Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02785

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02780 and LRK53_RS02785 are separated by 63 nucleotidesLRK53_RS02785 and LRK53_RS02790 are separated by 63 nucleotides LRK53_RS02780: LRK53_RS02780 - type II secretion system secretin GspD, at 637,021 to 639,351 _RS02780 LRK53_RS02785: LRK53_RS02785 - ATP-dependent helicase HrpB, at 639,415 to 642,159 _RS02785 LRK53_RS02790: LRK53_RS02790 - EAL domain-containing protein, at 642,223 to 644,922 _RS02790 Position (kb) 639 640 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2 3at 638.587 kb on + strand, within LRK53_RS02780at 638.587 kb on + strand, within LRK53_RS02780at 638.587 kb on + strand, within LRK53_RS02780at 638.587 kb on + strand, within LRK53_RS02780at 638.587 kb on + strand, within LRK53_RS02780at 638.588 kb on - strand, within LRK53_RS02780at 638.588 kb on - strand, within LRK53_RS02780at 638.588 kb on - strand, within LRK53_RS02780at 638.588 kb on - strand, within LRK53_RS02780at 638.588 kb on - strand, within LRK53_RS02780at 638.716 kb on + strand, within LRK53_RS02780at 638.716 kb on + strand, within LRK53_RS02780at 638.717 kb on - strand, within LRK53_RS02780at 638.717 kb on - strand, within LRK53_RS02780at 638.829 kb on + strand, within LRK53_RS02780at 638.899 kb on + strand, within LRK53_RS02780at 638.899 kb on + strand, within LRK53_RS02780at 638.899 kb on + strand, within LRK53_RS02780at 638.899 kb on + strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.900 kb on - strand, within LRK53_RS02780at 638.914 kb on + strand, within LRK53_RS02780at 638.914 kb on + strand, within LRK53_RS02780at 638.914 kb on + strand, within LRK53_RS02780at 638.914 kb on + strand, within LRK53_RS02780at 638.915 kb on - strand, within LRK53_RS02780at 638.915 kb on - strand, within LRK53_RS02780at 638.915 kb on - strand, within LRK53_RS02780at 638.915 kb on - strand, within LRK53_RS02780at 638.915 kb on - strand, within LRK53_RS02780at 638.923 kb on - strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.974 kb on + strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 638.975 kb on - strand, within LRK53_RS02780at 639.132 kb on + strandat 639.286 kb on + strandat 639.287 kb on - strandat 639.402 kb on + strandat 639.982 kb on + strand, within LRK53_RS02785at 639.983 kb on - strand, within LRK53_RS02785at 639.983 kb on - strand, within LRK53_RS02785at 640.609 kb on + strand, within LRK53_RS02785at 641.260 kb on + strand, within LRK53_RS02785at 641.261 kb on - strand, within LRK53_RS02785at 641.725 kb on + strand, within LRK53_RS02785at 641.726 kb on - strand, within LRK53_RS02785at 641.726 kb on - strand, within LRK53_RS02785at 641.726 kb on - strand, within LRK53_RS02785at 641.878 kb on + strand, within LRK53_RS02785at 641.878 kb on + strand, within LRK53_RS02785at 641.878 kb on + strand, within LRK53_RS02785at 641.878 kb on + strand, within LRK53_RS02785at 641.879 kb on - strand, within LRK53_RS02785at 642.049 kb on + strandat 642.050 kb on - strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.196 kb on + strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.197 kb on - strandat 642.250 kb on + strandat 642.250 kb on + strandat 642.250 kb on + strandat 642.250 kb on + strandat 642.250 kb on + strandat 642.251 kb on - strandat 642.251 kb on - strandat 642.251 kb on - strandat 642.251 kb on - strandat 642.251 kb on - strandat 642.251 