Experiment: G1M1_D7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_00545 and HUW76_00550 are separated by 44 nucleotides HUW76_00550 and HUW76_00555 overlap by 17 nucleotides
HUW76_00545: HUW76_00545 - sodium/proline symporter PutP, at 107,960 to 109,408
_00545
HUW76_00550: HUW76_00550 - hypothetical protein, at 109,453 to 109,929
_00550
HUW76_00555: HUW76_00555 - serine--tRNA ligase, at 109,913 to 111,178
_00555
Position (kb) 109
110 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 108.491 kb on + strand, within HUW76_00545 at 108.527 kb on + strand, within HUW76_00545 at 108.634 kb on - strand, within HUW76_00545 at 108.634 kb on - strand, within HUW76_00545 at 108.680 kb on + strand, within HUW76_00545 at 108.688 kb on - strand, within HUW76_00545 at 108.745 kb on - strand, within HUW76_00545 at 108.745 kb on - strand, within HUW76_00545 at 108.745 kb on - strand, within HUW76_00545 at 108.745 kb on - strand, within HUW76_00545 at 108.750 kb on - strand, within HUW76_00545 at 108.750 kb on - strand, within HUW76_00545 at 108.784 kb on + strand, within HUW76_00545 at 108.792 kb on - strand, within HUW76_00545 at 108.965 kb on - strand, within HUW76_00545 at 108.965 kb on - strand, within HUW76_00545 at 108.990 kb on - strand, within HUW76_00545 at 108.990 kb on - strand, within HUW76_00545 at 109.025 kb on + strand, within HUW76_00545 at 109.048 kb on - strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.128 kb on + strand, within HUW76_00545 at 109.146 kb on - strand, within HUW76_00545 at 109.156 kb on + strand, within HUW76_00545 at 109.156 kb on + strand, within HUW76_00545 at 109.174 kb on - strand, within HUW76_00545 at 109.174 kb on - strand, within HUW76_00545 at 109.268 kb on - strand at 109.268 kb on - strand at 109.274 kb on - strand at 109.298 kb on - strand at 109.298 kb on - strand at 109.379 kb on - strand at 109.429 kb on + strand at 109.437 kb on + strand at 109.437 kb on + strand at 109.437 kb on + strand at 109.557 kb on - strand, within HUW76_00550 at 109.619 kb on + strand, within HUW76_00550 at 109.736 kb on + strand, within HUW76_00550 at 109.847 kb on + strand, within HUW76_00550 at 109.897 kb on + strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand at 109.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D7 remove 108,491 + HUW76_00545 0.37 +0.7 108,527 + HUW76_00545 0.39 +0.5 108,634 - HUW76_00545 0.47 +0.6 108,634 - HUW76_00545 0.47 -0.7 108,680 + HUW76_00545 0.50 +0.1 108,688 - HUW76_00545 0.50 -0.3 108,745 - HUW76_00545 0.54 +1.9 108,745 - HUW76_00545 0.54 +1.3 108,745 - HUW76_00545 0.54 +0.6 108,745 - HUW76_00545 0.54 -0.6 108,750 - HUW76_00545 0.55 +1.4 108,750 - HUW76_00545 0.55 +0.9 108,784 + HUW76_00545 0.57 +0.2 108,792 - HUW76_00545 0.57 +0.7 108,965 - HUW76_00545 0.69 +0.6 108,965 - HUW76_00545 0.69 +0.7 108,990 - HUW76_00545 0.71 +0.1 108,990 - HUW76_00545 0.71 +0.5 109,025 + HUW76_00545 0.73 +0.2 109,048 - HUW76_00545 0.75 -0.2 109,128 + HUW76_00545 0.81 +0.8 109,128 + HUW76_00545 0.81 -0.2 109,128 + HUW76_00545 0.81 +0.4 109,128 + HUW76_00545 0.81 -0.8 109,128 + HUW76_00545 0.81 -0.1 109,128 + HUW76_00545 0.81 -1.2 109,146 - HUW76_00545 0.82 -2.8 109,156 + HUW76_00545 0.83 +0.4 109,156 + HUW76_00545 0.83 +0.9 109,174 - HUW76_00545 0.84 -0.7 109,174 - HUW76_00545 0.84 +1.9 109,268 - +1.1 109,268 - -0.1 109,274 - -1.6 109,298 - +1.5 109,298 - +1.2 109,379 - +0.2 109,429 + -1.9 109,437 + -1.3 109,437 + +0.4 109,437 + +2.0 109,557 - HUW76_00550 0.22 -0.6 109,619 + HUW76_00550 0.35 -1.7 109,736 + HUW76_00550 0.59 -1.7 109,847 + HUW76_00550 0.83 +0.7 109,897 + -0.6 109,935 - -4.8 109,935 - -3.4 109,935 - -2.0 109,935 - -1.1 109,935 - -2.1 109,935 - -3.7 109,935 - -2.9 109,935 - -2.4 109,935 - -3.9
Or see this region's nucleotide sequence