Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01350

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01340 and HUW76_01345 are separated by 233 nucleotidesHUW76_01345 and HUW76_01350 are separated by 52 nucleotidesHUW76_01350 and HUW76_01355 are separated by 1 nucleotides HUW76_01340: HUW76_01340 - sugar transferase, at 262,732 to 263,355 _01340 HUW76_01345: HUW76_01345 - acetyltransferase, at 263,589 to 264,014 _01345 HUW76_01350: HUW76_01350 - nucleotide sugar dehydrogenase, at 264,067 to 265,365 _01350 HUW76_01355: HUW76_01355 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 265,367 to 266,557 _01355 Position (kb) 264 265 266Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 263.132 kb on - strand, within HUW76_01340at 263.209 kb on - strand, within HUW76_01340at 263.219 kb on + strand, within HUW76_01340at 263.219 kb on + strand, within HUW76_01340at 263.331 kb on + strandat 263.377 kb on + strandat 263.377 kb on + strandat 263.377 kb on + strandat 263.377 kb on + strandat 263.377 kb on + strandat 263.377 kb on - strandat 263.377 kb on - strandat 263.382 kb on + strandat 263.382 kb on + strandat 263.382 kb on + strandat 263.385 kb on - strandat 263.385 kb on - strandat 263.385 kb on - strandat 263.443 kb on + strandat 263.443 kb on + strandat 263.451 kb on - strandat 263.655 kb on + strand, within HUW76_01345at 263.709 kb on + strand, within HUW76_01345at 263.709 kb on + strand, within HUW76_01345at 263.770 kb on + strand, within HUW76_01345at 263.770 kb on + strand, within HUW76_01345at 263.791 kb on + strand, within HUW76_01345at 263.799 kb on - strand, within HUW76_01345at 263.799 kb on - strand, within HUW76_01345at 263.826 kb on - strand, within HUW76_01345at 263.826 kb on - strand, within HUW76_01345at 263.842 kb on - strand, within HUW76_01345at 263.842 kb on - strand, within HUW76_01345at 263.842 kb on - strand, within HUW76_01345at 263.919 kb on + strand, within HUW76_01345at 263.919 kb on + strand, within HUW76_01345at 263.932 kb on + strand, within HUW76_01345at 263.932 kb on + strand, within HUW76_01345at 264.107 kb on + strandat 264.125 kb on - strandat 264.125 kb on - strandat 264.125 kb on - strandat 264.203 kb on + strand, within HUW76_01350at 264.203 kb on + strand, within HUW76_01350at 264.203 kb on + strand, within HUW76_01350at 264.203 kb on + strand, within HUW76_01350at 264.203 kb on + strand, within HUW76_01350at 264.203 kb on + strand, within HUW76_01350at 264.204 kb on - strand, within HUW76_01350at 264.357 kb on + strand, within HUW76_01350at 264.357 kb on + strand, within HUW76_01350at 264.365 kb on - strand, within HUW76_01350at 264.365 kb on - strand, within HUW76_01350at 264.365 kb on - strand, within HUW76_01350at 264.365 kb on - strand, within HUW76_01350at 264.374 kb on + strand, within HUW76_01350at 264.374 kb on + strand, within HUW76_01350at 264.419 kb on + strand, within HUW76_01350at 264.419 kb on + strand, within HUW76_01350at 264.420 