Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04470

Experiment: G2M5_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04460 and HUW76_04465 are separated by 48 nucleotidesHUW76_04465 and HUW76_04470 are separated by 209 nucleotidesHUW76_04470 and HUW76_04475 are separated by 13 nucleotidesHUW76_04475 and HUW76_04480 are separated by 120 nucleotides HUW76_04460: HUW76_04460 - elongation factor P, at 899,230 to 899,793 _04460 HUW76_04465: HUW76_04465 - hypothetical protein, at 899,842 to 900,231 _04465 HUW76_04470: HUW76_04470 - flavodoxin, at 900,441 to 900,944 _04470 HUW76_04475: HUW76_04475 - tRNA threonylcarbamoyladenosine dehydratase, at 900,958 to 901,662 _04475 HUW76_04480: HUW76_04480 - DUF4241 domain-containing protein, at 901,783 to 902,538 _04480 Position (kb) 900 901Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 899.809 kb on - strandat 899.881 kb on + strand, within HUW76_04465at 899.884 kb on + strand, within HUW76_04465at 899.926 kb on + strand, within HUW76_04465at 899.926 kb on + strand, within HUW76_04465at 899.934 kb on - strand, within HUW76_04465at 900.085 kb on - strand, within HUW76_04465at 900.136 kb on + strand, within HUW76_04465at 900.136 kb on + strand, within HUW76_04465at 900.368 kb on - strandat 900.586 kb on - strand, within HUW76_04470at 900.733 kb on - strand, within HUW76_04470at 900.755 kb on - strand, within HUW76_04470at 900.765 kb on - strand, within HUW76_04470at 900.765 kb on - strand, within HUW76_04470at 900.829 kb on - strand, within HUW76_04470at 900.829 kb on - strand, within HUW76_04470at 900.883 kb on - strand, within HUW76_04470at 901.030 kb on - strand, within HUW76_04475at 901.115 kb on - strand, within HUW76_04475at 901.170 kb on - strand, within HUW76_04475at 901.201 kb on - strand, within HUW76_04475at 901.201 kb on - strand, within HUW76_04475at 901.335 kb on - strand, within HUW76_04475at 901.423 kb on - strand, within HUW76_04475at 901.438 kb on - strand, within HUW76_04475at 901.438 kb on - strand, within HUW76_04475at 901.438 kb on - strand, within HUW76_04475at 901.438 kb on - strand, within HUW76_04475at 901.455 kb on - strand, within HUW76_04475at 901.455 kb on - strand, within HUW76_04475at 901.455 kb on - strand, within HUW76_04475at 901.474 kb on - strand, within HUW76_04475at 901.474 kb on - strand, within HUW76_04475at 901.565 kb on - strand, within HUW76_04475at 901.573 kb on - strand, within HUW76_04475at 901.649 kb on - strandat 901.755 kb on - strandat 901.816 kb on + strandat 901.816 kb on + strandat 901.885 kb on - strand, within HUW76_04480at 901.910 kb on - strand, within HUW76_04480

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Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
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899,809 - -0.5
899,881 + HUW76_04465 0.10 -0.7
899,884 + HUW76_04465 0.11 +0.8
899,926 + HUW76_04465 0.22 +1.4
899,926 + HUW76_04465 0.22 -1.1
899,934 - HUW76_04465 0.24 -0.2
900,085 - HUW76_04465 0.62 -0.0
900,136 + HUW76_04465 0.75 +0.1
900,136 + HUW76_04465 0.75 +1.4
900,368 - -1.9
900,586 - HUW76_04470 0.29 +0.5
900,733 - HUW76_04470 0.58 -0.3
900,755 - HUW76_04470 0.62 +2.5
900,765 - HUW76_04470 0.64 -0.8
900,765 - HUW76_04470 0.64 +0.7
900,829 - HUW76_04470 0.77 -0.8
900,829 - HUW76_04470 0.77 -0.9
900,883 - HUW76_04470 0.88 -1.1
901,030 - HUW76_04475 0.10 +4.3
901,115 - HUW76_04475 0.22 +0.8
901,170 - HUW76_04475 0.30 +0.4
901,201 - HUW76_04475 0.34 -0.0
901,201 - HUW76_04475 0.34 +0.7
901,335 - HUW76_04475 0.53 +2.1
901,423 - HUW76_04475 0.66 +1.3
901,438 - HUW76_04475 0.68 -0.6
901,438 - HUW76_04475 0.68 +1.5
901,438 - HUW76_04475 0.68 +2.0
901,438 - HUW76_04475 0.68 +0.1
901,455 - HUW76_04475 0.70 +0.3
901,455 - HUW76_04475 0.70 -1.0
901,455 - HUW76_04475 0.70 -0.1
901,474 - HUW76_04475 0.73 +0.7
901,474 - HUW76_04475 0.73 -0.7
901,565 - HUW76_04475 0.86 +2.0
901,573 - HUW76_04475 0.87 -0.2
901,649 - +1.1
901,755 - +0.3
901,816 + -1.4
901,816 + +0.7
901,885 - HUW76_04480 0.13 +0.8
901,910 - HUW76_04480 0.17 -0.1

Or see this region's nucleotide sequence