Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02360

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02355 and HUW76_02360 are separated by 118 nucleotidesHUW76_02360 and HUW76_02365 are separated by 1 nucleotidesHUW76_02365 and HUW76_02370 are separated by 4 nucleotides HUW76_02355: HUW76_02355 - nitronate monooxygenase, at 473,999 to 474,955 _02355 HUW76_02360: HUW76_02360 - septum site-determining protein MinC, at 475,074 to 475,724 _02360 HUW76_02365: HUW76_02365 - septum site-determining protein MinD, at 475,726 to 476,520 _02365 HUW76_02370: HUW76_02370 - cell division topological specificity factor MinE, at 476,525 to 476,794 _02370 Position (kb) 475 476Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 474.994 kb on + strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.002 kb on - strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.004 kb on + strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.012 kb on - strandat 475.171 kb on + strand, within HUW76_02360at 475.200 kb on + strand, within HUW76_02360at 475.200 kb on + strand, within HUW76_02360at 475.253 kb on + strand, within HUW76_02360at 475.261 kb on - strand, within HUW76_02360at 475.297 kb on - strand, within HUW76_02360at 475.297 kb on - strand, within HUW76_02360at 475.311 kb on - strand, within HUW76_02360at 475.347 kb on + strand, within HUW76_02360at 475.391 kb on + strand, within HUW76_02360at 475.391 kb on + strand, within HUW76_02360at 475.399 kb on + strand, within HUW76_02360at 475.412 kb on - strand, within HUW76_02360at 475.434 kb on + strand, within HUW76_02360at 475.434 kb on + strand, within HUW76_02360at 475.443 kb on + strand, within HUW76_02360at 475.459 kb on - strand, within HUW76_02360at 475.514 kb on + strand, within HUW76_02360at 475.514 kb on + strand, within HUW76_02360at 475.522 kb on + strand, within HUW76_02360at 475.522 kb on + strand, within HUW76_02360at 475.522 kb on - strand, within HUW76_02360at 475.527 kb on + strand, within HUW76_02360at 475.527 kb on + strand, within HUW76_02360at 475.535 kb on - strand, within HUW76_02360at 475.543 kb on - strand, within HUW76_02360at 475.558 kb on - strand, within HUW76_02360at 475.567 kb on + strand, within HUW76_02360at 475.580 kb on - strand, within HUW76_02360at 475.582 kb on + strand, within HUW76_02360at 475.620 kb on - strand, within HUW76_02360at 475.620 kb on - strand, within HUW76_02360at 475.643 kb on + strand, within HUW76_02360at 475.643 kb on + strand, within HUW76_02360at 475.645 kb on + strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.653 kb on - strand, within HUW76_02360at 475.715 kb on + strandat 475.741 kb on + strandat 475.741 kb on + strandat 475.751 kb on + strandat 475.759 kb on - strandat 475.759 kb on - strandat 475.799 kb on + strandat 475.799 kb on + strandat 475.807 kb on - strand, within HUW76_02365at 475.835 kb on - strand, within HUW76_02365at 