kb on + strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.428 kb on - strand, within HUW76_01350at 264.428 kb on - strand, within HUW76_01350at 264.453 kb on - strand, within HUW76_01350at 264.453 kb on - strand, within HUW76_01350at 264.486 kb on + strand, within HUW76_01350at 264.486 kb on + strand, within HUW76_01350at 264.489 kb on + strand, within HUW76_01350at 264.489 kb on + strand, within HUW76_01350at 264.489 kb on - strand, within HUW76_01350at 264.489 kb on - strand, within HUW76_01350at 264.527 kb on + strand, within HUW76_01350at 264.528 kb on + strand, within HUW76_01350at 264.528 kb on + strand, within HUW76_01350at 264.535 kb on - strand, within HUW76_01350at 264.535 kb on - strand, within HUW76_01350at 264.541 kb on + strand, within HUW76_01350at 264.546 kb on + strand, within HUW76_01350at 264.547 kb on + strand, within HUW76_01350at 264.547 kb on + strand, within HUW76_01350at 264.626 kb on - strand, within HUW76_01350at 264.651 kb on - strand, within HUW76_01350at 264.651 kb on - strand, within HUW76_01350at 264.709 kb on + strand, within HUW76_01350at 264.709 kb on + strand, within HUW76_01350at 264.816 kb on + strand, within HUW76_01350at 264.816 kb on + strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.840 kb on + strand, within HUW76_01350at 264.845 kb on + strand, within HUW76_01350at 264.845 kb on + strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.850 kb on + strand, within HUW76_01350at 264.850 kb on + strand, within HUW76_01350at 264.851 kb on + strand, within HUW76_01350at 264.851 kb on + strand, within HUW76_01350at 264.859 kb on - strand, within HUW76_01350at 264.859 kb on - strand, within HUW76_01350at 264.861 kb on + strand, within HUW76_01350at 264.926 kb on + strand, within HUW76_01350at 264.926 kb on + strand, within HUW76_01350at 265.024 kb on + strand, within HUW76_01350at 265.024 kb on + strand, within HUW76_01350at 265.061 kb on + strand, within HUW76_01350at 265.061 kb on + strand, within HUW76_01350at 265.069 kb on - strand, within HUW76_01350at 265.069 kb on - strand, within HUW76_01350at 265.103 kb on + strand, within HUW76_01350at 265.119 kb on + strand, within HUW76_01350at 265.119 kb on + strand, within HUW76_01350at 265.125 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.240 kb on + strandat 265.460 kb on + strandat 265.515 kb on - strand, within HUW76_01355at 265.575 kb on - strand, within HUW76_01355at 265.601 kb on + strand, within HUW76_01355at 265.601 kb on + strand, within HUW76_01355at 265.622 kb on - strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.640 kb on - strand, within HUW76_01355at 265.640 kb on - strand, within HUW76_01355at 265.642 kb on - strand, within HUW76_01355at 265.693 kb on + strand, within HUW76_01355at 265.693 kb on + strand, within HUW76_01355at 265.724 kb on + strand, within HUW76_01355at 265.724 kb on + strand, within HUW76_01355at 265.731 kb on - strand, within HUW76_01355at 