Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05015

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05010 and LRK53_RS05015 are separated by 332 nucleotidesLRK53_RS05015 and LRK53_RS05020 are separated by 3 nucleotides LRK53_RS05010: LRK53_RS05010 - beta-phosphoglucomutase, at 1,178,764 to 1,181,787 _RS05010 LRK53_RS05015: LRK53_RS05015 - LacI family DNA-binding transcriptional regulator, at 1,182,120 to 1,183,124 _RS05015 LRK53_RS05020: LRK53_RS05020 - HAMP domain-containing histidine kinase, at 1,183,128 to 1,184,777 _RS05020 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1181.264 kb on + strand, within LRK53_RS05010at 1181.514 kb on + strandat 1181.514 kb on + strandat 1181.514 kb on + strandat 1181.515 kb on - strandat 1181.515 kb on - strandat 1181.546 kb on + strandat 1181.547 kb on - strandat 1181.547 kb on - strandat 1181.774 kb on + strandat 1181.774 kb on + strandat 1181.774 kb on + strandat 1181.774 kb on + strandat 1181.774 kb on + strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.775 kb on - strandat 1181.883 kb on - strandat 1181.883 kb on - strandat 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.288 kb on + strand, within LRK53_RS05015at 1182.289 kb on - strand, within LRK53_RS05015at 1182.289 kb on - strand, within LRK53_RS05015at 1182.289 kb on - strand, within LRK53_RS05015at 1182.289 kb on - strand, within LRK53_RS05015at 1182.289 kb on - strand, within LRK53_RS05015at 1182.335 kb on + strand, within LRK53_RS05015at 1182.335 kb on + strand, within LRK53_RS05015at 1182.346 kb on + strand, within LRK53_RS05015at 1182.349 kb on + strand, within LRK53_RS05015at 1182.350 kb on - strand, within LRK53_RS05015at 1182.350 kb on - strand, within LRK53_RS05015at 1182.350 kb on - strand, within LRK53_RS05015at 1182.350 kb on - strand, within LRK53_RS05015at 1182.957 kb on + strand, within LRK53_RS05015at 1182.958 kb on - strand, within LRK53_RS05015at 1182.958 kb on - strand, within LRK53_RS05015at 1182.958 kb on - strand, within LRK53_RS05015at 1182.958 kb on - strand, within LRK53_RS05015at 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.234 kb on + strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.235 kb on - strandat 1183.279 kb on + strandat 1183.279 kb on + strandat 1183.279 kb on + strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.280 kb on - strandat 1183.300 kb on + strand, within LRK53_RS05020at 1183.300 kb on + strand, within LRK53_RS05020at 1183.301 kb on - strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.315 kb on + strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.316 kb on - strand, within LRK53_RS05020at 1183.390 kb on - strand, within LRK53_RS05020at 1183.390 kb on - strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.585 kb on + strand, within LRK53_RS05020at 1183.586 kb on - strand, within LRK53_RS05020at 1183.586 kb on - strand, within LRK53_RS05020at 1183.586 kb on - strand, within LRK53_RS05020at 1183.586 kb on - strand, within LRK53_RS05020at 1183.656 kb on + strand, within LRK53_RS05020at 1184.011 kb on + strand, within LRK53_RS05020at 1184.011 kb on + strand, within LRK53_RS05020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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1,181,264 + LRK53_RS05010 0.83 -0.6
