Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01030

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01025 and HUW76_01030 overlap by 8 nucleotidesHUW76_01030 and HUW76_01035 overlap by 4 nucleotides HUW76_01025: HUW76_01025 - transcription termination/antitermination protein NusA, at 188,282 to 189,361 _01025 HUW76_01030: HUW76_01030 - DUF448 domain-containing protein, at 189,354 to 189,884 _01030 HUW76_01035: HUW76_01035 - translation initiation factor IF-2, at 189,881 to 192,124 _01035 Position (kb) 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1at 189.306 kb on + strandat 189.336 kb on + strandat 189.356 kb on + strandat 189.364 kb on + strandat 189.364 kb on + strandat 189.422 kb on + strand, within HUW76_01030at 189.490 kb on + strand, within HUW76_01030at 189.544 kb on + strand, within HUW76_01030at 189.564 kb on + strand, within HUW76_01030at 189.564 kb on + strand, within HUW76_01030at 189.576 kb on + strand, within HUW76_01030at 189.708 kb on + strand, within HUW76_01030at 189.708 kb on + strand, within HUW76_01030

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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189,306 + +0.6
189,336 + +0.8
189,356 + -3.3
189,364 + +0.8
189,364 + +1.0
189,422 + HUW76_01030 0.13 -0.0
189,490 + HUW76_01030 0.26 -1.4
189,544 + HUW76_01030 0.36 -2.8
189,564 + HUW76_01030 0.40 -0.9
189,564 + HUW76_01030 0.40 -1.6
189,576 + HUW76_01030 0.42 -1.8
189,708 + HUW76_01030 0.67 +0.6
189,708 + HUW76_01030 0.67 -0.3

Or see this region's nucleotide sequence