Experiment: G1M1_D7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_00750 and HUW76_00755 are separated by 288 nucleotides HUW76_00755 and HUW76_00760 are separated by 216 nucleotides HUW76_00760 and HUW76_00765 are separated by 350 nucleotides
HUW76_00750: HUW76_00750 - ABC transporter ATP-binding protein, at 141,765 to 142,895
_00750
HUW76_00755: HUW76_00755 - hypothetical protein, at 143,184 to 143,423
_00755
HUW76_00760: HUW76_00760 - HPr family phosphocarrier protein, at 143,640 to 143,903
_00760
HUW76_00765: HUW76_00765 - phosphoenolpyruvate--protein phosphotransferase, at 144,254 to 145,969
_00765
Position (kb)
143
144 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 142.678 kb on - strand, within HUW76_00750 at 142.678 kb on - strand, within HUW76_00750 at 142.692 kb on + strand, within HUW76_00750 at 142.816 kb on - strand at 142.816 kb on - strand at 142.819 kb on + strand at 142.819 kb on + strand at 142.836 kb on + strand at 142.875 kb on + strand at 142.875 kb on + strand at 143.132 kb on - strand at 143.175 kb on - strand at 143.252 kb on + strand, within HUW76_00755 at 143.257 kb on + strand, within HUW76_00755 at 143.408 kb on + strand at 143.408 kb on + strand at 143.433 kb on - strand at 143.433 kb on - strand at 143.471 kb on - strand at 143.584 kb on + strand at 143.584 kb on + strand at 143.586 kb on + strand at 143.586 kb on + strand at 143.586 kb on + strand at 143.586 kb on + strand at 143.592 kb on - strand at 143.592 kb on - strand at 143.617 kb on - strand at 143.617 kb on - strand at 143.630 kb on + strand at 143.666 kb on + strand at 143.681 kb on + strand, within HUW76_00760 at 143.681 kb on + strand, within HUW76_00760 at 143.683 kb on + strand, within HUW76_00760 at 143.683 kb on + strand, within HUW76_00760 at 143.684 kb on + strand, within HUW76_00760 at 143.735 kb on + strand, within HUW76_00760 at 143.743 kb on - strand, within HUW76_00760 at 143.758 kb on + strand, within HUW76_00760 at 143.758 kb on + strand, within HUW76_00760 at 143.765 kb on + strand, within HUW76_00760 at 143.766 kb on - strand, within HUW76_00760 at 143.773 kb on + strand, within HUW76_00760 at 143.773 kb on + strand, within HUW76_00760 at 143.773 kb on + strand, within HUW76_00760 at 143.773 kb on + strand, within HUW76_00760 at 143.826 kb on + strand, within HUW76_00760 at 143.826 kb on + strand, within HUW76_00760 at 143.827 kb on + strand, within HUW76_00760 at 143.827 kb on + strand, within HUW76_00760 at 143.827 kb on + strand, within HUW76_00760 at 143.829 kb on + strand, within HUW76_00760 at 143.836 kb on - strand, within HUW76_00760 at 143.836 kb on - strand, within HUW76_00760 at 143.852 kb on + strand, within HUW76_00760 at 143.852 kb on + strand, within HUW76_00760 at 143.878 kb on - strand at 143.898 kb on + strand at 143.898 kb on + strand at 143.912 kb on + strand at 143.912 kb on + strand at 144.145 kb on + strand at 144.209 kb on + strand at 144.217 kb on - strand at 144.217 kb on - strand at 144.238 kb on + strand at 144.241 kb on - strand at 144.241 kb on - strand at 144.280 kb on + strand at 144.280 kb on + strand at 144.302 kb on + strand at 144.302 kb on + strand at 144.457 kb on + strand, within HUW76_00765 at 144.459 kb on - strand, within HUW76_00765 at 144.473 kb on + strand, within HUW76_00765 at 144.475 kb on + strand, within HUW76_00765 at 144.475 kb on + strand, within HUW76_00765 at 144.483 kb on - strand, within HUW76_00765 at 144.483 kb on - strand, within HUW76_00765 at 144.570 kb on - strand, within HUW76_00765 at 144.572 kb on + strand, within HUW76_00765 at 144.572 kb on + strand, within HUW76_00765 at 144.572 kb on + strand, within HUW76_00765 at 144.580 