Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16380

Experiment: WM_RB68

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_RB68
3,085,593	+				+0.6
3,085,594	-				+0.9
3,085,618	-				-0.3
3,085,639	+				-1.3
3,085,694	+	ompR	JDDGAC_16375	0.14	+0.1
3,085,695	-	ompR	JDDGAC_16375	0.15	+0.6
3,085,824	-	ompR	JDDGAC_16375	0.33	+0.6
3,085,998	+	ompR	JDDGAC_16375	0.57	+0.2
3,085,998	+	ompR	JDDGAC_16375	0.57	-0.5
3,086,260	+				+1.7
3,086,327	+				-1.6
3,086,374	-				-0.3
3,086,416	-				+0.1
3,086,419	-				-2.8
3,086,568	+				-0.9
3,086,569	-				+0.8
3,086,588	-				+0.4
3,086,595	+				+1.5
3,086,811	+	yjcS	JDDGAC_16380	0.11	-1.2
3,086,833	-	yjcS	JDDGAC_16380	0.12	-1.6
3,086,959	-	yjcS	JDDGAC_16380	0.19	-0.1
3,086,966	-	yjcS	JDDGAC_16380	0.19	+1.5
3,086,997	+	yjcS	JDDGAC_16380	0.20	+0.6
3,086,997	+	yjcS	JDDGAC_16380	0.20	+0.6
3,086,997	+	yjcS	JDDGAC_16380	0.20	+0.8
3,086,998	-	yjcS	JDDGAC_16380	0.21	+1.8
3,086,998	-	yjcS	JDDGAC_16380	0.21	-0.2
3,086,998	-	yjcS	JDDGAC_16380	0.21	-0.1
3,087,024	+	yjcS	JDDGAC_16380	0.22	-2.0
3,087,118	-	yjcS	JDDGAC_16380	0.27	-0.5
3,087,121	+	yjcS	JDDGAC_16380	0.27	+0.4
3,087,165	+	yjcS	JDDGAC_16380	0.29	+0.5
3,087,165	+	yjcS	JDDGAC_16380	0.29	-0.2
3,087,165	+	yjcS	JDDGAC_16380	0.29	+0.1
3,087,165	+	yjcS	JDDGAC_16380	0.29	+0.1
3,087,166	-	yjcS	JDDGAC_16380	0.29	-0.7
3,087,183	+	yjcS	JDDGAC_16380	0.30	+0.7
3,087,183	+	yjcS	JDDGAC_16380	0.30	-0.3
3,087,184	-	yjcS	JDDGAC_16380	0.30	-0.4
3,087,284	-	yjcS	JDDGAC_16380	0.35	+0.5
3,087,284	-	yjcS	JDDGAC_16380	0.35	-0.6
3,087,289	+	yjcS	JDDGAC_16380	0.35	-0.2
3,087,373	-	yjcS	JDDGAC_16380	0.39	-0.3
3,087,373	-	yjcS	JDDGAC_16380	0.39	-0.4
3,087,390	+	yjcS	JDDGAC_16380	0.40	-0.5
3,087,391	-	yjcS	JDDGAC_16380	0.40	-1.3
3,087,485	-	yjcS	JDDGAC_16380	0.45	+1.2
3,087,486	+	yjcS	JDDGAC_16380	0.45	-0.7
3,087,486	+	yjcS	JDDGAC_16380	0.45	-0.2
3,087,531	+	yjcS	JDDGAC_16380	0.47	-2.6
3,087,531	+	yjcS	JDDGAC_16380	0.47	+1.3
3,087,547	+	yjcS	JDDGAC_16380	0.48	-1.0
3,087,547	+	yjcS	JDDGAC_16380	0.48	-0.4
3,087,548	-	yjcS	JDDGAC_16380	0.48	-0.8
3,087,616	-	yjcS	JDDGAC_16380	0.52	-1.4
