Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_06395

Experiment: G2M5_D4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_06390 and HUW76_06395 are separated by 21 nucleotidesHUW76_06395 and HUW76_06400 are separated by 205 nucleotides HUW76_06390: HUW76_06390 - ATP-binding protein, at 1,315,760 to 1,317,583 _06390 HUW76_06395: HUW76_06395 - hypothetical protein, at 1,317,605 to 1,318,513 _06395 HUW76_06400: HUW76_06400 - PASTA domain-containing protein, at 1,318,719 to 1,319,318 _06400 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1316.625 kb on + strand, within HUW76_06390at 1316.633 kb on - strand, within HUW76_06390at 1316.716 kb on - strand, within HUW76_06390at 1316.872 kb on - strand, within HUW76_06390at 1316.872 kb on - strand, within HUW76_06390at 1316.872 kb on - strand, within HUW76_06390at 1316.872 kb on - strand, within HUW76_06390at 1316.878 kb on - strand, within HUW76_06390at 1316.878 kb on - strand, within HUW76_06390at 1316.885 kb on + strand, within HUW76_06390at 1316.885 kb on + strand, within HUW76_06390at 1316.905 kb on + strand, within HUW76_06390at 1316.922 kb on - strand, within HUW76_06390at 1316.993 kb on - strand, within HUW76_06390at 1316.993 kb on - strand, within HUW76_06390at 1317.113 kb on - strand, within HUW76_06390at 1317.208 kb on - strand, within HUW76_06390at 1317.216 kb on + strand, within HUW76_06390at 1317.271 kb on + strand, within HUW76_06390at 1317.271 kb on + strand, within HUW76_06390at 1317.287 kb on + strand, within HUW76_06390at 1317.287 kb on + strand, within HUW76_06390at 1317.294 kb on + strand, within HUW76_06390at 1317.328 kb on + strand, within HUW76_06390at 1317.402 kb on - strandat 1317.402 kb on - strandat 1317.502 kb on - strandat 1317.502 kb on - strandat 1317.590 kb on + strandat 1317.590 kb on + strandat 1317.730 kb on + strand, within HUW76_06395at 1317.730 kb on - strand, within HUW76_06395at 1317.730 kb on - strand, within HUW76_06395at 1317.738 kb on - strand, within HUW76_06395at 1317.738 kb on - strand, within HUW76_06395at 1317.749 kb on + strand, within HUW76_06395at 1317.749 kb on + strand, within HUW76_06395at 1317.766 kb on + strand, within HUW76_06395at 1317.791 kb on + strand, within HUW76_06395at 1317.841 kb on + strand, within HUW76_06395at 1317.841 kb on + strand, within HUW76_06395at 1317.844 kb on - strand, within HUW76_06395at 1317.844 kb on - strand, within HUW76_06395at 1317.904 kb on + strand, within HUW76_06395at 1317.904 kb on + strand, within HUW76_06395at 1317.960 kb on + strand, within HUW76_06395at 1317.960 kb on + strand, within HUW76_06395at 1317.960 kb on + strand, within HUW76_06395at 1317.960 kb on + strand, within HUW76_06395at 1317.961 kb on - strand, within HUW76_06395at 1317.963 kb on - strand, within HUW76_06395at 1317.968 kb on - strand, within HUW76_06395at 1318.032 kb on + strand, within HUW76_06395at 1318.032 kb on + strand, within HUW76_06395at 1318.032 kb on + strand, within HUW76_06395at 1318.032 kb on + strand, within HUW76_06395at 1318.040 kb on - strand, within HUW76_06395at 1318.097 kb on + strand, within HUW76_06395at 1318.103 kb on + strand, within HUW76_06395at 1318.145 kb on + strand, within HUW76_06395at 1318.154 kb on + strand, within HUW76_06395at 1318.220 kb on - strand, within HUW76_06395at 1318.242 kb on + strand, within HUW76_06395at 1318.244 kb on + strand, within