Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03995

Experiment: G2M5_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03980 and HUW76_03985 are separated by 69 nucleotidesHUW76_03985 and HUW76_03990 are separated by 66 nucleotidesHUW76_03990 and HUW76_03995 are separated by 124 nucleotidesHUW76_03995 and HUW76_04000 are separated by 59 nucleotides HUW76_03980: HUW76_03980 - HAD-IIA family hydrolase, at 801,639 to 802,433 _03980 HUW76_03985: HUW76_03985 - nitroreductase family protein, at 802,503 to 803,018 _03985 HUW76_03990: HUW76_03990 - hypothetical protein, at 803,085 to 803,288 _03990 HUW76_03995: HUW76_03995 - iron transporter, at 803,413 to 804,096 _03995 HUW76_04000: HUW76_04000 - FTR1 family iron permease, at 804,156 to 805,472 _04000 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 802.539 kb on - strandat 802.545 kb on - strandat 802.575 kb on - strand, within HUW76_03985at 802.812 kb on + strand, within HUW76_03985at 802.812 kb on + strand, within HUW76_03985at 802.838 kb on + strand, within HUW76_03985at 802.838 kb on + strand, within HUW76_03985at 802.861 kb on + strand, within HUW76_03985at 802.868 kb on - strand, within HUW76_03985at 802.868 kb on - strand, within HUW76_03985at 802.872 kb on - strand, within HUW76_03985at 802.872 kb on - strand, within HUW76_03985at 802.933 kb on + strand, within HUW76_03985at 802.933 kb on + strand, within HUW76_03985at 802.941 kb on - strand, within HUW76_03985at 802.941 kb on - strand, within HUW76_03985at 802.953 kb on + strand, within HUW76_03985at 803.059 kb on - strandat 803.059 kb on - strandat 803.133 kb on + strand, within HUW76_03990at 803.133 kb on + strand, within HUW76_03990at 803.163 kb on + strand, within HUW76_03990at 803.163 kb on + strand, within HUW76_03990at 803.235 kb on + strand, within HUW76_03990at 803.235 kb on + strand, within HUW76_03990at 803.247 kb on + strand, within HUW76_03990at 803.247 kb on + strand, within HUW76_03990at 803.254 kb on - strand, within HUW76_03990at 803.254 kb on - strand, within HUW76_03990at 803.438 kb on + strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.533 kb on + strand, within HUW76_03995at 803.533 kb on + strand, within HUW76_03995at 803.548 kb on + strand, within HUW76_03995at 803.548 kb on + strand, within HUW76_03995at 803.599 kb on + strand, within HUW76_03995at 803.661 kb on + strand, within HUW76_03995at 803.691 kb on + strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.719 kb on + strand, within HUW76_03995at 803.719 kb on + strand, within HUW76_03995at 803.774 kb on + strand, within HUW76_03995at 803.779 kb on - strand, within HUW76_03995at 803.822 kb on + strand, within HUW76_03995at 803.848 kb on + strand, within HUW76_03995at 803.851 kb on - strand, within HUW76_03995at 803.856 kb on - strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.873 kb on + strand, within HUW76_03995at 803.881 kb on - strand, within HUW76_03995at 803.881 kb on - strand, within HUW76_03995at 803.888 kb on + strand, within HUW76_03995at 803.896 kb on - strand, within HUW76_03995at 803.896 kb on - strand, within HUW76_03995at 803.970 kb on - strand, within HUW76_03995at 803.970 kb on - strand, within HUW76_03995at 803.991 kb on - strand, within HUW76_03995at 803.991 kb on - strand, within HUW76_03995at 804.049 kb on - strandat 804.052 kb on + strandat 804.053 kb on - strandat 804.053 kb on - strandat 804.053 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.221 kb on - strandat 804.230 kb on - strandat 804.242 kb on - strandat 804.242 kb on - strandat 804.257 kb on + strandat 804.265 kb on + strandat 804.265 kb on + strandat 804.541 kb on + strand, within HUW76_04000at 804.553 kb on + strand, within HUW76_04000at 804.569 kb on - strand, within HUW76_04000at 804.569 kb on - strand, within HUW76_04000at 804.630 kb on + strand, within HUW76_04000at 804.681 kb on - strand, within HUW76_04000at 804.681 kb on - strand, within HUW76_04000at 804.699 kb on - strand, within HUW76_04000at 804.720 kb on + strand, within HUW76_04000at 804.728 kb on - strand, within HUW76_04000at 804.728 kb on - strand, within HUW76_04000at 804.736 kb on + strand, within HUW76_04000at 804.765 kb on + strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.785 kb on + strand, within HUW76_04000at 804.785 kb on + strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.834 kb on + strand, within HUW76_04000at 804.852 kb on - strand, within HUW76_04000at 804.852 kb on - strand, within HUW76_04000at 804.871 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 805.012 kb on - strand, within HUW76_04000at 805.017 kb on - strand, within HUW76_04000at 805.047 kb on - strand, within HUW76_04000at 805.081 kb on + strand, within HUW76_04000at 805.094 kb on + strand, within HUW76_04000

