Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00850

Experiment: G2M5_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00840 and HUW76_00845 are separated by 78 nucleotidesHUW76_00845 and HUW76_00850 are separated by 10 nucleotidesHUW76_00850 and HUW76_00855 are separated by 16 nucleotidesHUW76_00855 and HUW76_00860 are separated by 14 nucleotidesHUW76_00860 and HUW76_00865 are separated by 52 nucleotidesHUW76_00865 and HUW76_00870 are separated by 9 nucleotidesHUW76_00870 and HUW76_00875 are separated by 7 nucleotidesHUW76_00875 and HUW76_00880 are separated by 4 nucleotidesHUW76_00880 and HUW76_00885 are separated by 10 nucleotidesHUW76_00885 and HUW76_00890 are separated by 8 nucleotidesHUW76_00890 and HUW76_00895 are separated by 16 nucleotidesHUW76_00895 and HUW76_00900 are separated by 10 nucleotidesHUW76_00900 and HUW76_00905 are separated by 4 nucleotides HUW76_00840: HUW76_00840 - DUF4261 domain-containing protein, at 158,926 to 159,669 _00840 HUW76_00845: HUW76_00845 - tRNA-Val, at 159,748 to 159,823 _00845 HUW76_00850: HUW76_00850 - tRNA-Asp, at 159,834 to 159,911 _00850 HUW76_00855: HUW76_00855 - tRNA-Phe, at 159,928 to 160,003 _00855 HUW76_00860: HUW76_00860 - tRNA-Cys, at 160,018 to 160,091 _00860 HUW76_00865: HUW76_00865 - tRNA-Gly, at 160,144 to 160,219 _00865 HUW76_00870: HUW76_00870 - tRNA-Lys, at 160,229 to 160,304 _00870 HUW76_00875: HUW76_00875 - tRNA-Glu, at 160,312 to 160,386 _00875 HUW76_00880: HUW76_00880 - tRNA-Val, at 160,391 to 160,466 _00880 HUW76_00885: HUW76_00885 - tRNA-Asp, at 160,477 to 160,554 _00885 HUW76_00890: HUW76_00890 - tRNA-Thr, at 160,563 to 160,638 _00890 HUW76_00895: HUW76_00895 - tRNA-Gly, at 160,655 to 160,730 _00895 HUW76_00900: HUW76_00900 - tRNA-Ala, at 160,741 to 160,817 _00900 HUW76_00905: HUW76_00905 - tRNA-Met, at 160,822 to 160,898 _00905 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 158.882 kb on + strandat 158.882 kb on + strandat 158.882 kb on + strandat 158.882 kb on + strandat 158.956 kb on - strandat 158.956 kb on - strandat 159.080 kb on + strand, within HUW76_00840at 159.097 kb on + strand, within HUW76_00840at 159.097 kb on + strand, within HUW76_00840at 159.105 kb on - strand, within HUW76_00840at 159.106 kb on + strand, within HUW76_00840at 159.170 kb on + strand, within HUW76_00840at 159.190 kb on + strand, within HUW76_00840at 159.190 kb on + strand, within HUW76_00840at 159.198 kb on - strand, within HUW76_00840at 159.269 kb on - strand, within HUW76_00840at 159.269 kb on - strand, within HUW76_00840at 159.309 kb on + strand, within HUW76_00840at 159.309 kb on + strand, within HUW76_00840at 159.339 kb on - strand, within HUW76_00840at 159.339 kb on - strand, within HUW76_00840at 159.413 kb on + strand, within HUW76_00840at 159.457 kb on - strand, within HUW76_00840at 159.519 kb on - strand, within HUW76_00840at 159.530 kb on + strand, within HUW76_00840at 159.530 kb on + strand, within HUW76_00840at 159.538 kb on - strand, within HUW76_00840at 159.538 kb on - strand, within HUW76_00840at 159.551 kb on + strand, within HUW76_00840at 159.551 kb on + strand, within HUW76_00840at 159.551 kb on + strand, within HUW76_00840at 159.551 kb on + strand, within HUW76_00840at 159.629 kb on - strandat 159.637 kb on - strandat 159.649 kb on + strandat 159.724 kb on + strandat 160.280 kb on + strand, within HUW76_00870at 160.328 kb on + strand, within HUW76_00875at 160.328 kb on + strand, within HUW76_00875at 160.678 kb on + strand, within HUW76_00895at 160.678 kb on + strand, within HUW76_00895at 160.678 kb on + strand, within HUW76_00895at 160.678 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.693 kb on + strand, within HUW76_00895at 160.771 kb on + strand, within HUW76_00900at 160.771 kb on + strand, within HUW76_00900at 160.771 kb on + strand, within HUW76_00900at 160.771 kb on + strand, within HUW76_00900at 160.781 kb on + strand, within HUW76_00900

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Per-strain Table

Position Strand Gene LocusTag Fraction G2M5_D4
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158,882 + -1.8
158,882 + +0.9
158,882 + -0.5
158,882 + -0.6
158,956 - -1.2
158,956 - -0.9
159,080 + HUW76_00840 0.21 -2.6
159,097 + HUW76_00840 0.23 +2.7
159,097 + HUW76_00840 0.23 +0.9
159,105 - HUW76_00840 0.24 +2.1
159,106 + HUW76_00840 0.24 +0.3
159,170 + HUW76_00840 0.33 +0.5
159,190 + HUW76_00840 0.35 -0.4
159,190 + HUW76_00840 0.35 +0.4
159,198 - HUW76_00840 0.37 -0.8
159,269 - HUW76_00840 0.46 +4.3
159,269 - HUW76_00840 0.46 +3.8
159,309 + HUW76_00840 0.51 -0.9
159,309 + HUW76_00840 0.51 -0.5
159,339 - HUW76_00840 0.56 +2.9
159,339 - HUW76_00840 0.56 -0.7
159,413 + HUW76_00840 0.65 -1.1
159,457 - HUW76_00840 0.71 +1.3
159,519 - HUW76_00840 0.80 +0.0
159,530 + HUW76_00840 0.81 -0.1
159,530 + HUW76_00840 0.81 -2.7
159,538 - HUW76_00840 0.82 -0.7
159,538 - HUW76_00840 0.82 +2.1
159,551 + HUW76_00840 0.84 +1.1
159,551 + HUW76_00840 0.84 +0.0
159,551 + HUW76_00840 0.84 +0.6
159,551 + HUW76_00840 0.84 -2.4
159,629 - +0.7
159,637 - +0.1
159,649 + -0.8
159,724 + -2.4
160,280 + HUW76_00870 0.67 +2.3
160,328 + HUW76_00875 0.21 -0.7
160,328 + HUW76_00875 0.21 +0.1
160,678 + HUW76_00895 0.30 -1.8
160,678 + HUW76_00895 0.30 -0.6
160,678 + HUW76_00895 0.30 -0.8
160,678 + HUW76_00895 0.30 -1.2
160,693 + HUW76_00895 0.50 -1.4
160,693 + HUW76_00895 0.50 -0.8
160,693 + HUW76_00895 0.50 -0.9
160,693 + HUW76_00895 0.50 -0.2
160,693 + HUW76_00895 0.50 -1.2
160,693 + HUW76_00895 0.50 -0.2
160,771 + HUW76_00900 0.39 -0.2
160,771 + HUW76_00900 0.39 -2.8
160,771 + HUW76_00900 0.39 -1.0
160,771 + HUW76_00900 0.39 -1.7
160,781 + HUW76_00900 0.52 -2.9

Or see this region's nucleotide sequence