Experiment: G1M1_D7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_01045 and HUW76_01050 are separated by 15 nucleotides HUW76_01050 and HUW76_01055 are separated by 450 nucleotides
HUW76_01045: HUW76_01045 - single-stranded-DNA-specific exonuclease RecJ, at 192,510 to 194,174
_01045
HUW76_01050: HUW76_01050 - trigger factor, at 194,190 to 195,485
_01050
HUW76_01055: HUW76_01055 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 195,936 to 196,517
_01055
Position (kb) 194
195
196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 193.223 kb on + strand, within HUW76_01045 at 193.223 kb on + strand, within HUW76_01045 at 193.224 kb on + strand, within HUW76_01045 at 193.230 kb on + strand, within HUW76_01045 at 193.301 kb on + strand, within HUW76_01045 at 193.308 kb on + strand, within HUW76_01045 at 193.388 kb on + strand, within HUW76_01045 at 193.667 kb on + strand, within HUW76_01045 at 194.021 kb on + strand at 194.091 kb on + strand at 194.258 kb on + strand at 194.328 kb on + strand, within HUW76_01050 at 194.341 kb on + strand, within HUW76_01050 at 194.360 kb on + strand, within HUW76_01050 at 194.445 kb on + strand, within HUW76_01050 at 194.445 kb on + strand, within HUW76_01050 at 194.445 kb on + strand, within HUW76_01050 at 194.445 kb on + strand, within HUW76_01050 at 194.445 kb on + strand, within HUW76_01050 at 194.446 kb on + strand, within HUW76_01050 at 194.455 kb on + strand, within HUW76_01050 at 194.506 kb on + strand, within HUW76_01050 at 194.540 kb on + strand, within HUW76_01050 at 194.715 kb on + strand, within HUW76_01050 at 194.715 kb on + strand, within HUW76_01050 at 194.835 kb on + strand, within HUW76_01050 at 194.835 kb on + strand, within HUW76_01050 at 194.847 kb on + strand, within HUW76_01050 at 194.900 kb on + strand, within HUW76_01050 at 194.900 kb on + strand, within HUW76_01050 at 195.163 kb on + strand, within HUW76_01050 at 195.211 kb on + strand, within HUW76_01050 at 195.211 kb on + strand, within HUW76_01050 at 195.344 kb on + strand, within HUW76_01050 at 195.407 kb on + strand at 195.571 kb on + strand at 195.807 kb on + strand at 196.180 kb on + strand, within HUW76_01055
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D7 remove 193,223 + HUW76_01045 0.43 -0.2 193,223 + HUW76_01045 0.43 +1.2 193,224 + HUW76_01045 0.43 +0.5 193,230 + HUW76_01045 0.43 -0.2 193,301 + HUW76_01045 0.48 -1.8 193,308 + HUW76_01045 0.48 -0.0 193,388 + HUW76_01045 0.53 +1.5 193,667 + HUW76_01045 0.69 -0.4 194,021 + +1.0 194,091 + +1.5 194,258 + -3.2 194,328 + HUW76_01050 0.11 -3.8 194,341 + HUW76_01050 0.12 -1.2 194,360 + HUW76_01050 0.13 -3.1 194,445 + HUW76_01050 0.20 -4.2 194,445 + HUW76_01050 0.20 -1.9 194,445 + HUW76_01050 0.20 -3.1 194,445 + HUW76_01050 0.20 -3.6 194,445 + HUW76_01050 0.20 -3.6 194,446 + HUW76_01050 0.20 -3.3 194,455 + HUW76_01050 0.20 -3.8 194,506 + HUW76_01050 0.24 -2.7 194,540 + HUW76_01050 0.27 -1.7 194,715 + HUW76_01050 0.41 -0.2 194,715 + HUW76_01050 0.41 -2.1 194,835 + HUW76_01050 0.50 -1.1 194,835 + HUW76_01050 0.50 -1.6 194,847 + HUW76_01050 0.51 -1.8 194,900 + HUW76_01050 0.55 -0.1 194,900 + HUW76_01050 0.55 -2.0 195,163 + HUW76_01050 0.75 -2.5 195,211 + HUW76_01050 0.79 -1.0 195,211 + HUW76_01050 0.79 +1.0 195,344 + HUW76_01050 0.89 -3.3 195,407 + -4.6 195,571 + +1.2 195,807 + -0.5 196,180 + HUW76_01055 0.42 -0.7
Or see this region's nucleotide sequence