Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14965

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14950 and LRK53_RS14955 overlap by 4 nucleotidesLRK53_RS14955 and LRK53_RS14960 are separated by 16 nucleotidesLRK53_RS14960 and LRK53_RS14965 overlap by 11 nucleotidesLRK53_RS14965 and LRK53_RS14970 are separated by 37 nucleotides LRK53_RS14950: LRK53_RS14950 - flagellar hook-length control protein FliK, at 3,270,305 to 3,271,447 _RS14950 LRK53_RS14955: LRK53_RS14955 - hypothetical protein, at 3,271,444 to 3,271,704 _RS14955 LRK53_RS14960: LRK53_RS14960 - DUF2802 domain-containing protein, at 3,271,721 to 3,272,068 _RS14960 LRK53_RS14965: LRK53_RS14965 - chemotaxis protein CheW, at 3,272,058 to 3,272,537 _RS14965 LRK53_RS14970: LRK53_RS14970 - flagellar motor protein MotD, at 3,272,575 to 3,273,585 _RS14970 Position (kb) 3272 3273Strain fitness (log2 ratio) -2 -1 0 1 2at 3271.275 kb on + strand, within LRK53_RS14950at 3271.275 kb on + strand, within LRK53_RS14950at 3271.362 kb on + strandat 3271.362 kb on + strandat 3271.362 kb on + strandat 3271.363 kb on - strandat 3271.363 kb on - strandat 3271.459 kb on + strandat 3271.652 kb on - strand, within LRK53_RS14955at 3271.684 kb on + strandat 3271.684 kb on + strandat 3271.685 kb on - strandat 3271.685 kb on - strandat 3271.839 kb on + strand, within LRK53_RS14960at 3271.839 kb on + strand, within LRK53_RS14960at 3271.840 kb on - strand, within LRK53_RS14960at 3271.840 kb on - strand, within LRK53_RS14960at 3272.376 kb on + strand, within LRK53_RS14965at 3272.377 kb on - strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.464 kb on + strand, within LRK53_RS14965at 3272.465 kb on - strand, within LRK53_RS14965at 3272.465 kb on - strand, within LRK53_RS14965at 3272.465 kb on - strand, within LRK53_RS14965at 3272.465 kb on - strand, within LRK53_RS14965at 3272.969 kb on + strand, within LRK53_RS14970at 3272.970 kb on - strand, within LRK53_RS14970at 3272.970 kb on - strand, within LRK53_RS14970at 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.485 kb on + strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.486 kb on - strandat 3273.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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3,271,275 + LRK53_RS14950 0.85 +0.1
3,271,275 + LRK53_RS14950 0.85 -1.7
3,271,362 + +0.4
3,271,362 + +1.0
3,271,362 + +1.0
3,271,363 - -1.6
3,271,363 - -0.2
3,271,459 + -0.4
3,271,652 - LRK53_RS14955 0.80 +1.0
3,271,684 + +1.0
3,271,684 + -1.0
3,271,685 - +0.4
3,271,685 - -0.6
3,271,839 + LRK53_RS14960 0.34 -0.0
3,271,839 + LRK53_RS14960 0.34 +1.0
3,271,840 - LRK53_RS14960 0.34 -0.7
3,271,840 - LRK53_RS14960 0.34 +0.6
3,272,376 + LRK53_RS14965 0.66 +1.0
3,272,377 - LRK53_RS14965 0.66 -1.0
3,272,464 + LRK53_RS14965 0.85 -1.6
3,272,464 + LRK53_RS14965 0.85 -1.8
3,272,464 + LRK53_RS14965 0.85 +2.0
3,272,464 + LRK53_RS14965 0.85 +0.4
3,272,464 + LRK53_RS14965 0.85 +0.4
3,272,464 + LRK53_RS14965 0.85 -1.7
3,272,464 + LRK53_RS14965 0.85 -0.6
3,272,464 + LRK53_RS14965 0.85 -0.6
3,272,464 + LRK53_RS14965 0.85 +2.0
3,272,464 + LRK53_RS14965 0.85 -1.5
3,272,464 + LRK53_RS14965 0.85 -0.6
3,272,464 + LRK53_RS14965 0.85 -0.0
3,272,464 + LRK53_RS14965 0.85 -0.7
3,272,464 + LRK53_RS14965 0.85 -1.0
3,272,465 - LRK53_RS14965 0.85 -0.0
3,272,465 - LRK53_RS14965 0.85 -2.6
3,272,465 - LRK53_RS14965 0.85 +1.0
3,272,465 - LRK53_RS14965 0.85 -0.3
3,272,969 + LRK53_RS14970 0.39 -1.0
3,272,970 - LRK53_RS14970 0.39 -0.6
3,272,970 - LRK53_RS14970 0.39 -1.6
3,273,485 + +0.2
3,273,485 + -1.8
3,273,485 + -0.0
3,273,485 + -0.0
3,273,485 + -0.3
3,273,485 + +0.4
3,273,485 + -1.0
3,273,486 - -0.2
3,273,486 - -0.2
3,273,486 - -1.8
3,273,486 - -2.2
3,273,486 - -0.1
3,273,486 - -1.5
3,273,486 - -0.2
3,273,530 + -0.3

Or see this region's nucleotide sequence