Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00560 and LRK53_RS00565 are separated by 43 nucleotides LRK53_RS00565 and LRK53_RS00570 are separated by 281 nucleotides
LRK53_RS00560: LRK53_RS00560 - ABC transporter ATP-binding protein/permease, at 123,524 to 125,290
_RS00560
LRK53_RS00565: LRK53_RS00565 - ATP-binding protein, at 125,334 to 126,344
_RS00565
LRK53_RS00570: LRK53_RS00570 - nitrogen regulation protein NR(I), at 126,626 to 128,005
_RS00570
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 124.436 kb on + strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.437 kb on - strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.508 kb on + strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.509 kb on - strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.529 kb on + strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.530 kb on - strand, within LRK53_RS00560 at 124.803 kb on - strand, within LRK53_RS00560 at 124.803 kb on - strand, within LRK53_RS00560 at 125.180 kb on + strand at 125.964 kb on + strand, within LRK53_RS00565 at 125.964 kb on + strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 125.965 kb on - strand, within LRK53_RS00565 at 126.315 kb on + strand at 126.315 kb on + strand at 126.315 kb on + strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.316 kb on - strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.512 kb on + strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.516 kb on + strand at 126.517 kb on - strand at 126.517 kb on - strand at 126.517 kb on - strand at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.869 kb on + strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.870 kb on - strand, within LRK53_RS00570 at 126.900 kb on - strand, within LRK53_RS00570 at 126.920 kb on + strand, within LRK53_RS00570 at 126.920 kb on + strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570 at 126.921 kb on - strand, within LRK53_RS00570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM remove 124,436 + LRK53_RS00560 0.52 +0.1 124,437 - LRK53_RS00560 0.52 +1.7 124,437 - LRK53_RS00560 0.52 -1.2 124,437 - LRK53_RS00560 0.52 -1.2 124,437 - LRK53_RS00560 0.52 -1.7 124,437 - LRK53_RS00560 0.52 -1.7 124,437 - LRK53_RS00560 0.52 -0.5 124,508 + LRK53_RS00560 0.56 +1.1 124,508 + LRK53_RS00560 0.56 -1.2 124,508 + LRK53_RS00560 0.56 -0.5 124,508 + LRK53_RS00560 0.56 -1.2 124,508 + LRK53_RS00560 0.56 +0.5 124,508 + LRK53_RS00560 0.56 -0.2 124,508 + LRK53_RS00560 0.56 -0.6 124,508 + LRK53_RS00560 0.56 -1.4 124,508 + LRK53_RS00560 0.56 -0.1 124,509 - LRK53_RS00560 0.56 +1.1 124,509 - LRK53_RS00560 0.56 +0.9 124,509 - LRK53_RS00560 0.56 +1.1 124,509 - LRK53_RS00560 0.56 +1.1 124,509 - LRK53_RS00560 0.56 -0.2 124,509 - LRK53_RS00560 0.56 -2.8 124,509 - LRK53_RS00560 0.56 -0.6 124,509 - LRK53_RS00560 0.56 -0.9 124,529 + LRK53_RS00560 0.57 +0.4 124,529 + LRK53_RS00560 0.57 +1.1 124,529 + LRK53_RS00560 0.57 -0.6 124,529 + LRK53_RS00560 0.57 +1.1 124,529 + LRK53_RS00560 0.57 +1.0 124,529 + LRK53_RS00560 0.57 -0.5 124,529 + LRK53_RS00560 0.57 -0.5 124,529 + LRK53_RS00560 0.57 -0.7 124,529 + LRK53_RS00560 0.57 -0.5 124,529 + LRK53_RS00560 0.57 -0.1 124,530 - LRK53_RS00560 0.57 +0.3 124,530 - LRK53_RS00560 0.57 +0.1 124,530 - LRK53_RS00560 0.57 -1.5 124,530 - LRK53_RS00560 0.57 -0.3 124,530 - LRK53_RS00560 0.57 +0.1 124,530 - LRK53_RS00560 0.57 -3.1 124,530 - LRK53_RS00560 0.57 -1.7 124,530 - LRK53_RS00560 0.57 -1.2 124,530 - LRK53_RS00560 0.57 -1.0 124,530 - LRK53_RS00560 0.57 +0.5 124,530 - LRK53_RS00560 0.57 -0.9 124,530 - LRK53_RS00560 0.57 +0.1 124,803 - LRK53_RS00560 0.72 -0.5 124,803 - LRK53_RS00560 0.72 -1.5 125,180 + +1.1 125,964 + LRK53_RS00565 0.62 +0.1 125,964 + LRK53_RS00565 0.62 +3.1 125,965 - LRK53_RS00565 0.62 +2.1 125,965 - LRK53_RS00565 0.62 +0.9 125,965 - LRK53_RS00565 0.62 -0.5 125,965 - LRK53_RS00565 0.62 -2.3 125,965 - LRK53_RS00565 0.62 -0.5 125,965 - LRK53_RS00565 0.62 +0.1 126,315 + -0.9 126,315 + -0.4 126,315 + -0.5 126,316 - +1.1 126,316 - -0.5 126,316 - +0.1 126,316 - +1.1 126,512 + -0.5 126,512 + -0.2 126,512 + -0.5 126,512 + -0.5 126,512 + +0.6 126,513 - -1.2 126,513 - +3.1 126,513 - +0.1 126,513 - +0.1 126,513 - -1.2 126,513 - -0.5 126,513 - -1.2 126,516 + -0.9 126,517 - +0.7 126,517 - -0.5 126,517 - -0.5 126,869 + LRK53_RS00570 0.18 +0.1 126,869 + LRK53_RS00570 0.18 -2.7 126,869 + LRK53_RS00570 0.18 -1.5 126,869 + LRK53_RS00570 0.18 +2.1 126,869 + LRK53_RS00570 0.18 -0.5 126,869 + LRK53_RS00570 0.18 -0.2 126,869 + LRK53_RS00570 0.18 -1.6 126,869 + LRK53_RS00570 0.18 +0.1 126,870 - LRK53_RS00570 0.18 +0.1 126,870 - LRK53_RS00570 0.18 +0.4 126,870 - LRK53_RS00570 0.18 +0.4 126,870 - LRK53_RS00570 0.18 +0.1 126,870 - LRK53_RS00570 0.18 +1.1 126,870 - LRK53_RS00570 0.18 -0.5 126,870 - LRK53_RS00570 0.18 -1.0 126,870 - LRK53_RS00570 0.18 +0.1 126,870 - LRK53_RS00570 0.18 +0.7 126,900 - LRK53_RS00570 0.20 -0.8 126,920 + LRK53_RS00570 0.21 -1.5 126,920 + LRK53_RS00570 0.21 -0.9 126,921 - LRK53_RS00570 0.21 +0.1 126,921 - LRK53_RS00570 0.21 -0.5 126,921 - LRK53_RS00570 0.21 -1.0
Or see this region's nucleotide sequence