kb on - strandat 642.556 kb on + strand, within LRK53_RS02790at 642.556 kb on + strand, within LRK53_RS02790at 642.557 kb on - strand, within LRK53_RS02790at 642.557 kb on - strand, within LRK53_RS02790at 642.557 kb on - strand, within LRK53_RS02790at 642.557 kb on - strand, within LRK53_RS02790at 642.557 kb on - strand, within LRK53_RS02790at 642.568 kb on + strand, within LRK53_RS02790at 642.568 kb on + strand, within LRK53_RS02790at 642.569 kb on - strand, within LRK53_RS02790at 642.569 kb on - strand, within LRK53_RS02790at 642.569 kb on - strand, within LRK53_RS02790at 642.619 kb on + strand, within LRK53_RS02790at 642.619 kb on + strand, within LRK53_RS02790at 642.620 kb on - strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.655 kb on + strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.656 kb on - strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.853 kb on + strand, within LRK53_RS02790at 642.854 kb on - strand, within LRK53_RS02790at 642.854 kb on - strand, within LRK53_RS02790at 642.854 kb on - strand, within LRK53_RS02790at 642.854 kb on - strand, within LRK53_RS02790at 643.072 kb on + strand, within LRK53_RS02790at 643.073 kb on - strand, within LRK53_RS02790at 643.090 kb on + strand, within LRK53_RS02790

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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638,587 + LRK53_RS02780 0.67 -1.4
638,587 + LRK53_RS02780 0.67 -1.4
638,587 + LRK53_RS02780 0.67 -1.2
638,587 + LRK53_RS02780 0.67 -0.6
638,587 + LRK53_RS02780 0.67 -0.6
638,588 - LRK53_RS02780 0.67 +0.6
638,588 - LRK53_RS02780 0.67 +1.0
638,588 - LRK53_RS02780 0.67 -1.0
638,588 - LRK53_RS02780 0.67 -1.4
638,588 - LRK53_RS02780 0.67 +0.6
638,716 + LRK53_RS02780 0.73 -1.4
638,716 + LRK53_RS02780 0.73 -2.0
638,717 - LRK53_RS02780 0.73 -1.6
638,717 - LRK53_RS02780 0.73 +1.0
638,829 + LRK53_RS02780 0.78 +1.0
638,899 + LRK53_RS02780 0.81 -0.4
638,899 + LRK53_RS02780 0.81 +0.6
638,899 + LRK53_RS02780 0.81 -0.8
638,899 + LRK53_RS02780 0.81 -0.8
638,900 - LRK53_RS02780 0.81 -0.0
638,900 - LRK53_RS02780 0.81 -0.4
638,900 - LRK53_RS02780 0.81 -1.0
638,900 - LRK53_RS02780 0.81 +0.3
638,900 - LRK53_RS02780 0.81 +0.1
638,900 - LRK53_RS02780 0.81 -0.0
638,900 - LRK53_RS02780 0.81 -0.6
638,900 - LRK53_RS02780 0.81 -0.6
638,900 - LRK53_RS02780 0.81 -1.6
638,900 - LRK53_RS02780 0.81 -0.0
638,914 + LRK53_RS02780 0.81 -2.5
638,914 + LRK53_RS02780 0.81 -0.1
638,914 + LRK53_RS02780 0.81 -1.0
638,914 + LRK53_RS02780 0.81 +0.4
638,915 - LRK53_RS02780 0.81 -0.3
638,915 - LRK53_RS02780 0.81 +1.0
638,915 - LRK53_RS02780 0.81 -0.6
638,915 - LRK53_RS02780 0.81 -1.0
638,915 - LRK53_RS02780 0.81 -0.4
638,923 - LRK53_RS02780 0.82 -0.0
638,974 + LRK53_RS02780 0.84 -2.3
638,974 + LRK53_RS02780 0.84 -0.3
638,974 + LRK53_RS02780 0.84 +1.6
638,974 + LRK53_RS02780 0.84 -0.6
638,974 + LRK53_RS02780 0.84 -0.6
638,974 + LRK53_RS02780 0.84 -0.8
638,974 + LRK53_RS02780 0.84 +1.0
638,975 - LRK53_RS02780 0.84 +1.0
638,975 - LRK53_RS02780 0.84 +1.6
638,975 - LRK53_RS02780 0.84 -0.6
638,975 - LRK53_RS02780 0.84 -1.0
638,975 - LRK53_RS02780 0.84 +2.0
638,975 - LRK53_RS02780 0.84 +1.0
639,132 + +0.3
639,286 + -0.8
639,287 - -0.4
639,402 + -2.6
639,982 + LRK53_RS02785 0.21 +1.0
639,983 - LRK53_RS02785 0.21 -1.5
639,983 - LRK53_RS02785 0.21 -0.0
640,609 + LRK53_RS02785 0.43 +0.4
641,260 + LRK53_RS02785 0.67 -0.0
641,261 - LRK53_RS02785 0.67 -1.6
641,725 + LRK53_RS02785 0.84 +0.6
