Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03050

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03045 and LRK53_RS03050 are separated by 147 nucleotidesLRK53_RS03050 and LRK53_RS03055 overlap by 20 nucleotides LRK53_RS03045: LRK53_RS03045 - multicopper oxidase domain-containing protein, at 707,319 to 709,298 _RS03045 LRK53_RS03050: LRK53_RS03050 - ComF family protein, at 709,446 to 710,180 _RS03050 LRK53_RS03055: LRK53_RS03055 - CehA/McbA family metallohydrolase, at 710,161 to 711,720 _RS03055 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2at 708.472 kb on + strand, within LRK53_RS03045at 708.472 kb on + strand, within LRK53_RS03045at 708.473 kb on - strand, within LRK53_RS03045at 708.473 kb on - strand, within LRK53_RS03045at 708.473 kb on - strand, within LRK53_RS03045at 708.473 kb on - strand, within LRK53_RS03045at 708.473 kb on - strand, within LRK53_RS03045at 708.817 kb on + strand, within LRK53_RS03045at 708.817 kb on + strand, within LRK53_RS03045at 708.817 kb on + strand, within LRK53_RS03045at 708.817 kb on + strand, within LRK53_RS03045at 708.817 kb on + strand, within LRK53_RS03045at 708.818 kb on - strand, within LRK53_RS03045at 708.818 kb on - strand, within LRK53_RS03045at 708.829 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.886 kb on + strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.887 kb on - strand, within LRK53_RS03045at 708.925 kb on + strand, within LRK53_RS03045at 708.925 kb on + strand, within LRK53_RS03045at 708.988 kb on + strand, within LRK53_RS03045at 708.988 kb on + strand, within LRK53_RS03045at 708.988 kb on + strand, within LRK53_RS03045at 708.988 kb on + strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 708.989 kb on - strand, within LRK53_RS03045at 709.153 kb on + strandat 709.153 kb on + strandat 709.154 kb on - strandat 709.154 kb on - strandat 709.154 kb on - strandat 709.154 kb on - strandat 709.162 kb on + strandat 709.162 kb on + strandat 709.162 kb on + strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.163 kb on - strandat 709.278 kb on - strandat 709.278 kb on - strandat 709.291 kb on - strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.367 kb on + strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.368 kb on - strandat 709.378 kb on + strandat 709.379 kb on - strandat 709.395 kb on - strandat 709.395 kb on - strandat 709.395 kb on - strandat 709.416 kb on + strandat 709.417 kb on - strandat 709.725 kb on + strand, within LRK53_RS03050at 709.725 kb on + strand, within LRK53_RS03050at 709.726 kb on - strand, within LRK53_RS03050at 709.726 kb on - strand, within LRK53_RS03050at 709.857 kb on + strand, within LRK53_RS03050at 709.858 kb on - strand, within LRK53_RS03050at 710.183 kb on + strandat 710.184 kb on - strandat 710.184 kb on - strandat 710.184 kb on - strandat 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.344 kb on + strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.345 kb on - strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.347 kb on + strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.348 kb on - strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.743 kb on + strand, within LRK53_RS03055at 710.744 kb on - strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.993 kb on + strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 710.994 kb on - strand, within LRK53_RS03055at 711.179 kb on + strand, within LRK53_RS03055

