Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02960

Experiment: G2M5_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02950 and HUW76_02955 are separated by 16 nucleotidesHUW76_02955 and HUW76_02960 are separated by 11 nucleotidesHUW76_02960 and HUW76_02965 are separated by 91 nucleotidesHUW76_02965 and HUW76_02970 are separated by 38 nucleotides HUW76_02950: HUW76_02950 - magnesium/cobalt transporter CorA, at 600,820 to 601,875 _02950 HUW76_02955: HUW76_02955 - glycerol-3-phosphate responsive antiterminator, at 601,892 to 602,452 _02955 HUW76_02960: HUW76_02960 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 602,464 to 603,711 _02960 HUW76_02965: HUW76_02965 - OmpA family protein, at 603,803 to 604,351 _02965 HUW76_02970: HUW76_02970 - SH3 domain-containing protein, at 604,390 to 605,592 _02970 Position (kb) 602 603 604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 601.493 kb on + strand, within HUW76_02950at 601.493 kb on + strand, within HUW76_02950at 601.559 kb on - strand, within HUW76_02950at 601.609 kb on - strand, within HUW76_02950at 601.614 kb on + strand, within HUW76_02950at 601.614 kb on + strand, within HUW76_02950at 601.622 kb on - strand, within HUW76_02950at 601.665 kb on + strand, within HUW76_02950at 601.673 kb on - strand, within HUW76_02950at 601.682 kb on - strand, within HUW76_02950at 601.692 kb on - strand, within HUW76_02950at 601.712 kb on + strand, within HUW76_02950at 601.720 kb on - strand, within HUW76_02950at 601.722 kb on - strand, within HUW76_02950at 601.823 kb on + strandat 601.835 kb on + strandat 601.835 kb on + strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.843 kb on - strandat 601.851 kb on - strandat 601.889 kb on + strandat 602.005 kb on + strand, within HUW76_02955at 602.005 kb on + strand, within HUW76_02955at 602.051 kb on - strand, within HUW76_02955at 602.051 kb on - strand, within HUW76_02955at 602.176 kb on + strand, within HUW76_02955at 602.176 kb on + strand, within HUW76_02955at 602.190 kb on + strand, within HUW76_02955at 602.190 kb on + strand, within HUW76_02955at 602.192 kb on + strand, within HUW76_02955at 602.192 kb on + strand, within HUW76_02955at 602.214 kb on + strand, within HUW76_02955at 602.214 kb on - strand, within HUW76_02955at 602.214 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.226 kb on - strand, within HUW76_02955at 602.235 kb on - strand, within HUW76_02955at 602.235 kb on - strand, within HUW76_02955at 602.236 kb on - strand, within HUW76_02955at 602.236 kb on - strand, within HUW76_02955at 602.249 kb on + strand, within HUW76_02955at 602.539 kb on - strandat 602.539 kb on - strandat 602.541 kb on + strandat 602.542 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.544 kb on - strandat 602.549 kb on + strandat 602.549 kb on - strandat 602.549 kb on - strandat 602.549 kb on - strandat 602.576 kb on + strandat 602.576 kb on + strandat 602.651 kb on + strand, within HUW76_02960at 602.837 kb on + strand, within HUW76_02960at 602.874 kb on + strand, within HUW76_02960at 602.874 kb on + strand, within