Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02170

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02165 and HUW76_02170 are separated by 14 nucleotidesHUW76_02170 and HUW76_02175 are separated by 233 nucleotides HUW76_02165: HUW76_02165 - hemagglutinin repeat-containing protein, at 430,865 to 439,496 _02165 HUW76_02170: HUW76_02170 - hypothetical protein, at 439,511 to 440,662 _02170 HUW76_02175: HUW76_02175 - helicase, at 440,896 to 441,618 _02175 Position (kb) 439 440 441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 438.584 kb on + strand, within HUW76_02165at 438.584 kb on + strand, within HUW76_02165at 438.637 kb on + strandat 438.637 kb on + strandat 438.637 kb on + strandat 438.651 kb on + strandat 438.651 kb on + strandat 438.670 kb on + strandat 438.670 kb on + strandat 438.757 kb on - strandat 438.757 kb on - strandat 438.790 kb on - strandat 438.790 kb on - strandat 438.804 kb on + strandat 438.813 kb on + strandat 438.850 kb on + strandat 438.862 kb on + strandat 438.870 kb on - strandat 438.870 kb on - strandat 438.887 kb on - strandat 438.892 kb on - strandat 438.892 kb on - strandat 438.899 kb on - strandat 438.910 kb on - strandat 438.910 kb on - strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.962 kb on + strandat 438.970 kb on - strandat 438.970 kb on - strandat 438.970 kb on - strandat 438.970 kb on - strandat 438.970 kb on - strandat 438.970 kb on - strandat 439.113 kb on + strandat 439.113 kb on + strandat 439.113 kb on + strandat 439.113 kb on + strandat 439.132 kb on - strandat 439.151 kb on + strandat 439.172 kb on - strandat 439.172 kb on - strandat 439.297 kb on + strandat 439.305 kb on - strandat 439.333 kb on - strandat 439.333 kb on - strandat 439.381 kb on + strandat 439.381 kb on + strandat 439.500 kb on - strandat 439.500 kb on - strandat 439.565 kb on - strandat 439.638 kb on + strand, within HUW76_02170at 439.713 kb on + strand, within HUW76_02170at 439.713 kb on + strand, within HUW76_02170at 439.720 kb on + strand, within HUW76_02170at 439.720 kb on + strand, within HUW76_02170at 439.720 kb on + strand, within HUW76_02170at 439.854 kb on - strand, within HUW76_02170at 439.884 kb on + strand, within HUW76_02170at 439.892 kb on - strand, within HUW76_02170at 439.910 kb on + strand, within HUW76_02170at 439.910 kb on + strand, within HUW76_02170at 439.910 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 440.028 kb on + strand, within HUW76_02170at 440.062 kb on + strand, within HUW76_02170at 440.062 kb on + strand, within HUW76_02170at 440.070 kb on - strand, within HUW76_02170at 440.088 kb on + strand, within HUW76_02170at 440.088 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.156 kb on - strand, within HUW76_02170at 440.221 kb on + strand, within HUW76_02170at 440.223 kb on + strand, within HUW76_02170at 440.223 kb on + strand, within HUW76_02170at 440.231 kb on - strand, within HUW76_02170at 440.238 kb on + strand, within HUW76_02170at 440.238 kb on + strand, within HUW76_02170at 440.241 kb on - strand, within HUW76_02170at 440.293 kb on + strand, within HUW76_02170at 440.293 kb on + strand, within HUW76_02170at 440.705 kb on - strandat 440.705 kb on - strandat 440.705 kb on - strandat 440.705 kb on - strandat 440.713 kb on - strandat 440.912 kb on + strandat 440.974 kb on + strand, within HUW76_02175at 440.974 kb on + strand, within HUW76_02175at 440.988 kb on + strand, within HUW76_02175at 440.988 kb on + strand, within HUW76_02175at 441.019 kb on - strand, within HUW76_02175at 441.055 kb on + strand, within HUW76_02175at 441.055 kb on + strand, within HUW76_02175at 441.104 kb on - strand, within HUW76_02175at 441.105 kb on - strand, within HUW76_02175at 441.105 kb on - strand, within HUW76_02175at 441.123 kb on + strand, within HUW76_02175at 441.123 kb on + strand, within HUW76_02175at 441.125 kb on + strand, within HUW76_02175at 441.145 kb on + strand, within HUW76_02175at 441.254 kb on - strand, within HUW76_02175at 441.293 kb on - strand, within HUW76_02175at 441.322 kb on - strand, within HUW76_02175at 441.322 kb on - strand, within HUW76_02175