641,726 - LRK53_RS02785 0.84 +0.1
641,726 - LRK53_RS02785 0.84 -1.0
641,726 - LRK53_RS02785 0.84 -0.2
641,878 + LRK53_RS02785 0.90 -0.5
641,878 + LRK53_RS02785 0.90 -0.2
641,878 + LRK53_RS02785 0.90 +1.0
641,878 + LRK53_RS02785 0.90 +1.4
641,879 - LRK53_RS02785 0.90 -2.4
642,049 + +0.3
642,050 - -0.8
642,196 + -0.6
642,196 + -1.0
642,196 + -1.4
642,196 + -1.6
642,196 + -1.1
642,196 + -0.6
642,196 + +2.0
642,196 + +1.0
642,196 + -2.5
642,196 + -0.2
642,196 + +1.0
642,196 + +0.4
642,196 + -1.6
642,196 + -0.0
642,197 - -1.0
642,197 - -0.0
642,197 - -0.6
642,197 - -2.6
642,197 - +0.1
642,197 - -0.5
642,197 - -0.4
642,197 - +1.0
642,197 - -0.5
642,197 - +1.0
642,197 - -0.0
642,197 - -1.0
642,250 + -1.6
642,250 + +0.5
642,250 + -0.6
642,250 + +0.4
642,250 + -1.6
642,251 - +0.4
642,251 - +0.2
642,251 - -0.6
642,251 - -0.0
642,251 - -0.0
642,251 - -0.6
642,556 + LRK53_RS02790 0.12 +0.4
642,556 + LRK53_RS02790 0.12 -1.6
642,557 - LRK53_RS02790 0.12 -1.0
642,557 - LRK53_RS02790 0.12 -0.7
642,557 - LRK53_RS02790 0.12 -0.0
642,557 - LRK53_RS02790 0.12 -1.8
642,557 - LRK53_RS02790 0.12 -0.0
642,568 + LRK53_RS02790 0.13 +1.0
642,568 + LRK53_RS02790 0.13 +0.7
642,569 - LRK53_RS02790 0.13 -0.9
642,569 - LRK53_RS02790 0.13 -0.0
642,569 - LRK53_RS02790 0.13 +0.2
642,619 + LRK53_RS02790 0.15 +1.0
642,619 + LRK53_RS02790 0.15 +1.0
642,620 - LRK53_RS02790 0.15 -1.4
642,655 + LRK53_RS02790 0.16 -0.5
642,655 + LRK53_RS02790 0.16 +0.2
642,655 + LRK53_RS02790 0.16 -0.0
642,655 + LRK53_RS02790 0.16 -1.0
642,655 + LRK53_RS02790 0.16 -0.0
642,655 + LRK53_RS02790 0.16 -0.6
642,655 + LRK53_RS02790 0.16 +1.0
642,655 + LRK53_RS02790 0.16 -0.5
642,655 + LRK53_RS02790 0.16 -2.0
642,655 + LRK53_RS02790 0.16 -0.1
642,655 + LRK53_RS02790 0.16 -0.0
642,655 + LRK53_RS02790 0.16 -0.0
642,655 + LRK53_RS02790 0.16 -0.4
642,655 + LRK53_RS02790 0.16 -0.4
642,655 + LRK53_RS02790 0.16 +1.0
642,655 + LRK53_RS02790 0.16 -1.7
642,655 + LRK53_RS02790 0.16 -2.1
642,656 - LRK53_RS02790 0.16 -0.0
642,656 - LRK53_RS02790 0.16 -1.0
642,656 - LRK53_RS02790 0.16 -0.0
642,656 - LRK53_RS02790 0.16 -0.9
642,656 - LRK53_RS02790 0.16 -0.6
642,656 - LRK53_RS02790 0.16 -0.4
642,656 - LRK53_RS02790 0.16 +2.0
642,656 - LRK53_RS02790 0.16 +3.0
642,656 - LRK53_RS02790 0.16 -0.8
642,656 - LRK53_RS02790 0.16 +1.0
642,656 - LRK53_RS02790 0.16 -1.0
642,656 - LRK53_RS02790 0.16 +1.0
642,656 - LRK53_RS02790 0.16 +0.6
642,656 - LRK53_RS02790 0.16 -0.2
642,656 - LRK53_RS02790 0.16 -0.6
642,656 - LRK53_RS02790 0.16 +0.1
642,656 - LRK53_RS02790 0.16 -0.3
642,656 - LRK53_RS02790 0.16 +1.0
642,656 - LRK53_RS02790 0.16 +1.0
642,656 - LRK53_RS02790 0.16 +0.1
642,656 - LRK53_RS02790 0.16 +0.4
642,656 - LRK53_RS02790 0.16 -1.0
642,656 - LRK53_RS02790 0.16 +1.0
642,656 - LRK53_RS02790 0.16 -1.6
642,656 - LRK53_RS02790 0.16 -0.8
642,656 - LRK53_RS02790 0.16 -0.0
642,853 + LRK53_RS02790 0.23 -1.8
642,853 + LRK53_RS02790 0.23 -1.0
642,853 + LRK53_RS02790 0.23 +0.4
642,853 + LRK53_RS02790 0.23 +0.2
642,853 + LRK53_RS02790 0.23 +1.3
642,853 + LRK53_RS02790 0.23 -0.3
642,853 + LRK53_RS02790 0.23 -1.9
642,853 + LRK53_RS02790 0.23 -1.0
642,853 + LRK53_RS02790 0.23 -0.7
642,854 - LRK53_RS02790 0.23 +1.0
642,854 - LRK53_RS02790 0.23 +1.0
642,854 - LRK53_RS02790 0.23 -0.8
642,854 - LRK53_RS02790 0.23 +1.6
643,072 + LRK53_RS02790 0.31 -0.8
643,073 - LRK53_RS02790 0.31 +2.6
643,090 + LRK53_RS02790 0.32 -2.4

Or see this region's nucleotide sequence