Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03065

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03060 and LRK53_RS03065 are separated by 290 nucleotidesLRK53_RS03065 and LRK53_RS03070 are separated by 244 nucleotides LRK53_RS03060: LRK53_RS03060 - TonB-dependent receptor, at 711,869 to 714,382 _RS03060 LRK53_RS03065: LRK53_RS03065 - 4-hydroxybenzoate octaprenyltransferase, at 714,673 to 715,602 _RS03065 LRK53_RS03070: LRK53_RS03070 - GGDEF domain-containing protein, at 715,847 to 716,983 _RS03070 Position (kb) 714 715 716Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 713.712 kb on + strand, within LRK53_RS03060at 713.712 kb on + strand, within LRK53_RS03060at 713.713 kb on - strand, within LRK53_RS03060at 713.760 kb on + strand, within LRK53_RS03060at 713.761 kb on - strand, within LRK53_RS03060at 713.761 kb on - strand, within LRK53_RS03060at 713.788 kb on - strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.802 kb on + strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.803 kb on - strand, within LRK53_RS03060at 713.877 kb on + strand, within LRK53_RS03060at 713.877 kb on + strand, within LRK53_RS03060at 713.877 kb on + strand, within LRK53_RS03060at 713.878 kb on - strand, within LRK53_RS03060at 713.878 kb on - strand, within LRK53_RS03060at 713.961 kb on + strand, within LRK53_RS03060at 713.962 kb on - strand, within LRK53_RS03060at 714.174 kb on + strandat 714.174 kb on + strandat 714.175 kb on - strandat 714.175 kb on - strandat 714.175 kb on - strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.376 kb on + strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 714.377 kb on - strandat 715.509 kb on - strand, within LRK53_RS03065at 715.711 kb on - strandat 715.711 kb on - strandat 715.771 kb on - strandat 715.856 kb on + strandat 715.857 kb on - strandat 716.147 kb on + strand, within LRK53_RS03070at 716.148 kb on - strand, within LRK53_RS03070at 716.148 kb on - strand, within LRK53_RS03070at 716.366 kb on + strand, within LRK53_RS03070at 716.366 kb on + strand, within LRK53_RS03070at 716.367 kb on - strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.588 kb on - strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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713,712 + LRK53_RS03060 0.73 -0.6
713,712 + LRK53_RS03060 0.73 -0.4
713,713 - LRK53_RS03060 0.73 -0.3
713,760 + LRK53_RS03060 0.75 +0.2
713,761 - LRK53_RS03060 0.75 -0.3
713,761 - LRK53_RS03060 0.75 +1.5
713,788 - LRK53_RS03060 0.76 -1.0
713,802 + LRK53_RS03060 0.77 -1.6
713,802 + LRK53_RS03060 0.77 -1.2
713,802 + LRK53_RS03060 0.77 -0.6
713,802 + LRK53_RS03060 0.77 -1.9
713,802 + LRK53_RS03060 0.77 +1.4
713,802 + LRK53_RS03060 0.77 +2.0
713,802 + LRK53_RS03060 0.77 -0.6
713,802 + LRK53_RS03060 0.77 -0.7
