Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03000 and LRK53_RS03005 are separated by 79 nucleotides LRK53_RS03005 and LRK53_RS03010 are separated by 303 nucleotides
LRK53_RS03000: LRK53_RS03000 - DMT family transporter, at 698,554 to 699,435
_RS03000
LRK53_RS03005: LRK53_RS03005 - DNA-3-methyladenine glycosylase I, at 699,515 to 700,093
_RS03005
LRK53_RS03010: LRK53_RS03010 - hypothetical protein, at 700,397 to 701,170
_RS03010
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.522 kb on + strand at 698.522 kb on + strand at 698.522 kb on + strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.467 kb on + strand at 699.480 kb on + strand at 699.480 kb on + strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.582 kb on - strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.879 kb on - strand, within LRK53_RS03005 at 699.879 kb on - strand, within LRK53_RS03005 at 700.023 kb on - strand, within LRK53_RS03005 at 700.111 kb on + strand at 700.111 kb on + strand at 700.112 kb on - strand at 700.112 kb on - strand at 700.198 kb on + strand at 700.199 kb on - strand at 700.508 kb on - strand, within LRK53_RS03010 at 700.679 kb on - strand, within LRK53_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM remove 698,522 + +1.1 698,522 + -1.5 698,522 + -0.2 698,523 - -0.9 698,523 - -0.7 698,523 - -0.0 698,523 - -0.5 698,523 - -0.2 698,783 + LRK53_RS03000 0.26 +0.7 698,783 + LRK53_RS03000 0.26 -0.9 698,783 + LRK53_RS03000 0.26 -0.6 698,783 + LRK53_RS03000 0.26 +0.7 698,783 + LRK53_RS03000 0.26 -0.6 698,783 + LRK53_RS03000 0.26 -1.5 698,783 + LRK53_RS03000 0.26 +1.8 698,783 + LRK53_RS03000 0.26 -0.9 698,783 + LRK53_RS03000 0.26 -1.5 698,784 - LRK53_RS03000 0.26 -0.9 698,784 - LRK53_RS03000 0.26 -0.9 698,784 - LRK53_RS03000 0.26 -0.7 698,784 - LRK53_RS03000 0.26 +0.5 698,784 - LRK53_RS03000 0.26 +0.8 698,784 - LRK53_RS03000 0.26 +0.4 698,784 - LRK53_RS03000 0.26 -1.0 699,131 + LRK53_RS03000 0.65 -1.8 699,131 + LRK53_RS03000 0.65 -0.2 699,131 + LRK53_RS03000 0.65 +0.1 699,131 + LRK53_RS03000 0.65 -0.1 699,131 + LRK53_RS03000 0.65 +0.1 699,131 + LRK53_RS03000 0.65 -1.2 699,131 + LRK53_RS03000 0.65 +0.1 699,131 + LRK53_RS03000 0.65 +0.1 699,131 + LRK53_RS03000 0.65 -1.2 699,132 - LRK53_RS03000 0.66 -0.7 699,132 - LRK53_RS03000 0.66 -0.5 699,132 - LRK53_RS03000 0.66 -1.2 699,338 + LRK53_RS03000 0.89 +0.1 699,338 + LRK53_RS03000 0.89 -1.8 699,338 + LRK53_RS03000 0.89 +0.1 699,338 + LRK53_RS03000 0.89 -1.1 699,339 - LRK53_RS03000 0.89 +1.1 699,339 - LRK53_RS03000 0.89 -0.5 699,339 - LRK53_RS03000 0.89 -0.7 699,339 - LRK53_RS03000 0.89 +0.1 699,339 - LRK53_RS03000 0.89 -0.9 699,371 + -0.5 699,371 + -0.7 699,371 + -0.3 699,371 + -0.8 699,371 + +1.5 699,372 - +0.5 699,372 - -0.1 699,372 - -1.1 699,372 - +0.1 699,372 - -0.5 699,372 - -1.2 699,467 + -0.5 699,480 + -2.1 699,480 + +0.8 699,481 - +1.1 699,481 - -0.1 699,481 - -1.4 699,481 - +0.7 699,581 + LRK53_RS03005 0.11 -1.1 699,581 + LRK53_RS03005 0.11 -1.2 699,581 + LRK53_RS03005 0.11 +1.7 699,581 + LRK53_RS03005 0.11 +1.1 699,581 + LRK53_RS03005 0.11 +0.1 699,582 - LRK53_RS03005 0.12 -1.2 699,701 + LRK53_RS03005 0.32 +0.7 699,701 + LRK53_RS03005 0.32 -0.9 699,701 + LRK53_RS03005 0.32 +0.1 699,701 + LRK53_RS03005 0.32 -1.3 699,701 + LRK53_RS03005 0.32 -0.5 699,701 + LRK53_RS03005 0.32 +0.1 699,702 - LRK53_RS03005 0.32 +0.1 699,702 - LRK53_RS03005 0.32 +0.4 699,702 - LRK53_RS03005 0.32 +0.6 699,702 - LRK53_RS03005 0.32 -0.5 699,878 + LRK53_RS03005 0.63 -0.5 699,878 + LRK53_RS03005 0.63 -0.5 699,878 + LRK53_RS03005 0.63 -0.9 699,879 - LRK53_RS03005 0.63 -1.7 699,879 - LRK53_RS03005 0.63 +1.8 700,023 - LRK53_RS03005 0.88 -1.2 700,111 + -1.6 700,111 + -1.2 700,112 - -1.6 700,112 - -1.0 700,198 + -1.3 700,199 - -0.9 700,508 - LRK53_RS03010 0.14 -0.5 700,679 - LRK53_RS03010 0.36 -0.8
Or see this region's nucleotide sequence