Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04550

Experiment: G2M5_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04540 and HUW76_04545 are separated by 21 nucleotidesHUW76_04545 and HUW76_04550 are separated by 8 nucleotidesHUW76_04550 and HUW76_04555 are separated by 75 nucleotides HUW76_04540: HUW76_04540 - cyclodeaminase/cyclohydrolase family protein, at 913,641 to 914,279 _04540 HUW76_04545: HUW76_04545 - NADAR family protein, at 914,301 to 914,849 _04545 HUW76_04550: HUW76_04550 - imidazolonepropionase, at 914,858 to 916,099 _04550 HUW76_04555: HUW76_04555 - glutamate formimidoyltransferase, at 916,175 to 917,140 _04555 Position (kb) 914 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 914.376 kb on - strand, within HUW76_04545at 914.376 kb on - strand, within HUW76_04545at 914.376 kb on - strand, within HUW76_04545at 914.649 kb on + strand, within HUW76_04545at 914.668 kb on + strand, within HUW76_04545at 914.676 kb on - strand, within HUW76_04545at 914.676 kb on - strand, within HUW76_04545at 914.676 kb on - strand, within HUW76_04545at 914.676 kb on - strand, within HUW76_04545at 914.676 kb on - strand, within HUW76_04545at 914.683 kb on + strand, within HUW76_04545at 914.686 kb on + strand, within HUW76_04545at 914.686 kb on + strand, within HUW76_04545at 914.686 kb on - strand, within HUW76_04545at 914.759 kb on - strand, within HUW76_04545at 914.909 kb on - strandat 914.980 kb on - strandat 915.000 kb on - strand, within HUW76_04550at 915.025 kb on + strand, within HUW76_04550at 915.025 kb on + strand, within HUW76_04550at 915.057 kb on - strand, within HUW76_04550at 915.078 kb on + strand, within HUW76_04550at 915.078 kb on + strand, within HUW76_04550at 915.134 kb on - strand, within HUW76_04550at 915.134 kb on - strand, within HUW76_04550at 915.183 kb on + strand, within HUW76_04550at 915.183 kb on + strand, within HUW76_04550at 915.196 kb on + strand, within HUW76_04550at 915.199 kb on - strand, within HUW76_04550at 915.199 kb on - strand, within HUW76_04550at 915.246 kb on - strand, within HUW76_04550at 915.246 kb on - strand, within HUW76_04550at 915.253 kb on - strand, within HUW76_04550at 915.253 kb on - strand, within HUW76_04550at 915.300 kb on - strand, within HUW76_04550at 915.330 kb on - strand, within HUW76_04550at 915.388 kb on - strand, within HUW76_04550at 915.514 kb on - strand, within HUW76_04550at 915.583 kb on - strand, within HUW76_04550at 915.593 kb on + strand, within HUW76_04550at 915.618 kb on - strand, within HUW76_04550at 915.694 kb on + strand, within HUW76_04550at 915.702 kb on - strand, within HUW76_04550at 915.702 kb on - strand, within HUW76_04550at 915.752 kb on + strand, within HUW76_04550at 915.759 kb on - strand, within HUW76_04550at 915.759 kb on - strand, within HUW76_04550at 915.779 kb on - strand, within HUW76_04550at 915.843 kb on - strand, within HUW76_04550at 915.851 kb on + strand, within HUW76_04550at 915.853 kb on - strand, within HUW76_04550at 915.853 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.885 kb on - strand, within HUW76_04550at 915.890 kb on - strand, within HUW76_04550at 916.012 kb on + strandat 916.012 kb on + strandat 916.020 kb on - strandat 916.020 kb on - strandat 916.056 kb on - strandat 916.107 kb on + strandat 916.107 kb on + strandat 916.107 kb on + strandat 916.107 kb on + strandat 916.111 kb on - strandat 916.111 kb on - strandat 916.123 kb on + strandat 916.123 kb on + strandat 916.123 kb on + strandat 916.132 kb on - strandat 916.173 kb on + strandat 916.173 kb on + strandat 916.222 kb on - strandat 916.366 kb on + strand, within