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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708,472 + LRK53_RS03045 0.58 -0.9
708,472 + LRK53_RS03045 0.58 -0.6
708,473 - LRK53_RS03045 0.58 +0.7
708,473 - LRK53_RS03045 0.58 -0.5
708,473 - LRK53_RS03045 0.58 +0.4
708,473 - LRK53_RS03045 0.58 -0.9
708,473 - LRK53_RS03045 0.58 -1.8
708,817 + LRK53_RS03045 0.76 -1.4
708,817 + LRK53_RS03045 0.76 -1.7
708,817 + LRK53_RS03045 0.76 -1.8
708,817 + LRK53_RS03045 0.76 +0.2
708,817 + LRK53_RS03045 0.76 -0.6
708,818 - LRK53_RS03045 0.76 -0.4
708,818 - LRK53_RS03045 0.76 -0.0
708,829 + LRK53_RS03045 0.76 +0.5
708,886 + LRK53_RS03045 0.79 -1.5
708,886 + LRK53_RS03045 0.79 +0.4
708,886 + LRK53_RS03045 0.79 -0.6
708,886 + LRK53_RS03045 0.79 -1.4
708,886 + LRK53_RS03045 0.79 -0.3
708,886 + LRK53_RS03045 0.79 +1.0
708,886 + LRK53_RS03045 0.79 -0.5
708,886 + LRK53_RS03045 0.79 -0.2
708,886 + LRK53_RS03045 0.79 -1.4
708,886 + LRK53_RS03045 0.79 -2.0
708,886 + LRK53_RS03045 0.79 +0.2
708,886 + LRK53_RS03045 0.79 -0.8
708,886 + LRK53_RS03045 0.79 -2.0
708,886 + LRK53_RS03045 0.79 +0.4
708,886 + LRK53_RS03045 0.79 +0.2
708,886 + LRK53_RS03045 0.79 -1.6
708,886 + LRK53_RS03045 0.79 -1.8
708,886 + LRK53_RS03045 0.79 -1.0
708,886 + LRK53_RS03045 0.79 -0.6
708,886 + LRK53_RS03045 0.79 -1.4
708,886 + LRK53_RS03045 0.79 -1.0
708,886 + LRK53_RS03045 0.79 -1.2
708,886 + LRK53_RS03045 0.79 -1.6
708,886 + LRK53_RS03045 0.79 -0.0
708,886 + LRK53_RS03045 0.79 -1.0
708,886 + LRK53_RS03045 0.79 +0.4
708,886 + LRK53_RS03045 0.79 -0.6
708,886 + LRK53_RS03045 0.79 +0.2
708,887 - LRK53_RS03045 0.79 +0.2
708,887 - LRK53_RS03045 0.79 +1.0
708,887 - LRK53_RS03045 0.79 -0.0
708,887 - LRK53_RS03045 0.79 -0.2
708,887 - LRK53_RS03045 0.79 +1.5
708,887 - LRK53_RS03045 0.79 +1.0
708,887 - LRK53_RS03045 0.79 +1.0
708,887 - LRK53_RS03045 0.79 -0.6
708,887 - LRK53_RS03045 0.79 -0.6
708,887 - LRK53_RS03045 0.79 +1.0
708,887 - LRK53_RS03045 0.79 -0.9
708,887 - LRK53_RS03045 0.79 -1.4
708,887 - LRK53_RS03045 0.79 -1.0
708,887 - LRK53_RS03045 0.79 +0.2
708,887 - LRK53_RS03045 0.79 -1.6
708,887 - LRK53_RS03045 0.79 -0.0
708,887 - LRK53_RS03045 0.79 -1.4
708,887 - LRK53_RS03045 0.79 -0.0
708,887 - LRK53_RS03045 0.79 -0.6
708,887 - LRK53_RS03045 0.79 -0.0
708,887 - LRK53_RS03045 0.79 -0.0
708,887 - LRK53_RS03045 0.79 +0.4
708,887 - LRK53_RS03045 0.79 -0.6
708,887 - LRK53_RS03045 0.79 +2.0
708,925 + LRK53_RS03045 0.81 -2.0
708,925 + LRK53_RS03045 0.81 -1.0
708,988 + LRK53_RS03045 0.84 -0.8
708,988 + LRK53_RS03045 0.84 -1.3
708,988 + LRK53_RS03045 0.84 +1.5
708,988 + LRK53_RS03045 0.84 +1.0
708,989 - LRK53_RS03045 0.84 -0.3
708,989 - LRK53_RS03045 0.84 -0.2
708,989 - LRK53_RS03045 0.84 -1.9
708,989 - LRK53_RS03045 0.84 -0.8
708,989 - LRK53_RS03045 0.84 -0.4
708,989 - LRK53_RS03045 0.84 +0.1
708,989 - LRK53_RS03045 0.84 +2.0
708,989 - LRK53_RS03045 0.84 +1.5
708,989 - LRK53_RS03045 0.84 -1.8
708,989 - LRK53_RS03045 0.84 +1.0
708,989 - LRK53_RS03045 0.84 +0.3
709,153 + -1.0
709,153 + +0.4
709,154 - +1.0
709,154 - -0.6
709,154 - -1.6
709,154 - -1.0
709,162 + -0.5
709,162 + -1.7
709,162 + +1.0