265.731 kb on - strand, within HUW76_01355at 265.757 kb on + strand, within HUW76_01355at 265.757 kb on + strand, within HUW76_01355at 265.789 kb on - strand, within HUW76_01355at 265.892 kb on + strand, within HUW76_01355at 265.900 kb on - strand, within HUW76_01355at 266.002 kb on - strand, within HUW76_01355at 266.002 kb on - strand, within HUW76_01355at 266.092 kb on - strand, within HUW76_01355at 266.096 kb on + strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.165 kb on + strand, within HUW76_01355at 266.173 kb on - strand, within HUW76_01355at 266.190 kb on + strand, within HUW76_01355at 266.190 kb on + strand, within HUW76_01355at 266.363 kb on + strand, within HUW76_01355

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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263,132 - HUW76_01340 0.64 -2.9
263,209 - HUW76_01340 0.76 -3.3
263,219 + HUW76_01340 0.78 -2.5
263,219 + HUW76_01340 0.78 -0.2
263,331 + -4.7
263,377 + -0.5
263,377 + -2.1
263,377 + -2.0
263,377 + -0.3
263,377 + -1.4
263,377 - -1.2
263,377 - -2.1
263,382 + -0.4
263,382 + -0.9
263,382 + -0.8
263,385 - -1.4
263,385 - -2.3
263,385 - -1.8
263,443 + -0.9
263,443 + -1.1
263,451 - -3.2
263,655 + HUW76_01345 0.15 -0.1
263,709 + HUW76_01345 0.28 -0.7
263,709 + HUW76_01345 0.28 -1.1
263,770 + HUW76_01345 0.42 -0.0
263,770 + HUW76_01345 0.42 -0.4
263,791 + HUW76_01345 0.47 -0.7
263,799 - HUW76_01345 0.49 -1.0
263,799 - HUW76_01345 0.49 -2.7
263,826 - HUW76_01345 0.56 -3.4
263,826 - HUW76_01345 0.56 -3.6
263,842 - HUW76_01345 0.59 -3.9
263,842 - HUW76_01345 0.59 -3.6
263,842 - HUW76_01345 0.59 -2.8
263,919 + HUW76_01345 0.77 +0.3
263,919 + HUW76_01345 0.77 +0.4
263,932 + HUW76_01345 0.81 -1.4
263,932 + HUW76_01345 0.81 -0.3
264,107 + -6.1
264,125 - -0.3
264,125 - -2.7
264,125 - -1.1
264,203 + HUW76_01350 0.10 -6.4
264,203 + HUW76_01350 0.10 -4.9
264,203 + HUW76_01350 0.10 -2.1
264,203 + HUW76_01350 0.10 -4.9
264,203 + HUW76_01350 0.10 -6.3
264,203 + HUW76_01350 0.10 -5.5
264,204 - HUW76_01350 0.11 -5.5
264,357 + HUW76_01350 0.22 -6.2
264,357 + HUW76_01350 0.22 -5.6
264,365 - HUW76_01350 0.23 -4.1
264,365 - HUW76_01350 0.23 -1.2
264,365 - HUW76_01350 0.23 -2.6
264,365 - HUW76_01350 0.23 -3.3
264,374 + HUW76_01350 0.24 -5.2
264,374 + HUW76_01350 0.24 -2.9
264,419 + HUW76_01350 0.27 -4.6
264,419 + HUW76_01350 0.27 -5.1
264,420 + HUW76_01350 0.27 -6.1
264,420 - HUW76_01350 0.27 -3.3
264,420 - HUW76_01350 0.27 -3.3
264,420 - HUW76_01350 0.27 -4.3
264,428 - HUW76_01350 0.28 -4.5
264,428 - HUW76_01350 0.28 -4.7
264,453 - HUW76_01350 0.30 -3.7
264,453 - HUW76_01350 0.30 -2.8
264,486 + HUW76_01350 0.32 -4.7
264,486 + HUW76_01350 0.32 -2.9
264,489 + HUW76_01350 0.32 -4.5
264,489 + HUW76_01350 0.32 -4.0
264,489 - HUW76_01350 0.32 -3.3
264,489 - HUW76_01350 0.32 -2.0
264,527 + HUW76_01350 0.35 -5.8
264,528 + HUW76_01350 0.35 -3.0
264,528 + HUW76_01350 0.35 -5.9
264,535 - HUW76_01350 0.36 -5.0
264,535 - HUW76_01350 0.36 -2.3