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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438,584 + HUW76_02165 0.89 -2.2
438,584 + HUW76_02165 0.89 -0.8
438,637 + +0.8
438,637 + +0.3
438,637 + -0.2
438,651 + -1.5
438,651 + -0.2
438,670 + +1.6
438,670 + +0.2
438,757 - -1.4
438,757 - +0.3
438,790 - -0.3
438,790 - +0.3
438,804 + +0.4
438,813 + -0.1
438,850 + -1.3
438,862 + +0.3
438,870 - +0.5
438,870 - -0.2
438,887 - +0.3
438,892 - +0.2
438,892 - -2.1
438,899 - -0.6
438,910 - +1.1
438,910 - -1.3
438,962 + -0.7
438,962 + -0.5
438,962 + +0.8
438,962 + -0.0
438,962 + -0.1
438,962 + +0.3
438,962 + +0.9
438,962 + -0.1
438,970 - -0.2
438,970 - -0.4
438,970 - -0.6
438,970 - +1.0
438,970 - +0.1
438,970 - -0.2
439,113 + +0.2
439,113 + -0.6
439,113 + +0.3
439,113 + +0.5
439,132 - +0.1
439,151 + -0.3
439,172 - -1.0
439,172 - +0.4
439,297 + -0.2
439,305 - +0.2
439,333 - -0.4
439,333 - -0.6
439,381 + -0.4
439,381 + +0.2
439,500 - -0.6
439,500 - -0.5
439,565 - -3.2
439,638 + HUW76_02170 0.11 -1.9
439,713 + HUW76_02170 0.18 -1.9
439,713 + HUW76_02170 0.18 -3.1
439,720 + HUW76_02170 0.18 -3.5
439,720 + HUW76_02170 0.18 -1.6
439,720 + HUW76_02170 0.18 -0.7
439,854 - HUW76_02170 0.30 -1.0
439,884 + HUW76_02170 0.32 -4.0
439,892 - HUW76_02170 0.33 -0.4
439,910 + HUW76_02170 0.35 -4.5
439,910 + HUW76_02170 0.35 -2.4
439,910 + HUW76_02170 0.35 -4.3
439,955 + HUW76_02170 0.39 -2.5
439,955 + HUW76_02170 0.39 -2.7
439,955 + HUW76_02170 0.39 +0.3
440,028 + HUW76_02170 0.45 -3.5
440,062 + HUW76_02170 0.48 -4.0
440,062 + HUW76_02170 0.48 -0.4
440,070 - HUW76_02170 0.49 -1.2
440,088 + HUW76_02170 0.50 -4.1
440,088 + HUW76_02170 0.50 -3.2
440,132 + HUW76_02170 0.54 -2.0
440,132 + HUW76_02170 0.54 -1.3
440,132 + HUW76_02170 0.54 -3.6
440,132 + HUW76_02170 0.54 -0.7
440,132 + HUW76_02170 0.54 -1.2
440,156 - HUW76_02170 0.56 +0.4
440,221 + HUW76_02170 0.62 -3.2
440,223 + HUW76_02170 0.62 -2.6
440,223 + HUW76_02170 0.62 -3.0
440,231 - HUW76_02170 0.62 -0.2
440,238 + HUW76_02170 0.63 -3.9
440,238 + HUW76_02170 0.63 -3.0
440,241 - HUW76_02170 0.63 -0.1
440,293 + HUW76_02170 0.68 -1.9
440,293 + HUW76_02170 0.68 -2.9
440,705 - +1.4
440,705 - +0.1
440,705 - +0.7
440,705 - -0.2
440,713 - +0.1
440,912 + -0.4
440,974 + HUW76_02175 0.11 +1.0
440,974 + HUW76_02175 0.11 +0.1
440,988 + HUW76_02175 0.13 -0.3
440,988 + HUW76_02175 0.13 -0.2
441,019 - HUW76_02175 0.17 +0.4
441,055 + HUW76_02175 0.22 -0.5
441,055 + HUW76_02175 0.22 -0.5
441,104 - HUW76_02175 0.29 +1.2
441,105 - HUW76_02175 0.29 -2.5
441,105 - HUW76_02175 0.29 -0.1
441,123 + HUW76_02175 0.31 +0.1
441,123 + HUW76_02175 0.31 +0.7
441,125 + HUW76_02175 0.32 -0.5
441,145 + HUW76_02175 0.34 -0.6
441,254 - HUW76_02175 0.50 +0.4
441,293 - HUW76_02175 0.55 +0.0
441,322 - HUW76_02175 0.59 -2.1
441,322 - HUW76_02175 0.59 -4.2

Or see this region's nucleotide sequence