HUW76_02960at 602.943 kb on + strand, within HUW76_02960at 602.943 kb on + strand, within HUW76_02960at 602.951 kb on - strand, within HUW76_02960at 603.021 kb on - strand, within HUW76_02960at 603.102 kb on + strand, within HUW76_02960at 603.102 kb on + strand, within HUW76_02960at 603.135 kb on + strand, within HUW76_02960at 603.204 kb on - strand, within HUW76_02960at 603.318 kb on - strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.352 kb on + strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.360 kb on - strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.362 kb on + strand, within HUW76_02960at 603.364 kb on + strand, within HUW76_02960at 603.364 kb on + strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.370 kb on - strand, within HUW76_02960at 603.372 kb on - strand, within HUW76_02960at 603.377 kb on - strand, within HUW76_02960at 603.417 kb on - strand, within HUW76_02960at 603.417 kb on - strand, within HUW76_02960at 603.436 kb on - strand, within HUW76_02960at 603.456 kb on + strand, within HUW76_02960at 603.465 kb on + strand, within HUW76_02960at 603.465 kb on + strand, within HUW76_02960at 603.506 kb on + strand, within HUW76_02960at 603.514 kb on - strand, within HUW76_02960at 603.514 kb on - strand, within HUW76_02960at 603.514 kb on - strand, within HUW76_02960at 603.514 kb on - strand, within HUW76_02960at 603.540 kb on - strand, within HUW76_02960at 603.540 kb on - strand, within HUW76_02960at 603.711 kb on + strandat 603.719 kb on - strandat 603.719 kb on - strandat 603.721 kb on - strandat 603.721 kb on - strandat 603.816 kb on + strandat 603.829 kb on - strandat 603.888 kb on + strand, within HUW76_02965at 603.888 kb on + strand, within HUW76_02965at 603.888 kb on + strand, within HUW76_02965at 603.888 kb on + strand, within HUW76_02965at 603.895 kb on - strand, within HUW76_02965at 603.895 kb on - strand, within HUW76_02965at 603.896 kb on - strand, within HUW76_02965at 603.896 kb on - strand, within HUW76_02965at 603.908 kb on + strand, within HUW76_02965at 603.960 kb on + strand, within HUW76_02965at 603.981 kb on - strand, within HUW76_02965at 603.981 kb on - strand, within HUW76_02965at 604.045 kb on + strand, within HUW76_02965at 604.064 kb on + strand, within HUW76_02965at 604.064 kb on + strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.072 kb on - strand, within HUW76_02965at 604.096 kb on - strand, within HUW76_02965at 604.096 kb on - strand, within HUW76_02965at 604.108 kb on - strand, within HUW76_02965at 604.192 kb on + strand, within HUW76_02965at 604.192 kb on + strand, within HUW76_02965at 604.192 kb on + strand, within HUW76_02965at 604.192 kb on + strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.200 kb on - strand, within HUW76_02965at 604.237 kb on - strand, within HUW76_02965at 604.263 kb on - strand, within HUW76_02965at 604.263 kb on - strand, within HUW76_02965at 604.288 kb on - strand, within HUW76_02965at 604.295 kb on + strand, within HUW76_02965at 604.295 kb on + strand, within HUW76_02965at 604.303 kb on - strandat 604.303 