Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18635

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18630 and LRK53_RS18635 overlap by 4 nucleotidesLRK53_RS18635 and LRK53_RS18640 are separated by 278 nucleotides LRK53_RS18630: LRK53_RS18630 - glycosyltransferase family 39 protein, at 110,125 to 111,840 _RS18630 LRK53_RS18635: LRK53_RS18635 - glycosyltransferase family 2 protein, at 111,837 to 112,856 _RS18635 LRK53_RS18640: LRK53_RS18640 - Tn3 family transposase, at 113,135 to 116,239 _RS18640 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.838 kb on - strand, within LRK53_RS18630at 110.845 kb on + strand, within LRK53_RS18630at 110.845 kb on + strand, within LRK53_RS18630at 110.845 kb on + strand, within LRK53_RS18630at 110.846 kb on - strand, within LRK53_RS18630at 110.846 kb on - strand, within LRK53_RS18630at 110.931 kb on + strand, within LRK53_RS18630at 111.077 kb on + strand, within LRK53_RS18630at 111.078 kb on - strand, within LRK53_RS18630at 111.148 kb on + strand, within LRK53_RS18630at 111.149 kb on - strand, within LRK53_RS18630at 111.149 kb on - strand, within LRK53_RS18630at 111.149 kb on - strand, within LRK53_RS18630at 111.178 kb on + strand, within LRK53_RS18630at 111.179 kb on - strand, within LRK53_RS18630at 111.399 kb on + strand, within LRK53_RS18630at 111.399 kb on + strand, within LRK53_RS18630at 111.399 kb on + strand, within LRK53_RS18630at 111.399 kb on + strand, within LRK53_RS18630at 111.400 kb on - strand, within LRK53_RS18630at 111.400 kb on - strand, within LRK53_RS18630at 111.400 kb on - strand, within LRK53_RS18630at 111.400 kb on - strand, within LRK53_RS18630at 111.421 kb on + strand, within LRK53_RS18630at 111.436 kb on + strand, within LRK53_RS18630at 111.437 kb on - strand, within LRK53_RS18630at 111.437 kb on - strand, within LRK53_RS18630at 111.473 kb on - strand, within LRK53_RS18630at 111.569 kb on + strand, within LRK53_RS18630at 111.569 kb on + strand, within LRK53_RS18630at 111.570 kb on - strand, within LRK53_RS18630at 111.570 kb on - strand, within LRK53_RS18630at 111.590 kb on + strand, within LRK53_RS18630at 111.591 kb on - strand, within LRK53_RS18630at 111.789 kb on - strandat 111.943 kb on + strand, within LRK53_RS18635at 111.943 kb on + strand, within LRK53_RS18635at 111.943 kb on + strand, within LRK53_RS18635at 111.944 kb on - strand, within LRK53_RS18635at 111.971 kb on - strand, within LRK53_RS18635at 111.971 kb on - strand, within LRK53_RS18635at 111.971 kb on - strand, within LRK53_RS18635at 111.986 kb on - strand, within LRK53_RS18635at 112.111 kb on + strand, within LRK53_RS18635at 112.112 kb on - strand, within LRK53_RS18635at 112.219 kb on + strand, within LRK53_RS18635at 112.220 kb on - strand, within LRK53_RS18635at 112.220 kb on - strand, within LRK53_RS18635at 112.220 kb on - strand, within LRK53_RS18635at 112.220 kb on - strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.261 kb on + strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.262 kb on - strand, within LRK53_RS18635at 112.383 kb on - strand, within LRK53_RS18635at 112.383 kb on - strand, within LRK53_RS18635at 112.490 