Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19180

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19170 and LRK53_RS19175 are separated by 9 nucleotidesLRK53_RS19175 and LRK53_RS19180 are separated by 60 nucleotides LRK53_RS19170: LRK53_RS19170 - hypothetical protein, at 215,910 to 216,863 _RS19170 LRK53_RS19175: LRK53_RS19175 - hypothetical protein, at 216,873 to 217,073 _RS19175 LRK53_RS19180: LRK53_RS19180 - DsbC family protein, at 217,134 to 217,913 _RS19180 Position (kb) 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 216.237 kb on - strand, within LRK53_RS19170at 216.237 kb on - strand, within LRK53_RS19170at 216.250 kb on + strand, within LRK53_RS19170at 216.251 kb on - strand, within LRK53_RS19170at 216.251 kb on - strand, within LRK53_RS19170at 216.316 kb on + strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.317 kb on - strand, within LRK53_RS19170at 216.425 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.441 kb on + strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.442 kb on - strand, within LRK53_RS19170at 216.651 kb on + strand, within LRK53_RS19170at 216.675 kb on + strand, within LRK53_RS19170at 216.676 kb on - strand, within LRK53_RS19170at 216.867 kb on + strandat 216.868 kb on - strandat 216.868 kb on - strandat 216.913 kb on + strand, within LRK53_RS19175at 216.914 kb on - strand, within LRK53_RS19175at 216.914 kb on - strand, within LRK53_RS19175at 216.957 kb on + strand, within LRK53_RS19175at 217.073 kb on + strandat 217.074 kb on - strandat 217.074 kb on - strandat 217.074 kb on - strandat 217.074 kb on - strandat 217.074 kb on - strandat 217.240 kb on + strand, within LRK53_RS19180at 217.240 kb on + strand, within LRK53_RS19180at 217.241 kb on - strand, within LRK53_RS19180at 217.241 kb on - strand, within LRK53_RS19180at 217.285 kb on + strand, within LRK53_RS19180at 217.285 kb on + strand, within LRK53_RS19180at 217.285 kb on + strand, within LRK53_RS19180at 217.286 kb on - strand, within LRK53_RS19180at 217.286 kb on - strand, within LRK53_RS19180at 217.286 kb on - strand, within LRK53_RS19180at 217.286 kb on - strand, within LRK53_RS19180at 217.357 kb on + strand, within LRK53_RS19180at 217.444 kb on + strand, within LRK53_RS19180at 217.444 kb on + strand, within LRK53_RS19180at 217.444 kb on + strand, within LRK53_RS19180at 217.445 kb on - strand, within LRK53_RS19180at 217.445 kb on - strand, within LRK53_RS19180at 217.445 kb on - strand, within LRK53_RS19180at 217.471 kb on + strand, within LRK53_RS19180at 217.471 kb on + strand, within LRK53_RS19180at 217.471 kb on + strand, within LRK53_RS19180at 217.471 kb on + strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.472 kb on - strand, within LRK53_RS19180at 217.518 kb on - strand, within LRK53_RS19180at 217.540 kb on + strand, within LRK53_RS19180at 217.541 kb on - strand, within LRK53_RS19180at 217.541 kb on - strand, within LRK53_RS19180at 217.669 kb on + strand, within LRK53_RS19180at 217.678 kb on + strand, within LRK53_RS19180at 217.679 kb on - strand, within LRK53_RS19180at 217.699 kb on + strand, within LRK53_RS19180at 217.970 kb on - strandat 217.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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216,237 - LRK53_RS19170 0.34 -1.0
