Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18770

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18765 and LRK53_RS18770 are separated by 47 nucleotidesLRK53_RS18770 and LRK53_RS18775 are separated by 92 nucleotidesLRK53_RS18775 and LRK53_RS18780 overlap by 4 nucleotides LRK53_RS18765: LRK53_RS18765 - RelA/SpoT domain-containing protein, at 142,840 to 143,862 _RS18765 LRK53_RS18770: LRK53_RS18770 - hypothetical protein, at 143,910 to 144,467 _RS18770 LRK53_RS18775: LRK53_RS18775 - hypothetical protein, at 144,560 to 145,018 _RS18775 LRK53_RS18780: LRK53_RS18780 - hypothetical protein, at 145,015 to 145,809 _RS18780 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 142.930 kb on + strandat 142.930 kb on + strandat 142.931 kb on - strandat 142.931 kb on - strandat 142.942 kb on + strandat 142.966 kb on + strand, within LRK53_RS18765at 142.966 kb on + strand, within LRK53_RS18765at 142.966 kb on + strand, within LRK53_RS18765at 142.967 kb on - strand, within LRK53_RS18765at 143.065 kb on + strand, within LRK53_RS18765at 143.065 kb on + strand, within LRK53_RS18765at 143.065 kb on + strand, within LRK53_RS18765at 143.066 kb on - strand, within LRK53_RS18765at 143.066 kb on - strand, within LRK53_RS18765at 143.066 kb on - strand, within LRK53_RS18765at 143.066 kb on - strand, within LRK53_RS18765at 143.066 kb on - strand, within LRK53_RS18765at 143.091 kb on + strand, within LRK53_RS18765at 143.092 kb on - strand, within LRK53_RS18765at 143.224 kb on + strand, within LRK53_RS18765at 143.224 kb on + strand, within LRK53_RS18765at 143.225 kb on - strand, within LRK53_RS18765at 143.230 kb on + strand, within LRK53_RS18765at 143.230 kb on + strand, within LRK53_RS18765at 143.230 kb on + strand, within LRK53_RS18765at 143.230 kb on + strand, within LRK53_RS18765at 143.231 kb on - strand, within LRK53_RS18765at 143.231 kb on - strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.278 kb on + strand, within LRK53_RS18765at 143.279 kb on - strand, within LRK53_RS18765at 143.279 kb on - strand, within LRK53_RS18765at 143.279 kb on - strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.284 kb on + strand, within LRK53_RS18765at 143.285 kb on - strand, within LRK53_RS18765at 143.285 kb on - strand, within LRK53_RS18765at 143.285 kb on - strand, within LRK53_RS18765at 143.285 kb on - strand, within LRK53_RS18765at 143.285 kb on - strand, within LRK53_RS18765at 143.341 kb on + strand, within LRK53_RS18765at 143.444 kb on - strand, within LRK53_RS18765at 143.504 kb on + strand, within LRK53_RS18765at 143.505 kb on - strand, within LRK53_RS18765at 143.532 kb on - strand, within LRK53_RS18765at 143.532 kb on - strand, within LRK53_RS18765at 143.539 kb on + strand, within LRK53_RS18765at 143.540 kb on - strand, within LRK53_RS18765at 143.540 kb on - strand, within LRK53_RS18765at 143.540 kb on - strand, within LRK53_RS18765at 143.627 kb on - strand, within LRK53_RS18765at 143.627 kb on - strand, within LRK53_RS18765at 143.671 kb on + strand, within LRK53_RS18765at 143.671 kb on + strand, within LRK53_RS18765at 143.672 kb on - strand, within LRK53_RS18765at 143.702 kb on + strand, within LRK53_RS18765at 143.791 kb on + strandat 143.791 kb on + strandat 143.791 kb on + strandat 143.791 kb on + strandat 143.792 kb on - strandat 143.792 kb on - strandat 143.792 kb on - strandat 143.792 kb on - strandat 143.792 kb on - strandat 144.324 kb on + strand, within LRK53_RS18770at 144.325 kb on - strand, within LRK53_RS18770at 144.325 kb on - strand, within LRK53_RS18770at 144.508 kb on + strandat 144.669 kb on - strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.869 kb on + strand, within LRK53_RS18775at 144.869 kb on + strand, within LRK53_RS18775at 144.870 kb on - strand, within LRK53_RS18775at 144.927 kb on - strand, within LRK53_RS18775at 145.148 kb on + strand, within LRK53_RS18780at 145.148 kb on + strand, within LRK53_RS18780at 145.149 kb on - strand, within LRK53_RS18780at 145.277 kb on + strand, within LRK53_RS18780at 145.349 kb on + strand, within LRK53_RS18780at 145.349 kb on + strand, within LRK53_RS18780at 145.380 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.407 kb on - strand, within LRK53_RS18780