kb on - strand, within LRK53_RS18635at 112.535 kb on + strand, within LRK53_RS18635at 112.536 kb on - strand, within LRK53_RS18635at 112.536 kb on - strand, within LRK53_RS18635at 112.695 kb on + strand, within LRK53_RS18635at 112.695 kb on + strand, within LRK53_RS18635at 112.696 kb on - strand, within LRK53_RS18635at 112.696 kb on - strand, within LRK53_RS18635at 112.696 kb on - strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.732 kb on + strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.733 kb on - strand, within LRK53_RS18635at 112.816 kb on + strandat 112.817 kb on - strandat 112.873 kb on + strandat 112.892 kb on + strandat 112.892 kb on + strandat 112.893 kb on - strandat 112.893 kb on - strandat 112.893 kb on - strandat 113.060 kb on + strandat 113.198 kb on + strandat 113.198 kb on + strandat 113.198 kb on + strandat 113.237 kb on + strandat 113.247 kb on + strandat 113.247 kb on + strandat 113.248 kb on - strandat 113.248 kb on - strandat 113.300 kb on + strandat 113.300 kb on + strandat 113.300 kb on + strandat 113.300 kb on + strandat 113.385 kb on - strandat 113.385 kb on - strandat 113.385 kb on - strandat 113.399 kb on + strandat 113.400 kb on - strandat 113.400 kb on - strandat 113.481 kb on + strand, within LRK53_RS18640at 113.482 kb on - strand, within LRK53_RS18640at 113.482 kb on - strand, within LRK53_RS18640at 113.570 kb on + strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.571 kb on - strand, within LRK53_RS18640at 113.762 kb on + strand, within LRK53_RS18640at 113.762 kb on + strand, within LRK53_RS18640at 113.763 kb on - strand, within LRK53_RS18640at 113.763 kb on - strand, within LRK53_RS18640at 113.763 kb on - strand, within LRK53_RS18640at 113.763 kb on - strand, within LRK53_RS18640at 113.763 kb on - strand, within LRK53_RS18640at 113.805 kb on - strand, within LRK53_RS18640at 113.805 kb on - strand, within LRK53_RS18640at 113.805 kb on - strand, within LRK53_RS18640

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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110,838 - LRK53_RS18630 0.42 -1.6
110,845 + LRK53_RS18630 0.42 -0.2
110,845 + LRK53_RS18630 0.42 -0.2
110,845 + LRK53_RS18630 0.42 -1.0
110,846 - LRK53_RS18630 0.42 -2.0
110,846 - LRK53_RS18630 0.42 -0.2
110,931 + LRK53_RS18630 0.47 +0.0
111,077 + LRK53_RS18630 0.55 +0.3
111,078 - LRK53_RS18630 0.56 +0.0
111,148 + LRK53_RS18630 0.60 -0.4
111,149 - LRK53_RS18630 0.60 -1.2
111,149 - LRK53_RS18630 0.60 -1.4
111,149 - LRK53_RS18630 0.60 -0.9
111,178 + LRK53_RS18630 0.61 -1.5
111,179 - LRK53_RS18630 0.61 -2.9
111,399 + LRK53_RS18630 0.74 +0.0
111,399 + LRK53_RS18630 0.74 +0.0
111,399 + LRK53_RS18630 0.74 -1.2
111,399 + LRK53_RS18630 0.74 -1.6
111,400 - LRK53_RS18630 0.74 -0.6
111,400 - LRK53_RS18630 0.74 +1.0
111,400 - LRK53_RS18630 0.74 -1.8
111,400 - LRK53_RS18630 0.74 -0.4
111,421 + LRK53_RS18630 0.76 -0.8
111,436 + LRK53_RS18630 0.76 -1.2
111,437 - LRK53_RS18630 0.76 -1.0
111,437 - LRK53_RS18630 0.76 -1.1
111,473 - LRK53_RS18630 0.79 -0.6
111,569 + LRK53_RS18630 0.84 +0.0
111,569 + LRK53_RS18630 0.84 -0.4
111,570 - LRK53_RS18630 0.84 -1.0