264,541 + HUW76_01350 0.36 -4.1
264,546 + HUW76_01350 0.37 -5.6
264,547 + HUW76_01350 0.37 -4.8
264,547 + HUW76_01350 0.37 -4.1
264,626 - HUW76_01350 0.43 -2.3
264,651 - HUW76_01350 0.45 -2.4
264,651 - HUW76_01350 0.45 -2.3
264,709 + HUW76_01350 0.49 -4.6
264,709 + HUW76_01350 0.49 -4.6
264,816 + HUW76_01350 0.58 -5.6
264,816 + HUW76_01350 0.58 -6.2
264,824 - HUW76_01350 0.58 +0.7
264,824 - HUW76_01350 0.58 +0.0
264,824 - HUW76_01350 0.58 -2.3
264,824 - HUW76_01350 0.58 -4.7
264,824 - HUW76_01350 0.58 -0.5
264,826 + HUW76_01350 0.58 +0.0
264,826 + HUW76_01350 0.58 -4.1
264,826 + HUW76_01350 0.58 -1.0
264,826 + HUW76_01350 0.58 -3.8
264,840 + HUW76_01350 0.60 -3.4
264,845 + HUW76_01350 0.60 -3.9
264,845 + HUW76_01350 0.60 -5.0
264,848 - HUW76_01350 0.60 -3.7
264,848 - HUW76_01350 0.60 -0.3
264,848 - HUW76_01350 0.60 -1.5
264,850 + HUW76_01350 0.60 -2.5
264,850 + HUW76_01350 0.60 -5.0
264,851 + HUW76_01350 0.60 -5.1
264,851 + HUW76_01350 0.60 -4.6
264,859 - HUW76_01350 0.61 -1.7
264,859 - HUW76_01350 0.61 -2.3
264,861 + HUW76_01350 0.61 -5.7
264,926 + HUW76_01350 0.66 -4.5
264,926 + HUW76_01350 0.66 -5.1
265,024 + HUW76_01350 0.74 -5.1
265,024 + HUW76_01350 0.74 -2.3
265,061 + HUW76_01350 0.77 -3.4
265,061 + HUW76_01350 0.77 -5.7
265,069 - HUW76_01350 0.77 -3.6
265,069 - HUW76_01350 0.77 -0.7
265,103 + HUW76_01350 0.80 -5.7
265,119 + HUW76_01350 0.81 -4.0
265,119 + HUW76_01350 0.81 -3.5
265,125 + HUW76_01350 0.81 -5.6
265,205 + HUW76_01350 0.88 -1.9
265,205 + HUW76_01350 0.88 -3.3
265,205 + HUW76_01350 0.88 -4.9
265,205 + HUW76_01350 0.88 -4.7
265,205 + HUW76_01350 0.88 -6.1
265,240 + -5.7
265,460 + +0.0
265,515 - HUW76_01355 0.12 -2.9
265,575 - HUW76_01355 0.17 -4.7
265,601 + HUW76_01355 0.20 -3.6
265,601 + HUW76_01355 0.20 -2.3
265,622 - HUW76_01355 0.21 -2.4
265,634 + HUW76_01355 0.22 -3.8
265,634 + HUW76_01355 0.22 -3.3
265,634 + HUW76_01355 0.22 -1.2
265,640 - HUW76_01355 0.23 -2.7
265,640 - HUW76_01355 0.23 -1.9
265,642 - HUW76_01355 0.23 -5.4
265,693 + HUW76_01355 0.27 -2.9
265,693 + HUW76_01355 0.27 -3.9
265,724 + HUW76_01355 0.30 -2.2
265,724 + HUW76_01355 0.30 -0.9
265,731 - HUW76_01355 0.31 -3.3
265,731 - HUW76_01355 0.31 -2.8
265,757 + HUW76_01355 0.33 -3.5
265,757 + HUW76_01355 0.33 -3.3
265,789 - HUW76_01355 0.35 -4.9
265,892 + HUW76_01355 0.44 -5.1
265,900 - HUW76_01355 0.45 -1.3
266,002 - HUW76_01355 0.53 -1.4
266,002 - HUW76_01355 0.53 -2.6
266,092 - HUW76_01355 0.61 -3.2
266,096 + HUW76_01355 0.61 -3.1
266,104 - HUW76_01355 0.62 -1.4
266,104 - HUW76_01355 0.62 -3.6
266,104 - HUW76_01355 0.62 -3.2
266,104 - HUW76_01355 0.62 -1.1
266,104 - HUW76_01355 0.62 -2.3
266,104 - HUW76_01355 0.62 -1.1
266,104 - HUW76_01355 0.62 -4.7
266,104 - HUW76_01355 0.62 -1.6
266,104 - HUW76_01355 0.62 -3.4
266,165 + HUW76_01355 0.67 -4.9
266,173 - HUW76_01355 0.68 -3.4
266,190 + HUW76_01355 0.69 -3.7
266,190 + HUW76_01355 0.69 -3.1
266,363 + HUW76_01355 0.84 -5.4

Or see this region's nucleotide sequence