Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19015

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19010 and LRK53_RS19015 are separated by 266 nucleotidesLRK53_RS19015 and LRK53_RS19020 are separated by 76 nucleotidesLRK53_RS19020 and LRK53_RS19025 overlap by 8 nucleotides LRK53_RS19010: LRK53_RS19010 - hypothetical protein, at 192,121 to 193,170 _RS19010 LRK53_RS19015: LRK53_RS19015 - hypothetical protein, at 193,437 to 194,498 _RS19015 LRK53_RS19020: LRK53_RS19020 - hypothetical protein, at 194,575 to 194,895 _RS19020 LRK53_RS19025: LRK53_RS19025 - DUF2786 domain-containing protein, at 194,888 to 195,448 _RS19025 Position (kb) 193 194 195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 192.479 kb on + strand, within LRK53_RS19010at 192.480 kb on - strand, within LRK53_RS19010at 192.480 kb on - strand, within LRK53_RS19010at 192.550 kb on + strand, within LRK53_RS19010at 192.720 kb on + strand, within LRK53_RS19010at 192.720 kb on + strand, within LRK53_RS19010at 192.720 kb on + strand, within LRK53_RS19010at 192.721 kb on - strand, within LRK53_RS19010at 192.721 kb on - strand, within LRK53_RS19010at 192.747 kb on + strand, within LRK53_RS19010at 192.747 kb on + strand, within LRK53_RS19010at 192.747 kb on + strand, within LRK53_RS19010at 192.748 kb on - strand, within LRK53_RS19010at 192.748 kb on - strand, within LRK53_RS19010at 192.797 kb on + strand, within LRK53_RS19010at 192.819 kb on - strand, within LRK53_RS19010at 192.819 kb on - strand, within LRK53_RS19010at 192.836 kb on + strand, within LRK53_RS19010at 192.858 kb on - strand, within LRK53_RS19010at 192.858 kb on - strand, within LRK53_RS19010at 192.860 kb on + strand, within LRK53_RS19010at 192.860 kb on + strand, within LRK53_RS19010at 192.863 kb on + strand, within LRK53_RS19010at 192.863 kb on + strand, within LRK53_RS19010at 192.863 kb on + strand, within LRK53_RS19010at 192.864 kb on - strand, within LRK53_RS19010at 192.864 kb on - strand, within LRK53_RS19010at 192.878 kb on + strand, within LRK53_RS19010at 192.878 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.923 kb on + strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.924 kb on - strand, within LRK53_RS19010at 192.938 kb on + strand, within LRK53_RS19010at 192.938 kb on + strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.939 kb on - strand, within LRK53_RS19010at 192.962 kb on - strand, within LRK53_RS19010at 193.011 kb on - strand, within LRK53_RS19010at 193.139 kb on + strandat 193.140 kb on - strandat 193.209 kb on + strandat 193.209 kb on + strandat 193.209 kb on + strandat 193.210 kb on - strandat 193.210 kb on - strandat 193.210 kb on - strandat 194.042 kb on - strand, within LRK53_RS19015at 194.049 kb on + strand, within LRK53_RS19015at 194.050 kb on - strand, within LRK53_RS19015at 194.178 kb on - strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.222 kb on + strand, within LRK53_RS19015at 194.223 kb on - strand, within LRK53_RS19015at 194.223 kb on - strand, within LRK53_RS19015at 194.389 kb on - strand, within LRK53_RS19015at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.627 kb on + strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.628 kb on - strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.812 kb on - strand, within LRK53_RS19020at 195.025 kb on - strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.106 kb on - strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.375 kb on - strand, within LRK53_RS19025at 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.480 kb on + strandat 195.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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192,479 + LRK53_RS19010 0.34 +0.0
192,480 - LRK53_RS19010 0.34 +1.0
192,480 - LRK53_RS19010 0.34 -0.6
192,550 + LRK53_RS19010 0.41 -0.4
192,720 + LRK53_RS19010 0.57 -0.7
192,720 + LRK53_RS19010 0.57 -0.6
192,720 + LRK53_RS19010 0.57 -0.6
