Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02475 and LRK53_RS02480 are separated by 227 nucleotides LRK53_RS02480 and LRK53_RS02485 are separated by 51 nucleotides LRK53_RS02485 and LRK53_RS02490 overlap by 4 nucleotides LRK53_RS02490 and LRK53_RS02495 are separated by 21 nucleotides
LRK53_RS02475: LRK53_RS02475 - ParB/RepB/Spo0J family partition protein, at 569,096 to 569,965
_RS02475
LRK53_RS02480: LRK53_RS02480 - glycosyltransferase family 2 protein, at 570,193 to 570,909
_RS02480
LRK53_RS02485: LRK53_RS02485 - hypothetical protein, at 570,961 to 571,155
_RS02485
LRK53_RS02490: LRK53_RS02490 - hypothetical protein, at 571,152 to 571,319
_RS02490
LRK53_RS02495: LRK53_RS02495 - hypothetical protein, at 571,341 to 572,099
_RS02495
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.176 kb on + strand at 570.176 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.044 kb on - strand, within LRK53_RS02485 at 571.044 kb on - strand, within LRK53_RS02485 at 571.234 kb on - strand, within LRK53_RS02490 at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.356 kb on + strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.414 kb on + strand at 571.415 kb on - strand at 571.415 kb on - strand at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.667 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.086 kb on + strand at 572.086 kb on + strand at 572.086 kb on + strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM remove 570,139 + -0.5 570,139 + +0.1 570,139 + +0.1 570,139 + +0.1 570,176 + -0.9 570,176 + -0.2 570,955 + -0.8 570,955 + -0.6 570,955 + -0.5 570,955 + +0.5 570,955 + -1.2 570,955 + +0.1 570,956 - -1.7 570,956 - +0.1 570,956 - +0.7 570,956 - -0.9 570,956 - -0.1 571,016 + LRK53_RS02485 0.28 +0.1 571,016 + LRK53_RS02485 0.28 -0.9 571,016 + LRK53_RS02485 0.28 -1.5 571,016 + LRK53_RS02485 0.28 -2.4 571,016 + LRK53_RS02485 0.28 -2.5 571,016 + LRK53_RS02485 0.28 +1.1 571,016 + LRK53_RS02485 0.28 -1.5 571,016 + LRK53_RS02485 0.28 -0.5 571,016 + LRK53_RS02485 0.28 +1.7 571,016 + LRK53_RS02485 0.28 -1.2 571,016 + LRK53_RS02485 0.28 -0.9 571,017 - LRK53_RS02485 0.29 -1.5 571,017 - LRK53_RS02485 0.29 -0.9 571,017 - LRK53_RS02485 0.29 +0.1 571,017 - LRK53_RS02485 0.29 -0.5 571,017 - LRK53_RS02485 0.29 +1.1 571,017 - LRK53_RS02485 0.29 +0.7 571,017 - LRK53_RS02485 0.29 -0.5 571,017 - LRK53_RS02485 0.29 -0.5 571,017 - LRK53_RS02485 0.29 -2.4 571,017 - LRK53_RS02485 0.29 +1.7 571,044 - LRK53_RS02485 0.43 +0.1 571,044 - LRK53_RS02485 0.43 -0.3 571,234 - LRK53_RS02490 0.49 -0.5 571,333 + +1.1 571,333 + +0.1 571,333 + -2.4 571,333 + -1.7 571,333 + +0.1 571,333 + -1.2 571,334 - -0.9 571,334 - -0.8 571,334 - +0.1 571,334 - -1.4 571,334 - -1.9 571,334 - +1.1 571,334 - -0.2 571,334 - -0.7 571,342 + -1.7 571,342 + -2.1 571,342 + +1.7 571,342 + -1.5 571,342 + +0.1 571,342 + -0.9 571,342 + +1.1 571,342 + -1.2 571,342 + -0.7 571,342 + -1.5 571,342 + -0.5 571,342 + -1.0 571,342 + +0.1 571,342 + -0.5 571,342 + -0.9 571,342 + -0.5 571,342 + -1.0 571,342 + +1.1 571,342 + -0.9 571,343 - -2.2 571,343 - +0.1 571,343 - -0.5 571,343 - -1.2 571,343 - -1.1 571,343 - -1.5 571,343 - +0.1 571,343 - -3.1 571,343 - -0.5 571,343 - -0.5 571,343 - +0.1 571,343 - -0.9 571,343 - -2.2 571,343 - -0.6 571,343 - +0.5 571,343 - +0.1 571,356 + +1.5 571,357 - +0.7 571,357 - -1.8 571,357 - +1.1 571,414 + -0.1 571,415 - -2.7 571,415 - -1.5 571,647 + LRK53_RS02495 0.40 -1.3 571,647 + LRK53_RS02495 0.40 -0.5 571,647 + LRK53_RS02495 0.40 -0.1 571,667 + LRK53_RS02495 0.43 -1.5 571,864 + LRK53_RS02495 0.69 -1.7 571,864 + LRK53_RS02495 0.69 -1.7 571,864 + LRK53_RS02495 0.69 +0.5 571,864 + LRK53_RS02495 0.69 -0.2 571,864 + LRK53_RS02495 0.69 -1.0 571,864 + LRK53_RS02495 0.69 -1.5 571,864 + LRK53_RS02495 0.69 +0.1 571,864 + LRK53_RS02495 0.69 +0.5 571,865 - LRK53_RS02495 0.69 -0.9 571,865 - LRK53_RS02495 0.69 +0.5 571,865 - LRK53_RS02495 0.69 -1.7 571,865 - LRK53_RS02495 0.69 +1.1 571,865 - LRK53_RS02495 0.69 +0.4 571,865 - LRK53_RS02495 0.69 -0.3 571,865 - LRK53_RS02495 0.69 +1.1 571,865 - LRK53_RS02495 0.69 -0.9 572,019 + LRK53_RS02495 0.89 +1.1 572,019 + LRK53_RS02495 0.89 -0.9 572,019 + LRK53_RS02495 0.89 +1.1 572,019 + LRK53_RS02495 0.89 -1.5 572,019 + LRK53_RS02495 0.89 -1.6 572,019 + LRK53_RS02495 0.89 +0.4 572,020 - LRK53_RS02495 0.89 -0.2 572,020 - LRK53_RS02495 0.89 +1.5 572,020 - LRK53_RS02495 0.89 +0.1 572,020 - LRK53_RS02495 0.89 -0.1 572,020 - LRK53_RS02495 0.89 -0.5 572,020 - LRK53_RS02495 0.89 -0.8 572,020 - LRK53_RS02495 0.89 -0.5 572,020 - LRK53_RS02495 0.89 -1.8 572,020 - LRK53_RS02495 0.89 -1.5 572,020 - LRK53_RS02495 0.89 -0.1 572,020 - LRK53_RS02495 0.89 -0.9 572,020 - LRK53_RS02495 0.89 -0.5 572,086 + -0.9 572,086 + -0.5 572,086 + -0.5 572,087 - +0.5 572,087 - +1.1 572,087 - -0.9 572,087 - -1.0 572,087 - -1.2
Or see this region's nucleotide sequence