HUW76_04555at 916.380 kb on - strand, within HUW76_04555at 916.488 kb on + strand, within HUW76_04555at 916.526 kb on + strand, within HUW76_04555at 916.556 kb on + strand, within HUW76_04555at 916.556 kb on + strand, within HUW76_04555at 916.569 kb on + strand, within HUW76_04555at 916.600 kb on + strand, within HUW76_04555at 916.610 kb on + strand, within HUW76_04555at 916.612 kb on + strand, within HUW76_04555at 916.620 kb on - strand, within HUW76_04555at 916.624 kb on + strand, within HUW76_04555at 916.624 kb on + strand, within HUW76_04555at 916.629 kb on + strand, within HUW76_04555at 916.637 kb on - strand, within HUW76_04555at 916.642 kb on - strand, within HUW76_04555at 916.644 kb on - strand, within HUW76_04555at 916.675 kb on - strand, within HUW76_04555at 916.703 kb on + strand, within HUW76_04555at 916.703 kb on + strand, within HUW76_04555at 916.706 kb on - strand, within HUW76_04555at 916.706 kb on - strand, within HUW76_04555at 916.726 kb on + strand, within HUW76_04555at 916.733 kb on - strand, within HUW76_04555at 916.733 kb on - strand, within HUW76_04555at 916.733 kb on - strand, within HUW76_04555at 916.739 kb on + strand, within HUW76_04555at 916.742 kb on - strand, within HUW76_04555at 916.742 kb on - strand, within HUW76_04555at 916.747 kb on - strand, within HUW76_04555at 916.747 kb on - strand, within HUW76_04555at 916.800 kb on + strand, within HUW76_04555at 916.818 kb on - strand, within HUW76_04555at 916.834 kb on + strand, within HUW76_04555at 916.836 kb on + strand, within HUW76_04555at 916.836 kb on + strand, within HUW76_04555at 916.840 kb on - strand, within HUW76_04555at 916.840 kb on - strand, within HUW76_04555at 916.842 kb on - strand, within HUW76_04555at 916.842 kb on - strand, within HUW76_04555at 916.875 kb on - strand, within HUW76_04555at 916.876 kb on + strand, within HUW76_04555at 916.895 kb on + strand, within HUW76_04555at 916.895 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.982 kb on + strand, within HUW76_04555at 916.990 kb on + strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.990 kb on - strand, within HUW76_04555at 916.996 kb on + strand, within HUW76_04555at 917.006 kb on + strand, within HUW76_04555at 917.006 kb on + strand, within HUW76_04555at 917.014 kb on - strand, within HUW76_04555at 917.014 kb on - strand, within HUW76_04555at 917.065 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.093 kb on + strandat 917.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
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914,376 - HUW76_04545 0.14 -0.1
914,376 - HUW76_04545 0.14 -1.2
914,376 - HUW76_04545 0.14 -0.2
914,649 + HUW76_04545 0.63 +0.9
914,668 + HUW76_04545 0.67 -1.3
914,676 - HUW76_04545 0.68 -2.1
914,676 - HUW76_04545 0.68 +1.4
914,676 - HUW76_04545 0.68 -1.8
914,676 - HUW76_04545 0.68 +0.2
914,676 - HUW76_04545 0.68 +0.4
914,683 + HUW76_04545 0.70 -1.2
914,686 + HUW76_04545 0.70 -1.5
914,686 + HUW76_04545 0.70 -0.7
914,686 - HUW76_04545 0.70 +0.7
914,759 - HUW76_04545 0.83 +0.9
914,909 - +1.3
914,980 - -0.4
915,000 - HUW76_04550 0.11 +0.1
915,025 + HUW76_04550 0.13 +1.2
915,025 + HUW76_04550 0.13 +0.4
915,057 - HUW76_04550 0.16 +0.5
915,078 + HUW76_04550 0.18 +1.4
915,078 + HUW76_04550 0.18 +2.3
915,134 - HUW76_04550 0.22 -1.6
915,134 - HUW76_04550 0.22 +0.9
915,183 + HUW76_04550 0.26 +0.4
915,183 + HUW76_04550 0.26 -0.5
915,196 + HUW76_04550 0.27 +1.3
915,199 - HUW76_04550 0.27 +0.5
915,199 - HUW76_04550 0.27 +0.4
915,246 - HUW76_04550 0.31 -0.3
915,246 - HUW76_04550 0.31 +0.1
915,253 - HUW76_04550 0.32 -0.0
915,253 - HUW76_04550 0.32 +2.5