475.835 kb on - strand, within HUW76_02365at 475.871 kb on - strand, within HUW76_02365at 475.887 kb on - strand, within HUW76_02365at 475.887 kb on - strand, within HUW76_02365at 475.929 kb on + strand, within HUW76_02365at 475.929 kb on + strand, within HUW76_02365at 475.929 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.956 kb on + strand, within HUW76_02365at 475.957 kb on + strand, within HUW76_02365at 475.964 kb on - strand, within HUW76_02365at 475.964 kb on - strand, within HUW76_02365at 475.965 kb on - strand, within HUW76_02365at 475.965 kb on - strand, within HUW76_02365at 475.980 kb on + strand, within HUW76_02365at 475.980 kb on + strand, within HUW76_02365at 475.983 kb on + strand, within HUW76_02365at 476.005 kb on + strand, within HUW76_02365at 476.063 kb on + strand, within HUW76_02365at 476.101 kb on + strand, within HUW76_02365at 476.101 kb on + strand, within HUW76_02365at 476.124 kb on + strand, within HUW76_02365at 476.164 kb on - strand, within HUW76_02365at 476.216 kb on + strand, within HUW76_02365at 476.216 kb on + strand, within HUW76_02365at 476.285 kb on + strand, within HUW76_02365at 476.285 kb on + strand, within HUW76_02365at 476.293 kb on - strand, within HUW76_02365at 476.327 kb on + strand, within HUW76_02365at 476.327 kb on + strand, within HUW76_02365at 476.344 kb on + strand, within HUW76_02365at 476.379 kb on - strand, within HUW76_02365at 476.405 kb on + strand, within HUW76_02365at 476.405 kb on + strand, within HUW76_02365at 476.405 kb on + strand, within HUW76_02365at 476.435 kb on + strand, within HUW76_02365at 476.449 kb on + strandat 476.455 kb on + strandat 476.455 kb on + strandat 476.503 kb on - strandat 476.503 kb on - strandat 476.516 kb on + strandat 476.713 kb on + strand, within HUW76_02370at 476.713 kb on + strand, within HUW76_02370

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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474,994 + +0.6
474,994 + +1.7
474,994 + +2.8
474,994 + +0.9
474,994 + +0.2
474,994 + +0.4
474,994 + +0.1
474,994 + +0.2
474,994 + +0.6
474,994 + +0.0
474,994 + +0.4
474,994 + -0.2
474,994 + +0.5
474,994 + +0.0
474,994 + -0.4
474,994 + -0.4
474,994 + -0.4
474,994 + +0.2
474,994 + +0.3
474,994 + +0.2
475,002 - -2.1
475,002 - -2.9
475,002 - -3.4
475,002 - -4.0
475,002 - -2.6
475,002 - -2.2
475,002 - +0.6
475,002 - -3.6
475,002 - -1.1
475,002 - -2.6
475,002 - -3.4
475,004 + -4.3
475,004 + +0.2
475,004 + -0.0
475,004 + +0.6
475,004 + +0.4
475,004 + -2.8
475,004 + +0.6
475,004 + -0.1
475,012 - -3.4
475,012 - -4.1
475,012 - -0.2
475,012 - -3.2
475,012 - -1.0
475,012 - -4.6
475,012 - -3.3
475,012 - -2.8
475,012 - -0.2
475,012 - -3.3
475,012 - +1.6
475,012 - -3.4
475,012 - -3.1
475,171 + HUW76_02360 0.15 -5.1
475,200 + HUW76_02360 0.19 -1.6
475,200 + HUW76_02360 0.19 -4.3
475,253 + HUW76_02360 0.27 -4.7
475,261 - HUW76_02360 0.29 -4.1
475,297 - HUW76_02360 0.34 -1.6