kb on + strand, within HUW76_00765 at 144.627 kb on + strand, within HUW76_00765 at 144.661 kb on + strand, within HUW76_00765 at 144.661 kb on + strand, within HUW76_00765 at 144.661 kb on + strand, within HUW76_00765 at 144.669 kb on - strand, within HUW76_00765 at 144.687 kb on + strand, within HUW76_00765 at 144.776 kb on + strand, within HUW76_00765 at 144.807 kb on + strand, within HUW76_00765 at 144.817 kb on + strand, within HUW76_00765 at 144.817 kb on + strand, within HUW76_00765 at 144.819 kb on + strand, within HUW76_00765 at 144.819 kb on + strand, within HUW76_00765 at 144.819 kb on + strand, within HUW76_00765 at 144.825 kb on - strand, within HUW76_00765 at 144.825 kb on - strand, within HUW76_00765 at 144.825 kb on - strand, within HUW76_00765 at 144.825 kb on - strand, within HUW76_00765 at 144.870 kb on - strand, within HUW76_00765 at 144.872 kb on + strand, within HUW76_00765 at 144.880 kb on - strand, within HUW76_00765
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D7 remove 142,678 - HUW76_00750 0.81 -2.2 142,678 - HUW76_00750 0.81 -2.9 142,692 + HUW76_00750 0.82 -4.1 142,816 - -4.2 142,816 - -5.7 142,819 + -4.3 142,819 + -1.8 142,836 + -4.6 142,875 + -5.0 142,875 + -4.7 143,132 - -0.4 143,175 - -1.3 143,252 + HUW76_00755 0.28 +0.3 143,257 + HUW76_00755 0.30 -0.7 143,408 + -0.2 143,408 + -1.8 143,433 - -1.7 143,433 - -1.6 143,471 - -1.8 143,584 + -2.3 143,584 + +0.6 143,586 + +0.7 143,586 + -0.4 143,586 + +0.3 143,586 + +0.2 143,592 - -0.6 143,592 - -0.6 143,617 - -1.3 143,617 - -1.0 143,630 + -3.5 143,666 + -1.7 143,681 + HUW76_00760 0.16 +0.8 143,681 + HUW76_00760 0.16 -2.6 143,683 + HUW76_00760 0.16 -4.5 143,683 + HUW76_00760 0.16 -2.9 143,684 + HUW76_00760 0.17 -3.9 143,735 + HUW76_00760 0.36 -4.8 143,743 - HUW76_00760 0.39 +0.3 143,758 + HUW76_00760 0.45 -0.1 143,758 + HUW76_00760 0.45 -4.2 143,765 + HUW76_00760 0.47 -4.4 143,766 - HUW76_00760 0.48 -2.5 143,773 + HUW76_00760 0.50 -3.7 143,773 + HUW76_00760 0.50 -2.7 143,773 + HUW76_00760 0.50 -3.6 143,773 + HUW76_00760 0.50 -3.7 143,826 + HUW76_00760 0.70 -3.4 143,826 + HUW76_00760 0.70 -3.9 143,827 + HUW76_00760 0.71 -3.3 143,827 + HUW76_00760 0.71 -1.3 143,827 + HUW76_00760 0.71 -2.9 143,829 + HUW76_00760 0.72 -4.2 143,836 - HUW76_00760 0.74 +0.8 143,836 - HUW76_00760 0.74 -0.3 143,852 + HUW76_00760 0.80 -3.6 143,852 + HUW76_00760 0.80 -2.7 143,878 - -0.3 143,898 + +0.6 143,898 + -0.2 143,912 + +0.4 143,912 + +0.5 144,145 + -0.4 144,209 + -0.4 144,217 - -3.7 144,217 - -2.1 144,238 + +1.1 144,241 - -2.5 144,241 - -3.0 144,280 + -1.7 144,280 + -4.0 144,302 + -2.9 144,302 + -0.8 144,457 + HUW76_00765 0.12 -3.5 144,459 - HUW76_00765 0.12 -1.4 144,473 + HUW76_00765 0.13 -4.9 144,475 + HUW76_00765 0.13 -1.2 144,475 + HUW76_00765 0.13 -2.0 144,483 - HUW76_00765 0.13 -2.0 144,483 - HUW76_00765 0.13 +0.3 144,570 - HUW76_00765 0.18 +3.8 144,572 + HUW76_00765 0.19 -0.4 144,572 + HUW76_00765 0.19 -1.1 144,572 + HUW76_00765 0.19 -3.1 144,580 + HUW76_00765 0.19 -3.7 144,627 + HUW76_00765 0.22 -2.2 144,661 + HUW76_00765 0.24 -1.2 144,661 + HUW76_00765 0.24 -0.9 144,661 + HUW76_00765 0.24 -3.4 144,669 - HUW76_00765 0.24 -0.4 144,687 + HUW76_00765 0.25 -3.2 144,776 + HUW76_00765 0.30 -3.4 144,807 + HUW76_00765 0.32 -3.4 144,817 + HUW76_00765 0.33 -3.4 144,817 + HUW76_00765 0.33 -2.7 144,819 + HUW76_00765 0.33 -1.3 144,819 + HUW76_00765 0.33 -3.6 144,819 + HUW76_00765 0.33 -3.0 144,825 - HUW76_00765 0.33 -2.5 144,825 - HUW76_00765 0.33 -2.4 144,825 - HUW76_00765 0.33 -1.7 144,825 - HUW76_00765 0.33 -1.8 144,870 - HUW76_00765 0.36 -2.5 144,872 + HUW76_00765 0.36 -1.0 144,880 - HUW76_00765 0.36 -3.0
Or see this region's nucleotide sequence