Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00760

Experiment: G1M1_D7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_00750 and HUW76_00755 are separated by 288 nucleotidesHUW76_00755 and HUW76_00760 are separated by 216 nucleotidesHUW76_00760 and HUW76_00765 are separated by 350 nucleotides HUW76_00750: HUW76_00750 - ABC transporter ATP-binding protein, at 141,765 to 142,895 _00750 HUW76_00755: HUW76_00755 - hypothetical protein, at 143,184 to 143,423 _00755 HUW76_00760: HUW76_00760 - HPr family phosphocarrier protein, at 143,640 to 143,903 _00760 HUW76_00765: HUW76_00765 - phosphoenolpyruvate--protein phosphotransferase, at 144,254 to 145,969 _00765 Position (kb) 143 144Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 142.678 kb on - strand, within HUW76_00750at 142.678 kb on - strand, within HUW76_00750at 142.692 kb on + strand, within HUW76_00750at 142.816 kb on - strandat 142.816 kb on - strandat 142.819 kb on + strandat 142.819 kb on + strandat 142.836 kb on + strandat 142.875 kb on + strandat 142.875 kb on + strandat 143.132 kb on - strandat 143.175 kb on - strandat 143.252 kb on + strand, within HUW76_00755at 143.257 kb on + strand, within HUW76_00755at 143.408 kb on + strandat 143.408 kb on + strandat 143.433 kb on - strandat 143.433 kb on - strandat 143.471 kb on - strandat 143.584 kb on + strandat 143.584 kb on + strandat 143.586 kb on + strandat 143.586 kb on + strandat 143.586 kb on + strandat 143.586 kb on + strandat 143.592 kb on - strandat 143.592 kb on - strandat 143.617 kb on - strandat 143.617 kb on - strandat 143.630 kb on + strandat 143.666 kb on + strandat 143.681 kb on + strand, within HUW76_00760at 143.681 kb on + strand, within HUW76_00760at 143.683 kb on + strand, within HUW76_00760at 143.683 kb on + strand, within HUW76_00760at 143.684 kb on + strand, within HUW76_00760at 143.735 kb on + strand, within HUW76_00760at 143.743 kb on - strand, within HUW76_00760at 143.758 kb on + strand, within HUW76_00760at 143.758 kb on + strand, within HUW76_00760at 143.765 kb on + strand, within HUW76_00760at 143.766 kb on - strand, within HUW76_00760at 143.773 kb on + strand, within HUW76_00760at 143.773 kb on + strand, within HUW76_00760at 143.773 kb on + strand, within HUW76_00760at 143.773 kb on + strand, within HUW76_00760at 143.826 kb on + strand, within HUW76_00760at 143.826 kb on + strand, within HUW76_00760at 143.827 kb on + strand, within HUW76_00760at 143.827 kb on + strand, within HUW76_00760at 143.827 kb on + strand, within HUW76_00760at 143.829 kb on + strand, within HUW76_00760at 143.836 kb on - strand, within HUW76_00760at 143.836 kb on - strand, within HUW76_00760at 143.852 kb on + strand, within HUW76_00760at 143.852 kb on + strand, within HUW76_00760at 143.878 kb on - strandat 143.898 kb on + strandat 143.898 kb on + strandat 143.912 kb on + strandat 143.912 kb on + strandat 144.145 kb on + strandat 144.209 kb on + strandat 144.217 kb on - strandat 144.217 kb on - strandat 144.238 kb on + strandat 144.241 kb on - strandat 144.241 kb on - strandat 144.280 kb on + strandat 144.280 kb on + strandat 144.302 kb on + strandat 144.302 kb on + strandat 144.457 kb on + strand, within HUW76_00765at 144.459 kb on - strand, within HUW76_00765at 144.473 kb on + strand, within HUW76_00765at 144.475 kb on + strand, within HUW76_00765at 144.475 kb on + strand, within HUW76_00765at 144.483 kb on - strand, within HUW76_00765at 144.483 kb on - strand, within HUW76_00765at 144.570 kb on - strand, within HUW76_00765at 144.572 kb on + strand, within HUW76_00765at 144.572 kb on + strand, within HUW76_00765at 144.572 kb on + strand, within HUW76_00765at 144.580 