Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19100 and LRK53_RS19105 are separated by 99 nucleotides LRK53_RS19105 and LRK53_RS19110 are separated by 61 nucleotides LRK53_RS19110 and LRK53_RS19115 are separated by 349 nucleotides LRK53_RS19115 and LRK53_RS19120 are separated by 11 nucleotides
LRK53_RS19100: LRK53_RS19100 - hypothetical protein, at 206,530 to 206,901
_RS19100
LRK53_RS19105: LRK53_RS19105 - hypothetical protein, at 207,001 to 207,444
_RS19105
LRK53_RS19110: LRK53_RS19110 - hypothetical protein, at 207,506 to 207,709
_RS19110
LRK53_RS19115: LRK53_RS19115 - hypothetical protein, at 208,059 to 208,373
_RS19115
LRK53_RS19120: LRK53_RS19120 - hypothetical protein, at 208,385 to 208,666
_RS19120
Position (kb) 207
208 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.740 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.843 kb on - strand, within LRK53_RS19100 at 206.967 kb on + strand at 206.968 kb on - strand at 206.968 kb on - strand at 206.968 kb on - strand at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.473 kb on + strand at 207.474 kb on - strand at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.660 kb on - strand, within LRK53_RS19110 at 207.796 kb on + strand at 207.796 kb on + strand at 207.797 kb on - strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 208.103 kb on + strand, within LRK53_RS19115 at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.375 kb on - strand at 208.375 kb on - strand at 208.375 kb on - strand at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.431 kb on - strand, within LRK53_RS19120 at 208.431 kb on - strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.499 kb on + strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120 at 208.500 kb on - strand, within LRK53_RS19120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM remove 206,581 + LRK53_RS19100 0.14 -0.6 206,581 + LRK53_RS19100 0.14 -0.7 206,581 + LRK53_RS19100 0.14 -1.8 206,582 - LRK53_RS19100 0.14 +1.0 206,582 - LRK53_RS19100 0.14 -0.4 206,740 + LRK53_RS19100 0.56 -2.0 206,842 + LRK53_RS19100 0.84 +1.3 206,842 + LRK53_RS19100 0.84 -0.6 206,843 - LRK53_RS19100 0.84 -0.4 206,967 + -1.3 206,968 - -2.0 206,968 - +0.0 206,968 - +1.0 207,139 + LRK53_RS19105 0.31 -0.9 207,139 + LRK53_RS19105 0.31 -4.0 207,139 + LRK53_RS19105 0.31 -1.3 207,139 + LRK53_RS19105 0.31 -0.6 207,139 + LRK53_RS19105 0.31 -1.6 207,139 + LRK53_RS19105 0.31 +1.0 207,139 + LRK53_RS19105 0.31 -0.6 207,139 + LRK53_RS19105 0.31 +0.0 207,140 - LRK53_RS19105 0.31 -0.6 207,140 - LRK53_RS19105 0.31 -0.4 207,140 - LRK53_RS19105 0.31 -0.6 207,140 - LRK53_RS19105 0.31 -0.6 207,140 - LRK53_RS19105 0.31 -0.3 207,140 - LRK53_RS19105 0.31 +0.0 207,140 - LRK53_RS19105 0.31 -2.3 207,140 - LRK53_RS19105 0.31 -0.2 207,140 - LRK53_RS19105 0.31 +2.6 207,140 - LRK53_RS19105 0.31 -0.9 207,473 + -0.4 207,474 - -0.8 207,659 + LRK53_RS19110 0.75 +1.3 207,659 + LRK53_RS19110 0.75 -0.1 207,659 + LRK53_RS19110 0.75 +0.0 207,660 - LRK53_RS19110 0.75 -1.0 207,796 + -0.6 207,796 + -1.0 207,797 - -0.6 207,856 + +0.3 207,856 + +0.0 207,856 + +0.0 207,856 + -0.3 207,856 + -0.2 207,856 + +1.0 207,857 - +0.0 207,857 - -0.3 207,857 - -1.8 207,857 - -0.6 207,857 - +1.3 207,857 - -1.4 207,857 - +1.0 207,881 + +0.4 207,881 + +1.0 207,881 + -1.6 207,881 + +0.0 207,881 + -0.7 207,881 + +0.4 207,881 + +0.4 207,881 + -0.4 207,881 + -1.3 207,881 + +1.0 207,881 + -0.6 207,881 + -0.7 207,882 - -2.1 207,882 - +0.0 207,882 - -1.8 207,882 - -1.3 207,882 - -0.6 207,882 - -0.9 207,882 - -0.6 207,882 - +0.0 207,882 - -0.3 207,882 - -2.0 207,882 - +0.0 207,882 - -2.7 207,882 - -1.0 207,882 - -1.8 207,882 - +0.6 208,103 + LRK53_RS19115 0.14 -1.8 208,374 + -0.8 208,374 + -0.1 208,374 + -1.1 208,374 + -0.6 208,374 + -0.8 208,374 + +1.0 208,375 - -0.6 208,375 - -1.5 208,375 - +0.7 208,430 + LRK53_RS19120 0.16 +0.4 208,430 + LRK53_RS19120 0.16 -0.3 208,430 + LRK53_RS19120 0.16 -0.2 208,430 + LRK53_RS19120 0.16 -0.6 208,431 - LRK53_RS19120 0.16 +0.6 208,431 - LRK53_RS19120 0.16 -0.8 208,499 + LRK53_RS19120 0.40 +1.0 208,499 + LRK53_RS19120 0.40 +1.0 208,499 + LRK53_RS19120 0.40 +0.0 208,499 + LRK53_RS19120 0.40 -0.6 208,499 + LRK53_RS19120 0.40 -1.0 208,499 + LRK53_RS19120 0.40 -0.7 208,499 + LRK53_RS19120 0.40 -1.3 208,499 + LRK53_RS19120 0.40 -0.5 208,499 + LRK53_RS19120 0.40 -1.3 208,499 + LRK53_RS19120 0.40 -2.1 208,499 + LRK53_RS19120 0.40 +1.0 208,500 - LRK53_RS19120 0.41 -1.1 208,500 - LRK53_RS19120 0.41 -0.2 208,500 - LRK53_RS19120 0.41 -0.5 208,500 - LRK53_RS19120 0.41 -2.3 208,500 - LRK53_RS19120 0.41 -2.0 208,500 - LRK53_RS19120 0.41 +0.0 208,500 - LRK53_RS19120 0.41 -1.4 208,500 - LRK53_RS19120 0.41 -1.9 208,500 - LRK53_RS19120 0.41 +2.6 208,500 - LRK53_RS19120 0.41 -0.1 208,500 - LRK53_RS19120 0.41 -2.0 208,500 - LRK53_RS19120 0.41 +0.0 208,500 - LRK53_RS19120 0.41 +1.0 208,500 - LRK53_RS19120 0.41 -0.6
Or see this region's nucleotide sequence