709,163 - -1.0
709,163 - -1.0
709,163 - +0.1
709,163 - -0.4
709,163 - -1.8
709,163 - -1.8
709,163 - -0.6
709,163 - -1.2
709,163 - -1.0
709,163 - -0.6
709,278 - -2.7
709,278 - -0.4
709,291 - -1.3
709,367 + -0.2
709,367 + -1.0
709,367 + +0.8
709,367 + +0.2
709,367 + -0.0
709,367 + +0.5
709,367 + +1.2
709,367 + -1.9
709,367 + -2.2
709,367 + -1.2
709,367 + -0.8
709,367 + +0.5
709,367 + -0.6
709,367 + -0.4
709,367 + -1.4
709,367 + -0.0
709,367 + -0.1
709,367 + +2.0
709,367 + +0.5
709,367 + +1.0
709,367 + -0.2
709,367 + -0.0
709,368 - -1.4
709,368 - -0.8
709,368 - -2.5
709,368 - -0.2
709,368 - -1.3
709,368 - -1.4
709,368 - -1.7
709,368 - +2.5
709,368 - +1.5
709,368 - -1.3
709,368 - -1.0
709,368 - +1.0
709,378 + -1.0
709,379 - -1.8
709,395 - +1.4
709,395 - +0.5
709,395 - +0.3
709,416 + -1.0
709,417 - -0.5
709,725 + LRK53_RS03050 0.38 -1.2
709,725 + LRK53_RS03050 0.38 -1.8
709,726 - LRK53_RS03050 0.38 -0.8
709,726 - LRK53_RS03050 0.38 -1.0
709,857 + LRK53_RS03050 0.56 -1.6
709,858 - LRK53_RS03050 0.56 -0.8
710,183 + -1.4
710,184 - -1.0
710,184 - -1.6
710,184 - -0.6
710,344 + LRK53_RS03055 0.12 -0.0
710,344 + LRK53_RS03055 0.12 -0.5
710,344 + LRK53_RS03055 0.12 -1.0
710,344 + LRK53_RS03055 0.12 -0.0
710,344 + LRK53_RS03055 0.12 -2.0
710,344 + LRK53_RS03055 0.12 +1.0
710,344 + LRK53_RS03055 0.12 -0.4
710,344 + LRK53_RS03055 0.12 -1.4
710,344 + LRK53_RS03055 0.12 +0.1
710,344 + LRK53_RS03055 0.12 +1.0
710,345 - LRK53_RS03055 0.12 -1.0
710,345 - LRK53_RS03055 0.12 +1.0
710,345 - LRK53_RS03055 0.12 +1.0
710,345 - LRK53_RS03055 0.12 +1.0
710,345 - LRK53_RS03055 0.12 -1.6
710,345 - LRK53_RS03055 0.12 +0.4
710,345 - LRK53_RS03055 0.12 -2.2
710,347 + LRK53_RS03055 0.12 -1.8
710,347 + LRK53_RS03055 0.12 -2.0
710,347 + LRK53_RS03055 0.12 +1.0
710,347 + LRK53_RS03055 0.12 -1.0
710,347 + LRK53_RS03055 0.12 -1.4
710,347 + LRK53_RS03055 0.12 -1.5
710,347 + LRK53_RS03055 0.12 -1.0
710,347 + LRK53_RS03055 0.12 -0.8
710,347 + LRK53_RS03055 0.12 +0.6
710,347 + LRK53_RS03055 0.12 +0.3
710,348 - LRK53_RS03055 0.12 -0.6
710,348 - LRK53_RS03055 0.12 -0.0
710,348 - LRK53_RS03055 0.12 +0.6
710,348 - LRK53_RS03055 0.12 -0.0
710,348 - LRK53_RS03055 0.12 +0.2
710,348 - LRK53_RS03055 0.12 -0.2
710,348 - LRK53_RS03055 0.12 -1.7
710,743 + LRK53_RS03055 0.37 +0.5
710,743 + LRK53_RS03055 0.37 +1.5
710,743 + LRK53_RS03055 0.37 -2.2
710,743 + LRK53_RS03055 0.37 +0.4
710,743 + LRK53_RS03055 0.37 +1.0
710,743 + LRK53_RS03055 0.37 -1.0
710,743 + LRK53_RS03055 0.37 -1.0
710,743 + LRK53_RS03055 0.37 -0.0
710,743 + LRK53_RS03055 0.37 +0.4
710,744 - LRK53_RS03055 0.37 -0.6
710,993 + LRK53_RS03055 0.53 -0.3
710,993 + LRK53_RS03055 0.53 -0.8
710,993 + LRK53_RS03055 0.53 -0.9
710,993 + LRK53_RS03055 0.53 +0.7
710,993 + LRK53_RS03055 0.53 -0.6
710,993 + LRK53_RS03055 0.53 -0.2
710,993 + LRK53_RS03055 0.53 +1.3
710,993 + LRK53_RS03055 0.53 -1.6
710,994 - LRK53_RS03055 0.53 -0.1
710,994 - LRK53_RS03055 0.53 -1.0
710,994 - LRK53_RS03055 0.53 -0.6
710,994 - LRK53_RS03055 0.53 -1.8
710,994 - LRK53_RS03055 0.53 -1.6
710,994 - LRK53_RS03055 0.53 -0.0
710,994 - LRK53_RS03055 0.53 -0.5
710,994 - LRK53_RS03055 0.53 -0.9
710,994 - LRK53_RS03055 0.53 -0.7
710,994 - LRK53_RS03055 0.53 +1.0
711,179 + LRK53_RS03055 0.65 -0.0

Or see this region's nucleotide sequence