HUW76_06395at 1318.244 kb on + strand, within HUW76_06395at 1318.411 kb on + strand, within HUW76_06395at 1318.411 kb on + strand, within HUW76_06395at 1318.411 kb on + strand, within HUW76_06395at 1318.411 kb on + strand, within HUW76_06395at 1318.419 kb on - strand, within HUW76_06395at 1318.419 kb on - strand, within HUW76_06395at 1318.419 kb on - strand, within HUW76_06395at 1318.421 kb on + strand, within HUW76_06395at 1318.440 kb on + strandat 1318.440 kb on + strandat 1318.449 kb on + strandat 1318.622 kb on + strandat 1318.700 kb on + strandat 1319.302 kb on + strandat 1319.431 kb on + strandat 1319.431 kb on + strandat 1319.449 kb on + strandat 1319.449 kb on + strandat 1319.459 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
remove
1,316,625 + HUW76_06390 0.47 +3.8
1,316,633 - HUW76_06390 0.48 -1.6
1,316,716 - HUW76_06390 0.52 +1.4
1,316,872 - HUW76_06390 0.61 +1.0
1,316,872 - HUW76_06390 0.61 +2.0
1,316,872 - HUW76_06390 0.61 +0.5
1,316,872 - HUW76_06390 0.61 -1.1
1,316,878 - HUW76_06390 0.61 +2.0
1,316,878 - HUW76_06390 0.61 +2.6
1,316,885 + HUW76_06390 0.62 +3.1
1,316,885 + HUW76_06390 0.62 +2.5
1,316,905 + HUW76_06390 0.63 +3.7
1,316,922 - HUW76_06390 0.64 -0.0
1,316,993 - HUW76_06390 0.68 -1.5
1,316,993 - HUW76_06390 0.68 -0.6
1,317,113 - HUW76_06390 0.74 -0.2
1,317,208 - HUW76_06390 0.79 -1.4
1,317,216 + HUW76_06390 0.80 +4.0
1,317,271 + HUW76_06390 0.83 +3.8
1,317,271 + HUW76_06390 0.83 +5.0
1,317,287 + HUW76_06390 0.84 +3.8
1,317,287 + HUW76_06390 0.84 +3.4
1,317,294 + HUW76_06390 0.84 +3.8
1,317,328 + HUW76_06390 0.86 +3.6
1,317,402 - +0.1
1,317,402 - -1.2
1,317,502 - +0.1
1,317,502 - -0.6
1,317,590 + +4.4
1,317,590 + +4.2
1,317,730 + HUW76_06395 0.14 +4.8
1,317,730 - HUW76_06395 0.14 -0.6
1,317,730 - HUW76_06395 0.14 +1.1
1,317,738 - HUW76_06395 0.15 +0.5
1,317,738 - HUW76_06395 0.15 +0.1
1,317,749 + HUW76_06395 0.16 +3.8
1,317,749 + HUW76_06395 0.16 +4.0
1,317,766 + HUW76_06395 0.18 +4.3
1,317,791 + HUW76_06395 0.20 +4.3
1,317,841 + HUW76_06395 0.26 +4.7
1,317,841 + HUW76_06395 0.26 +4.8
1,317,844 - HUW76_06395 0.26 +0.7
1,317,844 - HUW76_06395 0.26 -0.3
1,317,904 + HUW76_06395 0.33 +4.9
1,317,904 + HUW76_06395 0.33 +4.2
1,317,960 + HUW76_06395 0.39 +4.6
1,317,960 + HUW76_06395 0.39 +5.7
1,317,960 + HUW76_06395 0.39 +4.8
1,317,960 + HUW76_06395 0.39 +4.5
1,317,961 - HUW76_06395 0.39 +1.9
1,317,963 - HUW76_06395 0.39 -1.4
1,317,968 - HUW76_06395 0.40 +0.8
1,318,032 + HUW76_06395 0.47 +3.5
1,318,032 + HUW76_06395 0.47 +4.5
1,318,032 + HUW76_06395 0.47 +4.1
1,318,032 + HUW76_06395 0.47 +4.3
1,318,040 - HUW76_06395 0.48 +2.3
1,318,097 + HUW76_06395 0.54 +5.0
1,318,103 + HUW76_06395 0.55 +3.7
1,318,145 + HUW76_06395 0.59 +5.1
1,318,154 + HUW76_06395 0.60 +5.0
1,318,220 - HUW76_06395 0.68 -1.0
1,318,242 + HUW76_06395 0.70 +5.0
1,318,244 + HUW76_06395 0.70 +4.4
1,318,244 + HUW76_06395 0.70 +4.4
1,318,411 + HUW76_06395 0.89 +4.8
1,318,411 + HUW76_06395 0.89 +4.9
1,318,411 + HUW76_06395 0.89 +4.9
1,318,411 + HUW76_06395 0.89 +5.1
1,318,419 - HUW76_06395 0.90 +0.1
1,318,419 - HUW76_06395 0.90 +0.8
1,318,419 - HUW76_06395 0.90 +0.9
1,318,421 + HUW76_06395 0.90 +5.0
1,318,440 + +5.1
1,318,440 + +4.9
1,318,449 + +5.2
1,318,622 + +4.4
1,318,700 + +3.9
1,319,302 + +4.7
1,319,431 + +4.2
1,319,431 + +4.5
1,319,449 + +4.8
1,319,449 + +4.8
1,319,459 + +5.1

Or see this region's nucleotide sequence