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Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
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802,539 - -0.5
802,545 - -0.9
802,575 - HUW76_03985 0.14 +0.6
802,812 + HUW76_03985 0.60 +0.9
802,812 + HUW76_03985 0.60 +0.7
802,838 + HUW76_03985 0.65 +0.8
802,838 + HUW76_03985 0.65 +2.0
802,861 + HUW76_03985 0.69 -0.6
802,868 - HUW76_03985 0.71 +0.2
802,868 - HUW76_03985 0.71 +2.5
802,872 - HUW76_03985 0.72 +2.4
802,872 - HUW76_03985 0.72 +3.6
802,933 + HUW76_03985 0.83 +1.0
802,933 + HUW76_03985 0.83 -1.2
802,941 - HUW76_03985 0.85 +2.5
802,941 - HUW76_03985 0.85 +0.1
802,953 + HUW76_03985 0.87 -0.0
803,059 - +0.8
803,059 - -1.9
803,133 + HUW76_03990 0.24 +1.4
803,133 + HUW76_03990 0.24 -2.4
803,163 + HUW76_03990 0.38 -1.6
803,163 + HUW76_03990 0.38 -1.4
803,235 + HUW76_03990 0.74 -2.4
803,235 + HUW76_03990 0.74 -2.3
803,247 + HUW76_03990 0.79 -0.9
803,247 + HUW76_03990 0.79 -2.4
803,254 - HUW76_03990 0.83 +0.9
803,254 - HUW76_03990 0.83 -0.8
803,438 + -0.2
803,446 - +0.1
803,446 - -0.4
803,446 - +2.9
803,446 - +1.1
803,533 + HUW76_03995 0.18 +0.3
803,533 + HUW76_03995 0.18 +1.1
803,548 + HUW76_03995 0.20 -0.5
803,548 + HUW76_03995 0.20 +1.5
803,599 + HUW76_03995 0.27 -0.4
803,661 + HUW76_03995 0.36 -0.1
803,691 + HUW76_03995 0.41 +0.9
803,710 - HUW76_03995 0.43 +0.3
803,710 - HUW76_03995 0.43 +0.1
803,710 - HUW76_03995 0.43 -0.9
803,719 + HUW76_03995 0.45 +2.9
803,719 + HUW76_03995 0.45 -0.8
803,774 + HUW76_03995 0.53 +0.2
803,779 - HUW76_03995 0.54 -2.0
803,822 + HUW76_03995 0.60 +1.3
803,848 + HUW76_03995 0.64 -0.0
803,851 - HUW76_03995 0.64 -0.6
803,856 - HUW76_03995 0.65 -0.7
803,858 + HUW76_03995 0.65 -0.3
803,858 + HUW76_03995 0.65 -1.1
803,858 + HUW76_03995 0.65 +0.9
803,873 + HUW76_03995 0.67 +0.7
803,881 - HUW76_03995 0.68 +0.1
803,881 - HUW76_03995 0.68 +0.3
803,888 + HUW76_03995 0.69 +1.1
803,896 - HUW76_03995 0.71 +0.7
803,896 - HUW76_03995 0.71 -0.1
803,970 - HUW76_03995 0.81 -0.1
803,970 - HUW76_03995 0.81 -0.6
803,991 - HUW76_03995 0.85 -0.4
803,991 - HUW76_03995 0.85 -2.8
804,049 - -1.5
804,052 + +0.2
804,053 - +0.2
804,053 - +1.3
804,053 - -0.3
804,060 - +0.4
804,060 - -1.5
804,060 - +0.3
804,060 - -0.4
804,221 - -0.8
804,230 - -0.6
804,242 - +0.5
804,242 - -1.4
804,257 + +0.4
804,265 + +2.3
804,265 + -0.6
804,541 + HUW76_04000 0.29 +0.2
804,553 + HUW76_04000 0.30 -0.3
804,569 - HUW76_04000 0.31 -1.9
804,569 - HUW76_04000 0.31 -0.8
804,630 + HUW76_04000 0.36 +2.9
804,681 - HUW76_04000 0.40 -1.9
804,681 - HUW76_04000 0.40 -2.2
804,699 - HUW76_04000 0.41 -2.5
804,720 + HUW76_04000 0.43 +2.3
804,728 - HUW76_04000 0.43 -1.0
804,728 - HUW76_04000 0.43 -2.1
804,736 + HUW76_04000 0.44 +2.0
804,765 + HUW76_04000 0.46 -1.6
804,773 - HUW76_04000 0.47 +0.7
804,773 - HUW76_04000 0.47 +0.2
804,773 - HUW76_04000 0.47 +0.9
804,785 + HUW76_04000 0.48 +0.3
804,785 + HUW76_04000 0.48 +2.4
804,793 - HUW76_04000 0.48 -1.8
804,793 - HUW76_04000 0.48 -1.3
804,793 - HUW76_04000 0.48 -2.5
804,834 + HUW76_04000 0.51 +2.5
804,852 - HUW76_04000 0.53 +1.8
804,852 - HUW76_04000 0.53 -1.7
804,871 - HUW76_04000 0.54 +0.1
804,942 - HUW76_04000 0.60 -2.2
804,942 - HUW76_04000 0.60 -1.8
804,942 - HUW76_04000 0.60 -1.5
804,942 - HUW76_04000 0.60 -2.3
804,942 - HUW76_04000 0.60 -1.2
804,942 - HUW76_04000 0.60 -1.0
804,942 - HUW76_04000 0.60 -1.1
804,942 - HUW76_04000 0.60 -1.5
804,952 - HUW76_04000 0.60 -0.8
804,952 - HUW76_04000 0.60 -0.7
804,952 - HUW76_04000 0.60 +1.1
804,952 - HUW76_04000 0.60 -2.3
805,012 - HUW76_04000 0.65 -1.8
805,017 - HUW76_04000 0.65 +0.9
805,047 - HUW76_04000 0.68 -1.9
805,081 + HUW76_04000 0.70 +0.0
805,094 + HUW76_04000 0.71 +1.4

Or see this region's nucleotide sequence