kb on - strandat 604.423 kb on + strandat 604.423 kb on + strandat 604.423 kb on + strandat 604.455 kb on + strandat 604.486 kb on + strandat 604.596 kb on - strand, within HUW76_02970at 604.596 kb on - strand, within HUW76_02970at 604.624 kb on - strand, within HUW76_02970at 604.624 kb on - strand, within HUW76_02970at 604.624 kb on - strand, within HUW76_02970at 604.667 kb on + strand, within HUW76_02970at 604.667 kb on + strand, within HUW76_02970at 604.670 kb on + strand, within HUW76_02970at 604.670 kb on + strand, within HUW76_02970at 604.670 kb on + strand, within HUW76_02970at 604.678 kb on - strand, within HUW76_02970at 604.678 kb on - strand, within HUW76_02970at 604.678 kb on - strand, within HUW76_02970at 604.684 kb on + strand, within HUW76_02970

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Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
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601,493 + HUW76_02950 0.64 +1.9
601,493 + HUW76_02950 0.64 +0.7
601,559 - HUW76_02950 0.70 -0.7
601,609 - HUW76_02950 0.75 -0.3
601,614 + HUW76_02950 0.75 +0.6
601,614 + HUW76_02950 0.75 +0.6
601,622 - HUW76_02950 0.76 -0.4
601,665 + HUW76_02950 0.80 -2.5
601,673 - HUW76_02950 0.81 -0.8
601,682 - HUW76_02950 0.82 -1.2
601,692 - HUW76_02950 0.83 +4.1
601,712 + HUW76_02950 0.84 +1.1
601,720 - HUW76_02950 0.85 -1.5
601,722 - HUW76_02950 0.85 -1.7
601,823 + +0.7
601,835 + +0.7
601,835 + -1.0
601,843 - -1.0
601,843 - +0.0
601,843 - -1.1
601,843 - +0.0
601,851 - -0.1
601,889 + -2.0
602,005 + HUW76_02955 0.20 -0.8
602,005 + HUW76_02955 0.20 +0.0
602,051 - HUW76_02955 0.28 +0.8
602,051 - HUW76_02955 0.28 -0.0
602,176 + HUW76_02955 0.51 -1.1
602,176 + HUW76_02955 0.51 -0.8
602,190 + HUW76_02955 0.53 +0.6
602,190 + HUW76_02955 0.53 -0.7
602,192 + HUW76_02955 0.53 -1.1
602,192 + HUW76_02955 0.53 -0.4
602,214 + HUW76_02955 0.57 -1.4
602,214 - HUW76_02955 0.57 -3.4
602,214 - HUW76_02955 0.57 -0.5
602,226 - HUW76_02955 0.60 -2.6
602,226 - HUW76_02955 0.60 -2.7
602,226 - HUW76_02955 0.60 -2.0
602,235 - HUW76_02955 0.61 -2.3
602,235 - HUW76_02955 0.61 +0.8
602,236 - HUW76_02955 0.61 -1.7
602,236 - HUW76_02955 0.61 -1.6
602,249 + HUW76_02955 0.64 -0.8
602,539 - -1.1
602,539 - +1.6
602,541 + -0.2
602,542 - -0.3
602,544 - +0.5
602,544 - -2.2
602,544 - -0.3
602,544 - -0.2
602,549 + +2.3
602,549 - -0.2
602,549 - -0.1
602,549 - -0.3
602,576 + +1.2
602,576 + +2.3
602,651 + HUW76_02960 0.15 +1.0
602,837 + HUW76_02960 0.30 +2.5
602,874 + HUW76_02960 0.33 -1.0
602,874 + HUW76_02960 0.33 +0.9
602,943 + HUW76_02960 0.38 +3.3
602,943 + HUW76_02960 0.38 -0.1
602,951 - HUW76_02960 0.39 -2.9
603,021 - HUW76_02960 0.45 -1.0
603,102 + HUW76_02960 0.51 -1.8
603,102 + HUW76_02960 0.51 -1.7
603,135 + HUW76_02960 0.54 +1.3
603,204 - HUW76_02960 0.59 -0.6
603,318 - HUW76_02960 0.68 -3.5
603,352 + HUW76_02960 0.71 -1.7
603,352 + HUW76_02960 0.71 -0.8
603,352 + HUW76_02960 0.71 -0.2
603,352 + HUW76_02960 0.71 -0.3
603,352 + HUW76_02960 0.71 +0.7
603,352 + HUW76_02960 0.71 -0.1
603,352 + HUW76_02960 0.71 -1.6
603,352 + HUW76_02960 0.71 +0.7