192,721 - LRK53_RS19010 0.57 +1.4
192,721 - LRK53_RS19010 0.57 +0.7
192,747 + LRK53_RS19010 0.60 -1.8
192,747 + LRK53_RS19010 0.60 -0.8
192,747 + LRK53_RS19010 0.60 -1.0
192,748 - LRK53_RS19010 0.60 -0.6
192,748 - LRK53_RS19010 0.60 -0.8
192,797 + LRK53_RS19010 0.64 +0.0
192,819 - LRK53_RS19010 0.66 -0.9
192,819 - LRK53_RS19010 0.66 -1.1
192,836 + LRK53_RS19010 0.68 -1.0
192,858 - LRK53_RS19010 0.70 +1.4
192,858 - LRK53_RS19010 0.70 +1.0
192,860 + LRK53_RS19010 0.70 +0.8
192,860 + LRK53_RS19010 0.70 -1.0
192,863 + LRK53_RS19010 0.71 +2.0
192,863 + LRK53_RS19010 0.71 +0.4
192,863 + LRK53_RS19010 0.71 -0.7
192,864 - LRK53_RS19010 0.71 -0.9
192,864 - LRK53_RS19010 0.71 +0.5
192,878 + LRK53_RS19010 0.72 -2.1
192,878 + LRK53_RS19010 0.72 -1.3
192,923 + LRK53_RS19010 0.76 +0.0
192,923 + LRK53_RS19010 0.76 +0.6
192,923 + LRK53_RS19010 0.76 -0.7
192,923 + LRK53_RS19010 0.76 -1.0
192,923 + LRK53_RS19010 0.76 +0.0
192,923 + LRK53_RS19010 0.76 +1.0
192,924 - LRK53_RS19010 0.76 -0.6
192,924 - LRK53_RS19010 0.76 -1.2
192,924 - LRK53_RS19010 0.76 -1.9
192,924 - LRK53_RS19010 0.76 -1.7
192,924 - LRK53_RS19010 0.76 +0.0
192,924 - LRK53_RS19010 0.76 -1.3
192,924 - LRK53_RS19010 0.76 -1.6
192,924 - LRK53_RS19010 0.76 +2.0
192,924 - LRK53_RS19010 0.76 -0.9
192,938 + LRK53_RS19010 0.78 +1.0
192,938 + LRK53_RS19010 0.78 +0.3
192,939 - LRK53_RS19010 0.78 -1.1
192,939 - LRK53_RS19010 0.78 +2.6
192,939 - LRK53_RS19010 0.78 -1.0
192,939 - LRK53_RS19010 0.78 -1.1
192,939 - LRK53_RS19010 0.78 +1.0
192,939 - LRK53_RS19010 0.78 +0.4
192,939 - LRK53_RS19010 0.78 -2.4
192,962 - LRK53_RS19010 0.80 -0.6
193,011 - LRK53_RS19010 0.85 -2.1
193,139 + -1.3
193,140 - -0.3
193,209 + -0.2
193,209 + +0.0
193,209 + -0.0
193,210 - -3.8
193,210 - -0.6
193,210 - -0.7
194,042 - LRK53_RS19015 0.57 -1.6
194,049 + LRK53_RS19015 0.58 +0.4
194,050 - LRK53_RS19015 0.58 -2.1
194,178 - LRK53_RS19015 0.70 -4.3
194,222 + LRK53_RS19015 0.74 -1.6
194,222 + LRK53_RS19015 0.74 -1.0
194,222 + LRK53_RS19015 0.74 -1.2
194,223 - LRK53_RS19015 0.74 +0.0
194,223 - LRK53_RS19015 0.74 -1.6
194,389 - LRK53_RS19015 0.90 -1.0
194,627 + LRK53_RS19020 0.16 +0.2
194,627 + LRK53_RS19020 0.16 -1.6
194,627 + LRK53_RS19020 0.16 -2.3
194,627 + LRK53_RS19020 0.16 -0.2
194,628 - LRK53_RS19020 0.17 +0.1
194,628 - LRK53_RS19020 0.17 +0.0
194,628 - LRK53_RS19020 0.17 +0.3
194,782 + LRK53_RS19020 0.64 -0.6
194,782 + LRK53_RS19020 0.64 -1.6
194,782 + LRK53_RS19020 0.64 +1.0
194,782 + LRK53_RS19020 0.64 -1.0
194,782 + LRK53_RS19020 0.64 -1.4
194,783 - LRK53_RS19020 0.65 +0.0
194,783 - LRK53_RS19020 0.65 +1.0
194,783 - LRK53_RS19020 0.65 -1.1
194,783 - LRK53_RS19020 0.65 -0.6
194,812 - LRK53_RS19020 0.74 +1.0
195,025 - LRK53_RS19025 0.24 +0.0
195,105 + LRK53_RS19025 0.39 -2.1
195,105 + LRK53_RS19025 0.39 -1.3
195,106 - LRK53_RS19025 0.39 -1.3
195,185 + LRK53_RS19025 0.53 -1.4
195,185 + LRK53_RS19025 0.53 -0.2
195,185 + LRK53_RS19025 0.53 +1.0
195,185 + LRK53_RS19025 0.53 -1.0
195,185 + LRK53_RS19025 0.53 -1.7
195,186 - LRK53_RS19025 0.53 +1.0
195,186 - LRK53_RS19025 0.53 -1.3
195,186 - LRK53_RS19025 0.53 -1.5
195,186 - LRK53_RS19025 0.53 -0.6
195,186 - LRK53_RS19025 0.53 +1.0
195,186 - LRK53_RS19025 0.53 -0.9
195,186 - LRK53_RS19025 0.53 -0.7
195,206 + LRK53_RS19025 0.57 -0.7
195,206 + LRK53_RS19025 0.57 -0.9
195,206 + LRK53_RS19025 0.57 -0.3
195,207 - LRK53_RS19025 0.57 +0.0
195,207 - LRK53_RS19025 0.57 -2.0
195,207 - LRK53_RS19025 0.57 +0.0
195,207 - LRK53_RS19025 0.57 +1.0
195,207 - LRK53_RS19025 0.57 -0.6
195,207 - LRK53_RS19025 0.57 -0.2
195,207 - LRK53_RS19025 0.57 -0.3
195,374 + LRK53_RS19025 0.87 -1.5
195,374 + LRK53_RS19025 0.87 +0.3
195,374 + LRK53_RS19025 0.87 -0.9
195,375 - LRK53_RS19025 0.87 +0.4
195,475 + -0.9
195,475 + -2.4
195,475 + -1.2
195,475 + -1.0
195,476 - -2.0
195,476 - -2.6
195,476 - -0.7
195,476 - -1.1
195,476 - -1.6
195,480 + +0.7
195,481 - -0.6

Or see this region's nucleotide sequence