475,297 - HUW76_02360 0.34 -3.0
475,311 - HUW76_02360 0.36 -0.5
475,347 + HUW76_02360 0.42 -4.8
475,391 + HUW76_02360 0.49 -4.9
475,391 + HUW76_02360 0.49 -3.7
475,399 + HUW76_02360 0.50 -4.0
475,412 - HUW76_02360 0.52 -3.3
475,434 + HUW76_02360 0.55 -4.4
475,434 + HUW76_02360 0.55 -2.7
475,443 + HUW76_02360 0.57 -4.4
475,459 - HUW76_02360 0.59 -0.3
475,514 + HUW76_02360 0.68 -3.6
475,514 + HUW76_02360 0.68 -2.2
475,522 + HUW76_02360 0.69 -3.3
475,522 + HUW76_02360 0.69 -2.9
475,522 - HUW76_02360 0.69 -3.0
475,527 + HUW76_02360 0.70 -4.1
475,527 + HUW76_02360 0.70 -2.2
475,535 - HUW76_02360 0.71 -4.3
475,543 - HUW76_02360 0.72 -3.8
475,558 - HUW76_02360 0.74 -3.3
475,567 + HUW76_02360 0.76 -2.9
475,580 - HUW76_02360 0.78 -2.0
475,582 + HUW76_02360 0.78 -5.4
475,620 - HUW76_02360 0.84 -5.0
475,620 - HUW76_02360 0.84 +0.0
475,643 + HUW76_02360 0.87 -4.1
475,643 + HUW76_02360 0.87 -3.5
475,645 + HUW76_02360 0.88 -3.5
475,653 - HUW76_02360 0.89 -2.6
475,653 - HUW76_02360 0.89 -1.8
475,653 - HUW76_02360 0.89 -2.6
475,653 - HUW76_02360 0.89 -2.0
475,653 - HUW76_02360 0.89 -4.0
475,653 - HUW76_02360 0.89 -4.2
475,653 - HUW76_02360 0.89 -3.0
475,653 - HUW76_02360 0.89 -2.2
475,653 - HUW76_02360 0.89 -2.3
475,715 + -1.7
475,741 + -2.4
475,741 + -3.7
475,751 + -2.7
475,759 - -1.5
475,759 - -3.2
475,799 + -1.8
475,799 + -0.3
475,807 - HUW76_02365 0.10 -3.8
475,835 - HUW76_02365 0.14 -2.4
475,835 - HUW76_02365 0.14 -3.3
475,871 - HUW76_02365 0.18 -4.9
475,887 - HUW76_02365 0.20 -1.6
475,887 - HUW76_02365 0.20 -3.3
475,929 + HUW76_02365 0.26 -2.5
475,929 + HUW76_02365 0.26 -3.5
475,929 + HUW76_02365 0.26 -1.5
475,956 + HUW76_02365 0.29 -2.6
475,956 + HUW76_02365 0.29 -1.1
475,956 + HUW76_02365 0.29 -1.7
475,956 + HUW76_02365 0.29 -3.3
475,956 + HUW76_02365 0.29 -2.5
475,956 + HUW76_02365 0.29 -2.3
475,956 + HUW76_02365 0.29 -3.0
475,957 + HUW76_02365 0.29 -2.5
475,964 - HUW76_02365 0.30 -1.8
475,964 - HUW76_02365 0.30 -3.8
475,965 - HUW76_02365 0.30 -1.2
475,965 - HUW76_02365 0.30 -2.4
475,980 + HUW76_02365 0.32 -2.6
475,980 + HUW76_02365 0.32 -0.4
475,983 + HUW76_02365 0.32 -2.7
476,005 + HUW76_02365 0.35 -3.0
476,063 + HUW76_02365 0.42 -3.3
476,101 + HUW76_02365 0.47 -3.2
476,101 + HUW76_02365 0.47 -4.0
476,124 + HUW76_02365 0.50 -1.6
476,164 - HUW76_02365 0.55 -4.2
476,216 + HUW76_02365 0.62 -4.8
476,216 + HUW76_02365 0.62 -2.5
476,285 + HUW76_02365 0.70 -3.1
476,285 + HUW76_02365 0.70 -1.8
476,293 - HUW76_02365 0.71 -3.2
476,327 + HUW76_02365 0.76 -2.3
476,327 + HUW76_02365 0.76 -5.2
476,344 + HUW76_02365 0.78 -2.7
476,379 - HUW76_02365 0.82 -3.3
476,405 + HUW76_02365 0.85 -3.6
476,405 + HUW76_02365 0.85 -2.9
476,405 + HUW76_02365 0.85 -2.3
476,435 + HUW76_02365 0.89 +0.3
476,449 + -3.9
476,455 + -1.7
476,455 + -1.1
476,503 - -2.2
476,503 - -2.6
476,516 + -4.5
476,713 + HUW76_02370 0.70 -0.6
476,713 + HUW76_02370 0.70 +0.8

Or see this region's nucleotide sequence