603,360 - HUW76_02960 0.72 +0.3
603,360 - HUW76_02960 0.72 -0.3
603,360 - HUW76_02960 0.72 -3.1
603,360 - HUW76_02960 0.72 -1.5
603,362 + HUW76_02960 0.72 -1.4
603,362 + HUW76_02960 0.72 -2.1
603,362 + HUW76_02960 0.72 +1.1
603,362 + HUW76_02960 0.72 -1.6
603,362 + HUW76_02960 0.72 -3.2
603,362 + HUW76_02960 0.72 +0.3
603,362 + HUW76_02960 0.72 +0.3
603,362 + HUW76_02960 0.72 +1.0
603,364 + HUW76_02960 0.72 -0.3
603,364 + HUW76_02960 0.72 +1.0
603,370 - HUW76_02960 0.73 -0.6
603,370 - HUW76_02960 0.73 -0.2
603,370 - HUW76_02960 0.73 +0.5
603,370 - HUW76_02960 0.73 -2.1
603,372 - HUW76_02960 0.73 -0.6
603,377 - HUW76_02960 0.73 +0.2
603,417 - HUW76_02960 0.76 +1.3
603,417 - HUW76_02960 0.76 +0.9
603,436 - HUW76_02960 0.78 -0.8
603,456 + HUW76_02960 0.79 -2.0
603,465 + HUW76_02960 0.80 -1.8
603,465 + HUW76_02960 0.80 +1.7
603,506 + HUW76_02960 0.83 +2.5
603,514 - HUW76_02960 0.84 -1.9
603,514 - HUW76_02960 0.84 -3.5
603,514 - HUW76_02960 0.84 -1.4
603,514 - HUW76_02960 0.84 +0.4
603,540 - HUW76_02960 0.86 -1.6
603,540 - HUW76_02960 0.86 +2.0
603,711 + -0.2
603,719 - +0.3
603,719 - +0.3
603,721 - -1.3
603,721 - -1.7
603,816 + -1.7
603,829 - -2.8
603,888 + HUW76_02965 0.15 +0.4
603,888 + HUW76_02965 0.15 -0.1
603,888 + HUW76_02965 0.15 +2.1
603,888 + HUW76_02965 0.15 -0.0
603,895 - HUW76_02965 0.17 -3.6
603,895 - HUW76_02965 0.17 -2.0
603,896 - HUW76_02965 0.17 -3.8
603,896 - HUW76_02965 0.17 -1.5
603,908 + HUW76_02965 0.19 +3.3
603,960 + HUW76_02965 0.29 -0.2
603,981 - HUW76_02965 0.32 -2.6
603,981 - HUW76_02965 0.32 -2.4
604,045 + HUW76_02965 0.44 +0.6
604,064 + HUW76_02965 0.48 +0.9
604,064 + HUW76_02965 0.48 -1.4
604,072 - HUW76_02965 0.49 -4.3
604,072 - HUW76_02965 0.49 -3.1
604,072 - HUW76_02965 0.49 -0.6
604,072 - HUW76_02965 0.49 -1.1
604,072 - HUW76_02965 0.49 -3.6
604,072 - HUW76_02965 0.49 -3.2
604,072 - HUW76_02965 0.49 -2.6
604,096 - HUW76_02965 0.53 -1.8
604,096 - HUW76_02965 0.53 -1.3
604,108 - HUW76_02965 0.56 -0.5
604,192 + HUW76_02965 0.71 +1.5
604,192 + HUW76_02965 0.71 +1.7
604,192 + HUW76_02965 0.71 +3.0
604,192 + HUW76_02965 0.71 +1.0
604,200 - HUW76_02965 0.72 -1.4
604,200 - HUW76_02965 0.72 -0.7
604,200 - HUW76_02965 0.72 -3.7
604,200 - HUW76_02965 0.72 -3.2
604,200 - HUW76_02965 0.72 +0.8
604,200 - HUW76_02965 0.72 -1.8
604,237 - HUW76_02965 0.79 -2.7
604,263 - HUW76_02965 0.84 -3.4
604,263 - HUW76_02965 0.84 -3.5
604,288 - HUW76_02965 0.88 -0.6
604,295 + HUW76_02965 0.90 -1.8
604,295 + HUW76_02965 0.90 +0.5
604,303 - -1.7
604,303 - +0.6
604,423 + -0.4
604,423 + +1.1
604,423 + +3.0
604,455 + +0.8
604,486 + +0.1
604,596 - HUW76_02970 0.17 +1.5
604,596 - HUW76_02970 0.17 +2.3
604,624 - HUW76_02970 0.19 +0.5
604,624 - HUW76_02970 0.19 +2.3
604,624 - HUW76_02970 0.19 +1.0
604,667 + HUW76_02970 0.23 +3.0
604,667 + HUW76_02970 0.23 +1.1
604,670 + HUW76_02970 0.23 +1.7
604,670 + HUW76_02970 0.23 +1.4
604,670 + HUW76_02970 0.23 +2.3
604,678 - HUW76_02970 0.24 +0.6
604,678 - HUW76_02970 0.24 +0.6
604,678 - HUW76_02970 0.24 +0.8
604,684 + HUW76_02970 0.24 +2.0

Or see this region's nucleotide sequence