3,087,645	+	yjcS	JDDGAC_16380	0.53	+0.3
3,087,675	+	yjcS	JDDGAC_16380	0.55	-0.7
3,087,676	-	yjcS	JDDGAC_16380	0.55	-1.3
3,087,789	+	yjcS	JDDGAC_16380	0.60	+1.0
3,087,813	+	yjcS	JDDGAC_16380	0.62	-1.2
3,087,869	-	yjcS	JDDGAC_16380	0.64	-1.7
3,087,870	+	yjcS	JDDGAC_16380	0.64	-2.3
3,087,871	-	yjcS	JDDGAC_16380	0.65	+1.7
3,087,877	+	yjcS	JDDGAC_16380	0.65	-1.9
3,087,877	+	yjcS	JDDGAC_16380	0.65	-0.6
3,087,878	-	yjcS	JDDGAC_16380	0.65	-1.6
3,087,919	+	yjcS	JDDGAC_16380	0.67	-0.6
3,087,920	-	yjcS	JDDGAC_16380	0.67	-1.4
3,087,929	+	yjcS	JDDGAC_16380	0.67	-1.1
3,087,930	-	yjcS	JDDGAC_16380	0.67	+1.5
3,087,930	-	yjcS	JDDGAC_16380	0.67	-0.8
3,088,035	-	yjcS	JDDGAC_16380	0.73	-0.1
3,088,185	+	yjcS	JDDGAC_16380	0.80	+0.2
3,088,186	-	yjcS	JDDGAC_16380	0.80	+0.3
3,088,186	-	yjcS	JDDGAC_16380	0.80	+0.2
3,088,257	+	yjcS	JDDGAC_16380	0.84	-0.5
3,088,299	+	yjcS	JDDGAC_16380	0.86	-1.2
3,088,317	+	yjcS	JDDGAC_16380	0.87	-0.2
3,088,318	-	yjcS	JDDGAC_16380	0.87	+0.1
3,088,366	-	yjcS	JDDGAC_16380	0.89	+0.2
3,088,366	-	yjcS	JDDGAC_16380	0.89	-0.2
3,088,369	+	yjcS	JDDGAC_16380	0.90	+1.0
3,088,369	+	yjcS	JDDGAC_16380	0.90	-2.3
3,088,375	-	yjcS	JDDGAC_16380	0.90	-1.6
3,088,408	+				+0.7
3,088,409	-				+0.2
3,088,780	+				-2.1
3,088,784	-				-2.9
3,089,006	+	ytcA	JDDGAC_16385	0.80	+0.6
3,089,128	-				-0.4
3,089,176	-				+0.5
3,089,194	+	mdtN	JDDGAC_16390	0.11	+0.3
3,089,195	-	mdtN	JDDGAC_16390	0.11	-0.4
3,089,204	+	mdtN	JDDGAC_16390	0.12	-0.3
3,089,205	-	mdtN	JDDGAC_16390	0.12	+1.3
3,089,218	+	mdtN	JDDGAC_16390	0.14	+0.5
3,089,219	-	mdtN	JDDGAC_16390	0.14	-0.2
3,089,256	+	mdtN	JDDGAC_16390	0.17	-0.0
3,089,256	+	mdtN	JDDGAC_16390	0.17	+1.0
3,089,257	-	mdtN	JDDGAC_16390	0.17	-1.0
3,089,257	-	mdtN	JDDGAC_16390	0.17	+0.6
3,089,383	+	mdtN	JDDGAC_16390	0.30	-0.6
3,089,383	+	mdtN	JDDGAC_16390	0.30	+0.4
3,089,383	+	mdtN	JDDGAC_16390	0.30	-1.7
3,089,398	+	mdtN	JDDGAC_16390	0.31	-0.5
3,089,467	+	mdtN	JDDGAC_16390	0.38	-2.1
3,089,482	+	mdtN	JDDGAC_16390	0.39	+0.0
3,089,482	+	mdtN	JDDGAC_16390	0.39	-0.6
3,089,487	+	mdtN	JDDGAC_16390	0.40	-0.2
3,089,487	+	mdtN	JDDGAC_16390	0.40	+0.1
3,089,487	+	mdtN	JDDGAC_16390	0.40	+0.4