111,570 - LRK53_RS18630 0.84 -0.7
111,590 + LRK53_RS18630 0.85 +0.0
111,591 - LRK53_RS18630 0.85 -1.1
111,789 - +0.0
111,943 + LRK53_RS18635 0.10 +0.2
111,943 + LRK53_RS18635 0.10 +0.4
111,943 + LRK53_RS18635 0.10 +1.0
111,944 - LRK53_RS18635 0.10 -0.7
111,971 - LRK53_RS18635 0.13 -0.9
111,971 - LRK53_RS18635 0.13 -0.7
111,971 - LRK53_RS18635 0.13 -2.4
111,986 - LRK53_RS18635 0.15 -0.4
112,111 + LRK53_RS18635 0.27 -1.0
112,112 - LRK53_RS18635 0.27 -0.6
112,219 + LRK53_RS18635 0.37 -0.3
112,220 - LRK53_RS18635 0.38 -1.0
112,220 - LRK53_RS18635 0.38 -1.3
112,220 - LRK53_RS18635 0.38 -0.6
112,220 - LRK53_RS18635 0.38 -0.6
112,261 + LRK53_RS18635 0.42 +0.0
112,261 + LRK53_RS18635 0.42 +0.5
112,261 + LRK53_RS18635 0.42 +0.0
112,261 + LRK53_RS18635 0.42 -1.2
112,261 + LRK53_RS18635 0.42 -0.1
112,261 + LRK53_RS18635 0.42 +0.6
112,261 + LRK53_RS18635 0.42 +0.6
112,262 - LRK53_RS18635 0.42 -0.2
112,262 - LRK53_RS18635 0.42 +0.0
112,262 - LRK53_RS18635 0.42 -0.2
112,262 - LRK53_RS18635 0.42 -2.5
112,262 - LRK53_RS18635 0.42 -0.8
112,262 - LRK53_RS18635 0.42 -0.8
112,262 - LRK53_RS18635 0.42 -1.1
112,383 - LRK53_RS18635 0.54 -0.1
112,383 - LRK53_RS18635 0.54 -0.3
112,490 - LRK53_RS18635 0.64 -0.7
112,535 + LRK53_RS18635 0.68 +2.0
112,536 - LRK53_RS18635 0.69 +0.3
112,536 - LRK53_RS18635 0.69 -1.6
112,695 + LRK53_RS18635 0.84 -0.3
112,695 + LRK53_RS18635 0.84 +0.2
112,696 - LRK53_RS18635 0.84 +0.2
112,696 - LRK53_RS18635 0.84 -1.3
112,696 - LRK53_RS18635 0.84 -0.3
112,732 + LRK53_RS18635 0.88 -0.4
112,732 + LRK53_RS18635 0.88 -0.5
112,732 + LRK53_RS18635 0.88 -2.3
112,732 + LRK53_RS18635 0.88 +0.7
112,732 + LRK53_RS18635 0.88 -2.1
112,732 + LRK53_RS18635 0.88 -1.4
112,732 + LRK53_RS18635 0.88 -1.0
112,732 + LRK53_RS18635 0.88 +0.8
112,733 - LRK53_RS18635 0.88 +0.0
112,733 - LRK53_RS18635 0.88 -0.4
112,733 - LRK53_RS18635 0.88 -1.0
112,733 - LRK53_RS18635 0.88 -0.5
112,733 - LRK53_RS18635 0.88 +0.0
112,733 - LRK53_RS18635 0.88 -0.4
112,733 - LRK53_RS18635 0.88 +0.7
112,733 - LRK53_RS18635 0.88 -1.6
112,816 + +0.4
112,817 - -1.0
112,873 + +0.0
112,892 + -1.0
112,892 + -0.2
112,893 - -1.6
112,893 - +0.0
112,893 - -0.8
113,060 + -1.1
113,198 + -1.6
113,198 + +0.1
113,198 + -0.5
113,237 + +0.0
113,247 + -1.0
113,247 + +0.4
113,248 - +0.2
113,248 - -1.3
113,300 + -1.6
113,300 + -1.1
113,300 + -0.7
113,300 + +0.4
113,385 - -1.0
113,385 - -1.3
113,385 - -0.4
113,399 + +0.8
113,400 - -1.7
113,400 - +0.2
113,481 + LRK53_RS18640 0.11 -0.1
113,482 - LRK53_RS18640 0.11 -0.8
113,482 - LRK53_RS18640 0.11 -0.3
113,570 + LRK53_RS18640 0.14 +0.4
113,571 - LRK53_RS18640 0.14 +0.0
113,571 - LRK53_RS18640 0.14 +0.6
113,571 - LRK53_RS18640 0.14 -0.5
113,571 - LRK53_RS18640 0.14 +0.0
113,571 - LRK53_RS18640 0.14 -0.7
113,571 - LRK53_RS18640 0.14 -0.7
113,762 + LRK53_RS18640 0.20 -1.0
113,762 + LRK53_RS18640 0.20 -1.3
113,763 - LRK53_RS18640 0.20 -1.1
113,763 - LRK53_RS18640 0.20 -0.6
113,763 - LRK53_RS18640 0.20 -1.4
113,763 - LRK53_RS18640 0.20 -1.0
113,763 - LRK53_RS18640 0.20 -0.8
113,805 - LRK53_RS18640 0.22 -2.1
113,805 - LRK53_RS18640 0.22 -0.3
113,805 - LRK53_RS18640 0.22 +0.3

Or see this region's nucleotide sequence