216,237 - LRK53_RS19170 0.34 -0.9
216,250 + LRK53_RS19170 0.36 -1.0
216,251 - LRK53_RS19170 0.36 -0.8
216,251 - LRK53_RS19170 0.36 -0.8
216,316 + LRK53_RS19170 0.43 +1.0
216,317 - LRK53_RS19170 0.43 -0.8
216,317 - LRK53_RS19170 0.43 -0.3
216,317 - LRK53_RS19170 0.43 -0.4
216,425 + LRK53_RS19170 0.54 -1.7
216,441 + LRK53_RS19170 0.56 -0.7
216,441 + LRK53_RS19170 0.56 -1.0
216,441 + LRK53_RS19170 0.56 +0.4
216,441 + LRK53_RS19170 0.56 -1.4
216,441 + LRK53_RS19170 0.56 +0.3
216,441 + LRK53_RS19170 0.56 -2.6
216,442 - LRK53_RS19170 0.56 -0.2
216,442 - LRK53_RS19170 0.56 -1.6
216,442 - LRK53_RS19170 0.56 +0.3
216,442 - LRK53_RS19170 0.56 +1.6
216,442 - LRK53_RS19170 0.56 -0.8
216,442 - LRK53_RS19170 0.56 -2.2
216,442 - LRK53_RS19170 0.56 -0.4
216,442 - LRK53_RS19170 0.56 -0.7
216,442 - LRK53_RS19170 0.56 -0.5
216,442 - LRK53_RS19170 0.56 -0.8
216,442 - LRK53_RS19170 0.56 -1.3
216,442 - LRK53_RS19170 0.56 +0.3
216,442 - LRK53_RS19170 0.56 -0.8
216,651 + LRK53_RS19170 0.78 -1.3
216,675 + LRK53_RS19170 0.80 -2.7
216,676 - LRK53_RS19170 0.80 -0.8
216,867 + -1.3
216,868 - +0.3
216,868 - +1.6
216,913 + LRK53_RS19175 0.20 +0.3
216,914 - LRK53_RS19175 0.20 -1.3
216,914 - LRK53_RS19175 0.20 +2.6
216,957 + LRK53_RS19175 0.42 +0.1
217,073 + -0.8
217,074 - -0.4
217,074 - +0.2
217,074 - -0.3
217,074 - +0.0
217,074 - -0.9
217,240 + LRK53_RS19180 0.14 +0.0
217,240 + LRK53_RS19180 0.14 +0.0
217,241 - LRK53_RS19180 0.14 -1.0
217,241 - LRK53_RS19180 0.14 -0.8
217,285 + LRK53_RS19180 0.19 -1.0
217,285 + LRK53_RS19180 0.19 -0.1
217,285 + LRK53_RS19180 0.19 -1.7
217,286 - LRK53_RS19180 0.19 +0.4
217,286 - LRK53_RS19180 0.19 -0.3
217,286 - LRK53_RS19180 0.19 -0.3
217,286 - LRK53_RS19180 0.19 +0.3
217,357 + LRK53_RS19180 0.29 +0.4
217,444 + LRK53_RS19180 0.40 -1.0
217,444 + LRK53_RS19180 0.40 +0.2
217,444 + LRK53_RS19180 0.40 -1.4
217,445 - LRK53_RS19180 0.40 +0.0
217,445 - LRK53_RS19180 0.40 -1.3
217,445 - LRK53_RS19180 0.40 -0.4
217,471 + LRK53_RS19180 0.43 -0.3
217,471 + LRK53_RS19180 0.43 +1.6
217,471 + LRK53_RS19180 0.43 -0.4
217,471 + LRK53_RS19180 0.43 -1.0
217,472 - LRK53_RS19180 0.43 -1.8
217,472 - LRK53_RS19180 0.43 -1.0
217,472 - LRK53_RS19180 0.43 +0.2
217,472 - LRK53_RS19180 0.43 -0.0
217,472 - LRK53_RS19180 0.43 +0.4
217,472 - LRK53_RS19180 0.43 +0.7
217,472 - LRK53_RS19180 0.43 -0.6
217,472 - LRK53_RS19180 0.43 -0.8
217,472 - LRK53_RS19180 0.43 +1.5
217,472 - LRK53_RS19180 0.43 -1.4
217,472 - LRK53_RS19180 0.43 -0.9
217,518 - LRK53_RS19180 0.49 -1.3
217,540 + LRK53_RS19180 0.52 -2.2
217,541 - LRK53_RS19180 0.52 +0.3
217,541 - LRK53_RS19180 0.52 -0.6
217,669 + LRK53_RS19180 0.69 +0.2
217,678 + LRK53_RS19180 0.70 -0.4
217,679 - LRK53_RS19180 0.70 +0.0
217,699 + LRK53_RS19180 0.72 +0.4
217,970 - -1.1
217,970 - -0.9

Or see this region's nucleotide sequence