1,181,514 + +0.2
1,181,514 + -1.3
1,181,514 + -1.4
1,181,515 - -2.0
1,181,515 - +0.3
1,181,546 + -1.0
1,181,547 - -0.4
1,181,547 - -0.3
1,181,774 + +0.4
1,181,774 + -0.5
1,181,774 + +0.1
1,181,774 + -0.6
1,181,774 + +0.6
1,181,775 - -1.0
1,181,775 - +0.4
1,181,775 - -0.8
1,181,775 - -1.4
1,181,775 - -0.0
1,181,775 - +0.5
1,181,775 - -0.2
1,181,775 - -0.3
1,181,775 - -2.5
1,181,775 - -0.6
1,181,775 - -0.0
1,181,775 - -1.2
1,181,775 - -0.5
1,181,883 - -2.1
1,181,883 - -0.4
1,182,288 + LRK53_RS05015 0.17 -1.0
1,182,288 + LRK53_RS05015 0.17 -2.4
1,182,288 + LRK53_RS05015 0.17 -1.1
1,182,288 + LRK53_RS05015 0.17 +1.0
1,182,288 + LRK53_RS05015 0.17 -0.8
1,182,288 + LRK53_RS05015 0.17 -0.6
1,182,288 + LRK53_RS05015 0.17 +1.0
1,182,289 - LRK53_RS05015 0.17 -0.4
1,182,289 - LRK53_RS05015 0.17 -0.0
1,182,289 - LRK53_RS05015 0.17 -1.8
1,182,289 - LRK53_RS05015 0.17 -1.0
1,182,289 - LRK53_RS05015 0.17 -1.0
1,182,335 + LRK53_RS05015 0.21 -1.4
1,182,335 + LRK53_RS05015 0.21 -0.0
1,182,346 + LRK53_RS05015 0.22 +0.4
1,182,349 + LRK53_RS05015 0.23 -0.0
1,182,350 - LRK53_RS05015 0.23 -1.4
1,182,350 - LRK53_RS05015 0.23 -1.2
1,182,350 - LRK53_RS05015 0.23 -1.5
1,182,350 - LRK53_RS05015 0.23 -1.0
1,182,957 + LRK53_RS05015 0.83 -0.4
1,182,958 - LRK53_RS05015 0.83 -0.0
1,182,958 - LRK53_RS05015 0.83 -0.6
1,182,958 - LRK53_RS05015 0.83 -0.0
1,182,958 - LRK53_RS05015 0.83 +0.2
1,183,234 + -0.0
1,183,234 + -1.0
1,183,234 + -0.5
1,183,234 + +1.0
1,183,234 + -1.0
1,183,234 + -2.0
1,183,234 + -1.0
1,183,234 + -1.5
1,183,234 + -1.4
1,183,234 + +0.4
1,183,234 + -0.6
1,183,234 + -0.4
1,183,234 + +0.3
1,183,235 - +1.0
1,183,235 - -0.5
1,183,235 - -2.0
1,183,235 - -1.0
1,183,235 - +1.0
1,183,235 - -0.6
1,183,235 - -2.0
1,183,279 + +0.3
1,183,279 + -0.6
1,183,279 + +3.3
1,183,280 - -0.6
1,183,280 - -0.0
1,183,280 - -0.0
1,183,280 - +1.0
1,183,280 - +2.0
1,183,280 - -0.6
1,183,280 - -0.2
1,183,280 - -0.0
1,183,300 + LRK53_RS05020 0.10 -1.9
1,183,300 + LRK53_RS05020 0.10 +0.4
1,183,301 - LRK53_RS05020 0.10 -1.0
1,183,315 + LRK53_RS05020 0.11 -0.0
1,183,315 + LRK53_RS05020 0.11 -0.0
1,183,315 + LRK53_RS05020 0.11 -1.0
1,183,315 + LRK53_RS05020 0.11 +2.0
1,183,315 + LRK53_RS05020 0.11 -0.0
1,183,315 + LRK53_RS05020 0.11 +0.4
1,183,315 + LRK53_RS05020 0.11 +1.0
1,183,315 + LRK53_RS05020 0.11 -1.2
1,183,315 + LRK53_RS05020 0.11 +2.6
1,183,315 + LRK53_RS05020 0.11 -0.4
1,183,316 - LRK53_RS05020 0.11 +2.0
1,183,316 - LRK53_RS05020 0.11 -1.8
1,183,316 - LRK53_RS05020 0.11 +2.6
1,183,316 - LRK53_RS05020 0.11 +0.4
1,183,316 - LRK53_RS05020 0.11 +1.5
1,183,316 - LRK53_RS05020 0.11 -1.4
1,183,390 - LRK53_RS05020 0.16 -1.4
1,183,390 - LRK53_RS05020 0.16 +0.6
1,183,585 + LRK53_RS05020 0.28 -0.9
1,183,585 + LRK53_RS05020 0.28 -1.0
1,183,585 + LRK53_RS05020 0.28 -1.6
1,183,585 + LRK53_RS05020 0.28 +1.0
1,183,585 + LRK53_RS05020 0.28 +1.0
1,183,585 + LRK53_RS05020 0.28 -2.0
1,183,585 + LRK53_RS05020 0.28 +0.4
1,183,586 - LRK53_RS05020 0.28 -1.6
1,183,586 - LRK53_RS05020 0.28 +0.4
1,183,586 - LRK53_RS05020 0.28 +1.0
1,183,586 - LRK53_RS05020 0.28 -1.1
1,183,656 + LRK53_RS05020 0.32 -1.8
1,184,011 + LRK53_RS05020 0.54 -0.3
1,184,011 + LRK53_RS05020 0.54 -0.6

Or see this region's nucleotide sequence