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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142,930 + +1.0
142,930 + +0.8
142,931 - +0.4
142,931 - -0.8
142,942 + -0.6
142,966 + LRK53_RS18765 0.12 -1.5
142,966 + LRK53_RS18765 0.12 +0.0
142,966 + LRK53_RS18765 0.12 -1.3
142,967 - LRK53_RS18765 0.12 -1.6
143,065 + LRK53_RS18765 0.22 -1.1
143,065 + LRK53_RS18765 0.22 -0.6
143,065 + LRK53_RS18765 0.22 -1.4
143,066 - LRK53_RS18765 0.22 +0.0
143,066 - LRK53_RS18765 0.22 +0.3
143,066 - LRK53_RS18765 0.22 -0.8
143,066 - LRK53_RS18765 0.22 -1.3
143,066 - LRK53_RS18765 0.22 -0.7
143,091 + LRK53_RS18765 0.25 +0.1
143,092 - LRK53_RS18765 0.25 -0.3
143,224 + LRK53_RS18765 0.38 -0.1
143,224 + LRK53_RS18765 0.38 +0.0
143,225 - LRK53_RS18765 0.38 -1.1
143,230 + LRK53_RS18765 0.38 +0.0
143,230 + LRK53_RS18765 0.38 -0.1
143,230 + LRK53_RS18765 0.38 -1.4
143,230 + LRK53_RS18765 0.38 +2.0
143,231 - LRK53_RS18765 0.38 +0.0
143,231 - LRK53_RS18765 0.38 -1.6
143,278 + LRK53_RS18765 0.43 +0.3
143,278 + LRK53_RS18765 0.43 +0.0
143,278 + LRK53_RS18765 0.43 -0.3
143,278 + LRK53_RS18765 0.43 -1.3
143,278 + LRK53_RS18765 0.43 +0.4
143,278 + LRK53_RS18765 0.43 -1.6
143,278 + LRK53_RS18765 0.43 -0.8
143,279 - LRK53_RS18765 0.43 -1.4
143,279 - LRK53_RS18765 0.43 -1.3
143,279 - LRK53_RS18765 0.43 -1.1
143,284 + LRK53_RS18765 0.43 +0.2
143,284 + LRK53_RS18765 0.43 -1.1
143,284 + LRK53_RS18765 0.43 -2.1
143,284 + LRK53_RS18765 0.43 +1.0
143,284 + LRK53_RS18765 0.43 -0.9
143,284 + LRK53_RS18765 0.43 -0.3
143,285 - LRK53_RS18765 0.43 -0.1
143,285 - LRK53_RS18765 0.43 +0.6
143,285 - LRK53_RS18765 0.43 -1.0
143,285 - LRK53_RS18765 0.43 +0.4
143,285 - LRK53_RS18765 0.43 -2.0
143,341 + LRK53_RS18765 0.49 -0.3
143,444 - LRK53_RS18765 0.59 -0.8
143,504 + LRK53_RS18765 0.65 +0.0
143,505 - LRK53_RS18765 0.65 +1.0
143,532 - LRK53_RS18765 0.68 -1.0
143,532 - LRK53_RS18765 0.68 +0.3
143,539 + LRK53_RS18765 0.68 -2.6
143,540 - LRK53_RS18765 0.68 -1.3
143,540 - LRK53_RS18765 0.68 -0.3
143,540 - LRK53_RS18765 0.68 +0.4
143,627 - LRK53_RS18765 0.77 -0.9
143,627 - LRK53_RS18765 0.77 +0.4
143,671 + LRK53_RS18765 0.81 +1.0
143,671 + LRK53_RS18765 0.81 -1.6
143,672 - LRK53_RS18765 0.81 -0.6
143,702 + LRK53_RS18765 0.84 +0.7
143,791 + -1.0
143,791 + -0.6
143,791 + -1.0
143,791 + +0.0
143,792 - -0.4
143,792 - -1.0
143,792 - +0.0
143,792 - -0.6
143,792 - +1.0
144,324 + LRK53_RS18770 0.74 -1.3
144,325 - LRK53_RS18770 0.74 -2.0
144,325 - LRK53_RS18770 0.74 -1.6
144,508 + +0.9
144,669 - LRK53_RS18775 0.24 +0.1
144,834 + LRK53_RS18775 0.60 -1.4
144,834 + LRK53_RS18775 0.60 -2.0
144,834 + LRK53_RS18775 0.60 +0.4
144,834 + LRK53_RS18775 0.60 -0.4
144,834 + LRK53_RS18775 0.60 +0.7
144,835 - LRK53_RS18775 0.60 -0.6
144,835 - LRK53_RS18775 0.60 +0.7
144,835 - LRK53_RS18775 0.60 -0.4
144,835 - LRK53_RS18775 0.60 +0.8
144,835 - LRK53_RS18775 0.60 -1.1
144,835 - LRK53_RS18775 0.60 -1.2
144,835 - LRK53_RS18775 0.60 -1.5
144,835 - LRK53_RS18775 0.60 -0.7
144,869 + LRK53_RS18775 0.67 -0.4
144,869 + LRK53_RS18775 0.67 +0.0
144,870 - LRK53_RS18775 0.68 -1.3
144,927 - LRK53_RS18775 0.80 +1.0
145,148 + LRK53_RS18780 0.17 -1.6
145,148 + LRK53_RS18780 0.17 -1.6
145,149 - LRK53_RS18780 0.17 -0.8
145,277 + LRK53_RS18780 0.33 +0.4
145,349 + LRK53_RS18780 0.42 +0.0
145,349 + LRK53_RS18780 0.42 -0.8
145,380 + LRK53_RS18780 0.46 -1.5
145,406 + LRK53_RS18780 0.49 -0.6
145,406 + LRK53_RS18780 0.49 -1.0
145,406 + LRK53_RS18780 0.49 +1.0
145,406 + LRK53_RS18780 0.49 -0.4
145,406 + LRK53_RS18780 0.49 -0.2
145,407 - LRK53_RS18780 0.49 -0.3

Or see this region's nucleotide sequence