 584.205 kb on + strand, within HUW76_02855at 584.268 kb on + strand, within HUW76_02855at 584.333 kb on + strand, within HUW76_02855at 584.410 kb on + strand, within HUW76_02855at 584.537 kb on + strand, within HUW76_02855at 584.655 kb on + strand, within HUW76_02855at 584.655 kb on + strand, within HUW76_02855at 584.770 kb on + strand, within HUW76_02855at 584.770 kb on + strand, within HUW76_02855at 584.770 kb on + strand, within HUW76_02855at 584.770 kb on + strand, within HUW76_02855at 584.818 kb on + strand, within HUW76_02855at 584.835 kb on + strand, within HUW76_02855at 584.835 kb on + strand, within HUW76_02855at 584.835 kb on + strand, within HUW76_02855at 584.836 kb on + strand, within HUW76_02855at 584.862 kb on + strand, within HUW76_02855at 584.862 kb on + strand, within HUW76_02855at 584.869 kb on + strand, within HUW76_02855at 584.875 kb on + strand, within HUW76_02855at 584.875 kb on + strand, within HUW76_02855at 584.943 kb on + strand, within HUW76_02855at 584.943 kb on + strand, within HUW76_02855at 584.943 kb on + strand, within HUW76_02855at 584.943 kb on + strand, within HUW76_02855at 585.036 kb on + strandat 585.040 kb on + strandat 585.040 kb on + strandat 585.330 kb on + strand, within HUW76_02860at 585.330 kb on + strand, within HUW76_02860at 585.415 kb on + strand, within HUW76_02860at 585.415 kb on + strand, within HUW76_02860at 585.474 kb on + strand, within HUW76_02860at 585.474 kb on + strand, within HUW76_02860at 585.499 kb on + strand, within HUW76_02860at 585.499 kb on + strand, within HUW76_02860at 585.781 kb on + strand, within HUW76_02860at 585.794 kb on + strand, within HUW76_02860at 585.798 kb on + strand, within HUW76_02860at 585.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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582,780 + -2.8
583,020 + HUW76_02850 0.20 -3.1
583,020 + HUW76_02850 0.20 -2.9
583,080 + HUW76_02850 0.28 -1.6
583,080 + HUW76_02850 0.28 -1.8
583,080 + HUW76_02850 0.28 -4.2
583,080 + HUW76_02850 0.28 -3.4
583,080 + HUW76_02850 0.28 -1.7
583,092 + HUW76_02850 0.29 -3.8
583,133 + HUW76_02850 0.35 -2.4
583,222 + HUW76_02850 0.46 -3.6
583,246 + HUW76_02850 0.49 -2.6
583,246 + HUW76_02850 0.49 -3.4
583,256 + HUW76_02850 0.51 -1.2
583,256 + HUW76_02850 0.51 -4.9
583,256 + HUW76_02850 0.51 -5.0
583,256 + HUW76_02850 0.51 -4.6
583,256 + HUW76_02850 0.51 -3.9
583,256 + HUW76_02850 0.51 -5.1
583,256 + HUW76_02850 0.51 -2.7
583,256 + HUW76_02850 0.51 -1.9
583,256 + HUW76_02850 0.51 -3.3
583,256 + HUW76_02850 0.51 -3.3
583,262 + HUW76_02850 0.52 -5.5
583,302 + HUW76_02850 0.57 -3.6
583,302 + HUW76_02850 0.57 -4.3
583,303 + HUW76_02850 0.57 -2.3
583,303 + HUW76_02850 0.57 -1.4
583,334 + HUW76_02850 0.61 -2.5
583,353 + HUW76_02850 0.63 -4.3
583,485 + HUW76_02850 0.81 -4.7
583,499 + HUW76_02850 0.82 -2.0
583,499 + HUW76_02850 0.82 -4.1
583,499 + HUW76_02850 0.82 -3.5
583,499 + HUW76_02850 0.82 -2.9
583,704 + -4.6
583,867 + -5.7
583,983 + HUW76_02855 0.15 -5.0
583,983 + HUW76_02855 0.15 -4.2
583,983 + HUW76_02855 0.15 -5.6
584,055 + HUW76_02855 0.20 -4.0
584,111 + HUW76_02855 0.25 -4.5
584,202 + HUW76_02855 0.31 -3.1
584,202 + HUW76_02855 0.31 -4.6
584,205 + HUW76_02855 0.31 -3.7
584,205 + HUW76_02855 0.31 -4.2
584,205 + HUW76_02855 0.31 -5.1
584,268 + HUW76_02855 0.36 -4.0
584,333 + HUW76_02855 0.41 -1.9
584,410 + HUW76_02855 0.47 -1.6
584,537 + HUW76_02855 0.56 -5.4
584,655 + HUW76_02855 0.65 -4.7
584,655 + HUW76_02855 0.65 -5.1
584,770 + HUW76_02855 0.73 -3.3
584,770 + HUW76_02855 0.73 -4.9
584,770 + HUW76_02855 0.73 -5.2
584,770 + HUW76_02855 0.73 -3.4
584,818 + HUW76_02855 0.77 -4.7
584,835 + HUW76_02855 0.78 -4.3
584,835 + HUW76_02855 0.78 -5.1
584,835 + HUW76_02855 0.78 -5.1
584,836 + HUW76_02855 0.78 -5.7
584,862 + HUW76_02855 0.80 -3.5
584,862 + HUW76_02855 0.80 -2.6
584,869 + HUW76_02855 0.80 -4.7
584,875 + HUW76_02855 0.81 -4.8
584,875 + HUW76_02855 0.81 -2.6
584,943 + HUW76_02855 0.86 -2.7
584,943 + HUW76_02855 0.86 -4.6
584,943 + HUW76_02855 0.86 -5.1
584,943 + HUW76_02855 0.86 -5.0
585,036 + -5.7
585,040 + -2.0
585,040 + -4.3
585,330 + HUW76_02860 0.21 +1.6
585,330 + HUW76_02860 0.21 +0.7
585,415 + HUW76_02860 0.31 +0.3
585,415 + HUW76_02860 0.31 -0.9
585,474 + HUW76_02860 0.37 -1.5
585,474 + HUW76_02860 0.37 -0.9
585,499 + HUW76_02860 0.40 +0.8
585,499 + HUW76_02860 0.40 +0.9
585,781 + HUW76_02860 0.73 -0.0
585,794 + HUW76_02860 0.74 -1.6
585,798 + HUW76_02860 0.74 +1.1
585,945 + +0.4

Or see this region's nucleotide sequence