713,803 - LRK53_RS03060 0.77 -0.6
713,803 - LRK53_RS03060 0.77 -1.8
713,803 - LRK53_RS03060 0.77 +0.4
713,803 - LRK53_RS03060 0.77 -0.8
713,803 - LRK53_RS03060 0.77 -0.0
713,803 - LRK53_RS03060 0.77 +2.0
713,803 - LRK53_RS03060 0.77 -0.0
713,803 - LRK53_RS03060 0.77 +2.0
713,803 - LRK53_RS03060 0.77 -1.8
713,803 - LRK53_RS03060 0.77 -0.6
713,803 - LRK53_RS03060 0.77 -0.6
713,803 - LRK53_RS03060 0.77 -0.6
713,877 + LRK53_RS03060 0.80 +1.0
713,877 + LRK53_RS03060 0.80 -1.7
713,877 + LRK53_RS03060 0.80 -1.4
713,878 - LRK53_RS03060 0.80 -0.6
713,878 - LRK53_RS03060 0.80 -0.0
713,961 + LRK53_RS03060 0.83 +0.2
713,962 - LRK53_RS03060 0.83 -0.8
714,174 + -0.6
714,174 + -0.6
714,175 - -0.6
714,175 - -0.0
714,175 - -0.0
714,376 + -0.7
714,376 + -0.6
714,376 + -1.4
714,376 + -1.6
714,376 + -1.0
714,376 + -1.0
714,376 + -0.6
714,376 + +0.4
714,376 + -0.4
714,376 + -1.5
714,376 + +1.8
714,376 + -1.6
714,376 + -2.8
714,376 + -1.0
714,376 + -2.5
714,376 + -1.5
714,377 - +1.0
714,377 - +0.2
714,377 - -1.6
714,377 - +1.0
714,377 - -0.6
714,377 - -1.4
714,377 - +0.4
714,377 - -0.0
714,377 - -0.6
714,377 - -1.1
714,377 - -0.6
714,377 - -0.6
714,377 - -1.7
714,377 - -0.6
714,377 - -0.6
715,509 - LRK53_RS03065 0.90 -2.2
715,711 - -0.0
715,711 - -1.4
715,771 - +1.0
715,856 + -0.0
715,857 - +0.1
716,147 + LRK53_RS03070 0.26 -2.7
716,148 - LRK53_RS03070 0.26 -0.8
716,148 - LRK53_RS03070 0.26 -1.2
716,366 + LRK53_RS03070 0.46 -0.0
716,366 + LRK53_RS03070 0.46 -0.4
716,367 - LRK53_RS03070 0.46 +0.1
716,375 + LRK53_RS03070 0.46 -1.9
716,375 + LRK53_RS03070 0.46 -1.0
716,375 + LRK53_RS03070 0.46 +1.4
716,375 + LRK53_RS03070 0.46 -2.3
716,375 + LRK53_RS03070 0.46 +1.0
716,375 + LRK53_RS03070 0.46 +0.4
716,375 + LRK53_RS03070 0.46 -0.0
716,375 + LRK53_RS03070 0.46 -0.0
716,375 + LRK53_RS03070 0.46 -0.4
716,375 + LRK53_RS03070 0.46 -1.0
716,375 + LRK53_RS03070 0.46 -1.3
716,376 - LRK53_RS03070 0.47 -0.8
716,376 - LRK53_RS03070 0.47 -1.8
716,376 - LRK53_RS03070 0.47 +0.7
716,376 - LRK53_RS03070 0.47 +1.0
716,376 - LRK53_RS03070 0.47 +0.2
716,423 + LRK53_RS03070 0.51 -1.1
716,423 + LRK53_RS03070 0.51 -1.5
716,423 + LRK53_RS03070 0.51 -1.8
716,424 - LRK53_RS03070 0.51 +2.5
716,424 - LRK53_RS03070 0.51 -0.0
716,587 + LRK53_RS03070 0.65 -1.4
716,587 + LRK53_RS03070 0.65 +0.3
716,587 + LRK53_RS03070 0.65 +0.4
716,587 + LRK53_RS03070 0.65 +1.7
716,588 - LRK53_RS03070 0.65 -1.5
716,591 + LRK53_RS03070 0.65 -0.0
716,591 + LRK53_RS03070 0.65 +2.0
716,591 + LRK53_RS03070 0.65 +1.0
716,591 + LRK53_RS03070 0.65 +0.4
716,591 + LRK53_RS03070 0.65 -0.5
716,591 + LRK53_RS03070 0.65 +1.0
716,592 - LRK53_RS03070 0.66 +1.0
716,592 - LRK53_RS03070 0.66 -0.2
716,592 - LRK53_RS03070 0.66 -0.6
716,592 - LRK53_RS03070 0.66 -1.0
716,592 - LRK53_RS03070 0.66 -0.5

Or see this region's nucleotide sequence