915,300 - HUW76_04550 0.36 +0.9
915,330 - HUW76_04550 0.38 +1.9
915,388 - HUW76_04550 0.43 -1.5
915,514 - HUW76_04550 0.53 +1.5
915,583 - HUW76_04550 0.58 +0.1
915,593 + HUW76_04550 0.59 +2.0
915,618 - HUW76_04550 0.61 +0.6
915,694 + HUW76_04550 0.67 +1.0
915,702 - HUW76_04550 0.68 +1.9
915,702 - HUW76_04550 0.68 +1.8
915,752 + HUW76_04550 0.72 +0.6
915,759 - HUW76_04550 0.73 +1.0
915,759 - HUW76_04550 0.73 +0.9
915,779 - HUW76_04550 0.74 +1.4
915,843 - HUW76_04550 0.79 -0.1
915,851 + HUW76_04550 0.80 -0.6
915,853 - HUW76_04550 0.80 +0.1
915,853 - HUW76_04550 0.80 +1.8
915,885 - HUW76_04550 0.83 +1.2
915,885 - HUW76_04550 0.83 +0.2
915,885 - HUW76_04550 0.83 -0.5
915,885 - HUW76_04550 0.83 +0.1
915,885 - HUW76_04550 0.83 +0.8
915,885 - HUW76_04550 0.83 +1.5
915,885 - HUW76_04550 0.83 +1.9
915,890 - HUW76_04550 0.83 +2.0
916,012 + +1.9
916,012 + +0.6
916,020 - +2.0
916,020 - +0.6
916,056 - +0.6
916,107 + -1.8
916,107 + -1.6
916,107 + -0.7
916,107 + +0.1
916,111 - -2.3
916,111 - -1.4
916,123 + -0.9
916,123 + +2.5
916,123 + +1.5
916,132 - -0.0
916,173 + +0.3
916,173 + +2.3
916,222 - +2.0
916,366 + HUW76_04555 0.20 +2.2
916,380 - HUW76_04555 0.21 +2.2
916,488 + HUW76_04555 0.32 -0.7
916,526 + HUW76_04555 0.36 -0.6
916,556 + HUW76_04555 0.39 +0.8
916,556 + HUW76_04555 0.39 +1.3
916,569 + HUW76_04555 0.41 +0.1
916,600 + HUW76_04555 0.44 -0.0
916,610 + HUW76_04555 0.45 +0.4
916,612 + HUW76_04555 0.45 +0.3
916,620 - HUW76_04555 0.46 +2.5
916,624 + HUW76_04555 0.46 +1.1
916,624 + HUW76_04555 0.46 +0.1
916,629 + HUW76_04555 0.47 +0.3
916,637 - HUW76_04555 0.48 +2.9
916,642 - HUW76_04555 0.48 +3.4
916,644 - HUW76_04555 0.49 +2.8
916,675 - HUW76_04555 0.52 +2.7
916,703 + HUW76_04555 0.55 -0.0
916,703 + HUW76_04555 0.55 +1.3
916,706 - HUW76_04555 0.55 +2.7
916,706 - HUW76_04555 0.55 +2.0
916,726 + HUW76_04555 0.57 -0.2
916,733 - HUW76_04555 0.58 +3.8
916,733 - HUW76_04555 0.58 +2.9
916,733 - HUW76_04555 0.58 +0.8
916,739 + HUW76_04555 0.58 -0.0
916,742 - HUW76_04555 0.59 +2.9
916,742 - HUW76_04555 0.59 +3.1
916,747 - HUW76_04555 0.59 +3.0
916,747 - HUW76_04555 0.59 +2.3
916,800 + HUW76_04555 0.65 +1.2
916,818 - HUW76_04555 0.67 +2.5
916,834 + HUW76_04555 0.68 +2.3
916,836 + HUW76_04555 0.68 +2.5
916,836 + HUW76_04555 0.68 -0.1
916,840 - HUW76_04555 0.69 +2.8
916,840 - HUW76_04555 0.69 +2.8
916,842 - HUW76_04555 0.69 +2.5
916,842 - HUW76_04555 0.69 +2.0
916,875 - HUW76_04555 0.72 +3.1
916,876 + HUW76_04555 0.73 +1.6
916,895 + HUW76_04555 0.75 +1.8
916,895 + HUW76_04555 0.75 +0.6
916,982 + HUW76_04555 0.84 -0.5
916,982 + HUW76_04555 0.84 +0.7
916,982 + HUW76_04555 0.84 -0.5
916,982 + HUW76_04555 0.84 -0.4
916,982 + HUW76_04555 0.84 +0.5
916,982 + HUW76_04555 0.84 -0.6
916,982 + HUW76_04555 0.84 +1.5
916,982 + HUW76_04555 0.84 +0.0
916,982 + HUW76_04555 0.84 +1.6
916,982 + HUW76_04555 0.84 +1.0
916,990 + HUW76_04555 0.84 +2.3
916,990 - HUW76_04555 0.84 +2.2
916,990 - HUW76_04555 0.84 +1.2
916,990 - HUW76_04555 0.84 +2.8
916,990 - HUW76_04555 0.84 +2.4
916,990 - HUW76_04555 0.84 +3.0
916,990 - HUW76_04555 0.84 +2.2
916,990 - HUW76_04555 0.84 +3.4
916,990 - HUW76_04555 0.84 +3.4
916,990 - HUW76_04555 0.84 +3.4
916,990 - HUW76_04555 0.84 +1.7
916,990 - HUW76_04555 0.84 +2.8
916,990 - HUW76_04555 0.84 +2.9
916,990 - HUW76_04555 0.84 +1.1
916,990 - HUW76_04555 0.84 +2.5
916,996 + HUW76_04555 0.85 -0.2
917,006 + HUW76_04555 0.86 +0.4
917,006 + HUW76_04555 0.86 -0.4
917,014 - HUW76_04555 0.87 +2.7
917,014 - HUW76_04555 0.87 +3.2
917,065 + -0.7
917,093 + +0.1
917,093 + -1.4
917,093 + +0.6
917,093 + +0.4
917,095 + -1.4

Or see this region's nucleotide sequence