Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11780 and LRK53_RS11785 are separated by 12 nucleotides LRK53_RS11785 and LRK53_RS11790 overlap by 4 nucleotides LRK53_RS11790 and LRK53_RS11795 overlap by 4 nucleotides LRK53_RS11795 and LRK53_RS11800 overlap by 17 nucleotides
LRK53_RS11780: LRK53_RS11780 - cytochrome-c oxidase, cbb3-type subunit I, at 2,625,247 to 2,626,713
_RS11780
LRK53_RS11785: LRK53_RS11785 - cytochrome-c oxidase, cbb3-type subunit II, at 2,626,726 to 2,627,376
_RS11785
LRK53_RS11790: LRK53_RS11790 - cbb3-type cytochrome c oxidase subunit 3, at 2,627,373 to 2,627,555
_RS11790
LRK53_RS11795: LRK53_RS11795 - cytochrome-c oxidase, cbb3-type subunit III, at 2,627,552 to 2,628,460
_RS11795
LRK53_RS11800: LRK53_RS11800 - hypothetical protein, at 2,628,444 to 2,628,680
_RS11800
Position (kb)
2627
2628 Strain fitness (log2 ratio)
-2
-1
0
1 at 2626.732 kb on + strand at 2626.732 kb on + strand at 2626.733 kb on - strand at 2626.910 kb on - strand, within LRK53_RS11785 at 2626.927 kb on + strand, within LRK53_RS11785 at 2627.012 kb on - strand, within LRK53_RS11785 at 2627.078 kb on - strand, within LRK53_RS11785 at 2627.447 kb on + strand, within LRK53_RS11790 at 2627.448 kb on - strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.472 kb on + strand, within LRK53_RS11790 at 2627.622 kb on - strand at 2627.772 kb on - strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.297 kb on + strand, within LRK53_RS11795 at 2628.298 kb on - strand, within LRK53_RS11795 at 2628.298 kb on - strand, within LRK53_RS11795 at 2628.416 kb on + strand at 2628.422 kb on + strand at 2628.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM remove 2,626,732 + -0.0 2,626,732 + -1.8 2,626,733 - +1.0 2,626,910 - LRK53_RS11785 0.28 -0.0 2,626,927 + LRK53_RS11785 0.31 +1.0 2,627,012 - LRK53_RS11785 0.44 +1.0 2,627,078 - LRK53_RS11785 0.54 -0.0 2,627,447 + LRK53_RS11790 0.40 -1.0 2,627,448 - LRK53_RS11790 0.41 -1.6 2,627,472 + LRK53_RS11790 0.54 -0.6 2,627,472 + LRK53_RS11790 0.54 -0.0 2,627,472 + LRK53_RS11790 0.54 -0.6 2,627,472 + LRK53_RS11790 0.54 -1.8 2,627,472 + LRK53_RS11790 0.54 +1.0 2,627,472 + LRK53_RS11790 0.54 -0.6 2,627,472 + LRK53_RS11790 0.54 -0.0 2,627,622 - +1.0 2,627,772 - LRK53_RS11795 0.24 +1.0 2,628,297 + LRK53_RS11795 0.82 -0.0 2,628,297 + LRK53_RS11795 0.82 +1.0 2,628,297 + LRK53_RS11795 0.82 +1.0 2,628,297 + LRK53_RS11795 0.82 +1.0 2,628,297 + LRK53_RS11795 0.82 -0.0 2,628,297 + LRK53_RS11795 0.82 +1.0 2,628,297 + LRK53_RS11795 0.82 -0.6 2,628,297 + LRK53_RS11795 0.82 -0.0 2,628,298 - LRK53_RS11795 0.82 +1.0 2,628,298 - LRK53_RS11795 0.82 -0.0 2,628,416 + +1.0 2,628,422 + -0.0 2,628,423 - -0.0
Or see this region's nucleotide sequence