Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_09230 and JDDGAC_09235 are separated by 3 nucleotides JDDGAC_09235 and JDDGAC_09240 overlap by 1 nucleotides JDDGAC_09240 and JDDGAC_09245 are separated by 99 nucleotides JDDGAC_09245 and JDDGAC_09250 are separated by 3 nucleotides
JDDGAC_09230: JDDGAC_09230 - Holin, at 1,628,204 to 1,628,485
_09230
JDDGAC_09235: JDDGAC_09235 - Baseplate protein X, at 1,628,489 to 1,628,692
_09235
JDDGAC_09240: JDDGAC_09240 - Head completion/stabilization protein, at 1,628,692 to 1,629,201
_09240
JDDGAC_09245: JDDGAC_09245 - Terminase, endonuclease subunit, at 1,629,301 to 1,630,044
_09245
JDDGAC_09250: JDDGAC_09250 - phage major capsid protein, P2 family, at 1,630,048 to 1,631,121
_09250
Position (kb)
1629
1630
1631 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 1628.491 kb on - strand at 1628.940 kb on + strand, within JDDGAC_09240 at 1628.976 kb on - strand, within JDDGAC_09240 at 1629.057 kb on + strand, within JDDGAC_09240 at 1629.058 kb on - strand, within JDDGAC_09240 at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.358 kb on - strand at 1629.716 kb on + strand, within JDDGAC_09245 at 1629.717 kb on - strand, within JDDGAC_09245 at 1629.886 kb on - strand, within JDDGAC_09245 at 1629.900 kb on - strand, within JDDGAC_09245 at 1629.953 kb on + strand, within JDDGAC_09245 at 1629.953 kb on + strand, within JDDGAC_09245 at 1629.954 kb on - strand, within JDDGAC_09245 at 1630.131 kb on - strand at 1630.146 kb on - strand at 1630.167 kb on - strand, within JDDGAC_09250 at 1630.229 kb on + strand, within JDDGAC_09250 at 1630.230 kb on - strand, within JDDGAC_09250 at 1630.230 kb on - strand, within JDDGAC_09250 at 1630.233 kb on - strand, within JDDGAC_09250 at 1630.333 kb on - strand, within JDDGAC_09250 at 1630.402 kb on + strand, within JDDGAC_09250 at 1630.503 kb on - strand, within JDDGAC_09250 at 1630.781 kb on + strand, within JDDGAC_09250 at 1630.803 kb on + strand, within JDDGAC_09250 at 1630.820 kb on + strand, within JDDGAC_09250
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,628,491 - +3.0 1,628,940 + JDDGAC_09240 0.49 +4.5 1,628,976 - JDDGAC_09240 0.56 +3.3 1,629,057 + JDDGAC_09240 0.72 +4.3 1,629,058 - JDDGAC_09240 0.72 +3.9 1,629,206 - +4.8 1,629,206 - +3.4 1,629,206 - +2.8 1,629,206 - +4.2 1,629,358 - +3.3 1,629,716 + JDDGAC_09245 0.56 +3.8 1,629,717 - JDDGAC_09245 0.56 +4.3 1,629,886 - JDDGAC_09245 0.79 +4.5 1,629,900 - JDDGAC_09245 0.81 +4.6 1,629,953 + JDDGAC_09245 0.88 +5.8 1,629,953 + JDDGAC_09245 0.88 +4.0 1,629,954 - JDDGAC_09245 0.88 +4.0 1,630,131 - +3.3 1,630,146 - +3.5 1,630,167 - JDDGAC_09250 0.11 +1.7 1,630,229 + JDDGAC_09250 0.17 +4.5 1,630,230 - JDDGAC_09250 0.17 +2.5 1,630,230 - JDDGAC_09250 0.17 +2.8 1,630,233 - JDDGAC_09250 0.17 +3.6 1,630,333 - JDDGAC_09250 0.27 +4.0 1,630,402 + JDDGAC_09250 0.33 +3.6 1,630,503 - JDDGAC_09250 0.42 +3.1 1,630,781 + JDDGAC_09250 0.68 +4.0 1,630,803 + JDDGAC_09250 0.70 +3.9 1,630,820 + JDDGAC_09250 0.72 +3.9
Or see this region's nucleotide sequence