kb on + strand, within HUW76_00765at 144.627 kb on + strand, within HUW76_00765at 144.661 kb on + strand, within HUW76_00765at 144.661 kb on + strand, within HUW76_00765at 144.661 kb on + strand, within HUW76_00765at 144.669 kb on - strand, within HUW76_00765at 144.687 kb on + strand, within HUW76_00765at 144.776 kb on + strand, within HUW76_00765at 144.807 kb on + strand, within HUW76_00765at 144.817 kb on + strand, within HUW76_00765at 144.817 kb on + strand, within HUW76_00765at 144.819 kb on + strand, within HUW76_00765at 144.819 kb on + strand, within HUW76_00765at 144.819 kb on + strand, within HUW76_00765at 144.825 kb on - strand, within HUW76_00765at 144.825 kb on - strand, within HUW76_00765at 144.825 kb on - strand, within HUW76_00765at 144.825 kb on - strand, within HUW76_00765at 144.870 kb on - strand, within HUW76_00765at 144.872 kb on + strand, within HUW76_00765at 144.880 kb on - strand, within HUW76_00765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
remove
142,678 - HUW76_00750 0.81 -2.2
142,678 - HUW76_00750 0.81 -2.9
142,692 + HUW76_00750 0.82 -4.1
142,816 - -4.2
142,816 - -5.7
142,819 + -4.3
142,819 + -1.8
142,836 + -4.6
142,875 + -5.0
142,875 + -4.7
143,132 - -0.4
143,175 - -1.3
143,252 + HUW76_00755 0.28 +0.3
143,257 + HUW76_00755 0.30 -0.7
143,408 + -0.2
143,408 + -1.8
143,433 - -1.7
143,433 - -1.6
143,471 - -1.8
143,584 + -2.3
143,584 + +0.6
143,586 + +0.7
143,586 + -0.4
143,586 + +0.3
143,586 + +0.2
143,592 - -0.6
143,592 - -0.6
143,617 - -1.3
143,617 - -1.0
143,630 + -3.5
143,666 + -1.7
143,681 + HUW76_00760 0.16 +0.8
143,681 + HUW76_00760 0.16 -2.6
143,683 + HUW76_00760 0.16 -4.5
143,683 + HUW76_00760 0.16 -2.9
143,684 + HUW76_00760 0.17 -3.9
143,735 + HUW76_00760 0.36 -4.8
143,743 - HUW76_00760 0.39 +0.3
143,758 + HUW76_00760 0.45 -0.1
143,758 + HUW76_00760 0.45 -4.2
143,765 + HUW76_00760 0.47 -4.4
143,766 - HUW76_00760 0.48 -2.5
143,773 + HUW76_00760 0.50 -3.7
143,773 + HUW76_00760 0.50 -2.7
143,773 + HUW76_00760 0.50 -3.6
143,773 + HUW76_00760 0.50 -3.7
143,826 + HUW76_00760 0.70 -3.4
143,826 + HUW76_00760 0.70 -3.9
143,827 + HUW76_00760 0.71 -3.3
143,827 + HUW76_00760 0.71 -1.3
143,827 + HUW76_00760 0.71 -2.9
143,829 + HUW76_00760 0.72 -4.2
143,836 - HUW76_00760 0.74 +0.8
143,836 - HUW76_00760 0.74 -0.3
143,852 + HUW76_00760 0.80 -3.6
143,852 + HUW76_00760 0.80 -2.7
143,878 - -0.3
143,898 + +0.6
143,898 + -0.2
143,912 + +0.4
143,912 + +0.5
144,145 + -0.4
144,209 + -0.4
144,217 - -3.7
144,217 - -2.1
144,238 + +1.1
144,241 - -2.5
144,241 - -3.0
144,280 + -1.7
144,280 + -4.0
144,302 + -2.9
144,302 + -0.8
144,457 + HUW76_00765 0.12 -3.5
144,459 - HUW76_00765 0.12 -1.4
144,473 + HUW76_00765 0.13 -4.9
144,475 + HUW76_00765 0.13 -1.2
144,475 + HUW76_00765 0.13 -2.0
144,483 - HUW76_00765 0.13 -2.0
144,483 - HUW76_00765 0.13 +0.3
144,570 - HUW76_00765 0.18 +3.8
144,572 + HUW76_00765 0.19 -0.4
144,572 + HUW76_00765 0.19 -1.1
144,572 + HUW76_00765 0.19 -3.1
144,580 + HUW76_00765 0.19 -3.7
144,627 + HUW76_00765 0.22 -2.2
144,661 + HUW76_00765 0.24 -1.2
144,661 + HUW76_00765 0.24 -0.9
144,661 + HUW76_00765 0.24 -3.4
144,669 - HUW76_00765 0.24 -0.4
144,687 + HUW76_00765 0.25 -3.2
144,776 + HUW76_00765 0.30 -3.4
144,807 + HUW76_00765 0.32 -3.4
144,817 + HUW76_00765 0.33 -3.4
144,817 + HUW76_00765 0.33 -2.7
144,819 + HUW76_00765 0.33 -1.3
144,819 + HUW76_00765 0.33 -3.6
144,819 + HUW76_00765 0.33 -3.0
144,825 - HUW76_00765 0.33 -2.5
144,825 - HUW76_00765 0.33 -2.4
144,825 - HUW76_00765 0.33 -1.7
144,825 - HUW76_00765 0.33 -1.8
144,870 - HUW76_00765 0.36 -2.5
144,872 + HUW76_00765 0.36 -1.0
144,880 - HUW76_00765 0.36 -3.0

Or see this region's nucleotide sequence