Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02285

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02275 and LRK53_RS02280 are separated by 68 nucleotidesLRK53_RS02280 and LRK53_RS02285 overlap by 4 nucleotidesLRK53_RS02285 and LRK53_RS02290 are separated by 160 nucleotides LRK53_RS02275: LRK53_RS02275 - YdcF family protein, at 526,850 to 527,587 _RS02275 LRK53_RS02280: LRK53_RS02280 - hypothetical protein, at 527,656 to 528,168 _RS02280 LRK53_RS02285: LRK53_RS02285 - oxygen-dependent coproporphyrinogen oxidase, at 528,165 to 529,067 _RS02285 LRK53_RS02290: LRK53_RS02290 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 529,228 to 530,571 _RS02290 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 527.481 kb on - strand, within LRK53_RS02275at 527.481 kb on - strand, within LRK53_RS02275at 527.481 kb on - strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.763 kb on + strand, within LRK53_RS02280at 527.763 kb on + strand, within LRK53_RS02280at 527.763 kb on + strand, within LRK53_RS02280at 527.764 kb on - strand, within LRK53_RS02280at 527.764 kb on - strand, within LRK53_RS02280at 527.824 kb on + strand, within LRK53_RS02280at 527.825 kb on - strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.875 kb on + strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.876 kb on - strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.899 kb on + strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.900 kb on - strand, within LRK53_RS02280at 527.941 kb on + strand, within LRK53_RS02280at 527.941 kb on + strand, within LRK53_RS02280at 527.942 kb on - strand, within LRK53_RS02280at 527.942 kb on - strand, within LRK53_RS02280at 527.942 kb on - strand, within LRK53_RS02280at 527.942 kb on - strand, within LRK53_RS02280at 528.131 kb on + strandat 528.131 kb on + strandat 528.131 kb on + strandat 528.131 kb on + strandat 528.132 kb on - strandat 528.132 kb on - strandat 528.132 kb on - strandat 528.132 kb on - strandat 528.132 kb on - strandat 528.589 kb on + strand, within LRK53_RS02285at 528.589 kb on + strand, within LRK53_RS02285at 528.675 kb on + strand, within LRK53_RS02285at 528.676 kb on - strand, within LRK53_RS02285at 528.681 kb on + strand, within LRK53_RS02285at 528.682 kb on - strand, within LRK53_RS02285at 528.682 kb on - strand, within LRK53_RS02285at 528.682 kb on - strand, within LRK53_RS02285at 528.726 kb on + strand, within LRK53_RS02285at 528.726 kb on + strand, within LRK53_RS02285at 528.726 kb on + strand, within LRK53_RS02285at 528.804 kb on + strand, within LRK53_RS02285at 528.805 kb on - strand, within LRK53_RS02285at 528.840 kb on + strand, within LRK53_RS02285at 528.870 kb on + strand, within LRK53_RS02285at 528.886 kb on - strand, within LRK53_RS02285at 528.907 kb on - strand, within LRK53_RS02285at 529.035 kb on - strandat 529.041 kb on + strandat 529.041 kb on + strandat 529.042 kb on - strandat 529.042 kb on - strandat 529.042 kb on - strandat 529.066 kb on - strandat 529.066 kb on - strandat 529.066 kb on - strandat 529.066 kb on - strandat 529.066 kb on - strandat 529.066 kb on - strandat 529.185 kb on + strandat 529.185 kb on + strandat 529.185 kb on + strandat 529.185 kb on + strandat 529.447 kb on + strand, within LRK53_RS02290at 529.447 kb on + strand, within LRK53_RS02290at 529.447 kb on + strand, within LRK53_RS02290at 529.447 kb on + strand, within LRK53_RS02290at 529.447 kb on + strand, within LRK53_RS02290at 529.448 kb on - strand, within LRK53_RS02290at 529.448 kb on - strand, within LRK53_RS02290at 529.448 kb on - strand, within LRK53_RS02290at 529.448 kb on - strand, within LRK53_RS02290at 529.734 kb on + strand, within LRK53_RS02290at 529.735 kb on - strand, within LRK53_RS02290at 529.859 kb on + strand, within LRK53_RS02290at 529.977 kb on + strand, within LRK53_RS02290

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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527,481 - LRK53_RS02275 0.86 -0.0
527,481 - LRK53_RS02275 0.86 -0.0
527,481 - LRK53_RS02275 0.86 +1.0
527,510 + LRK53_RS02275 0.89 -0.7
527,510 + LRK53_RS02275 0.89 -0.4
527,510 + LRK53_RS02275 0.89 -0.3
527,510 + LRK53_RS02275 0.89 -1.0
527,510 + LRK53_RS02275 0.89 -0.8
527,510 + LRK53_RS02275 0.89 +2.0
527,511 - LRK53_RS02275 0.90 +0.2
527,511 - LRK53_RS02275 0.90 +2.5
527,511 - LRK53_RS02275 0.90 -1.5
527,511 - LRK53_RS02275 0.90 -1.0
527,763 + LRK53_RS02280 0.21 -0.6
527,763 + LRK53_RS02280 0.21 -2.2
527,763 + LRK53_RS02280 0.21 -0.6
527,764 - LRK53_RS02280 0.21 +1.0
527,764 - LRK53_RS02280 0.21 -0.0
527,824 + LRK53_RS02280 0.33 +2.0
527,825 - LRK53_RS02280 0.33 -0.6
527,875 + LRK53_RS02280 0.43 -0.6
527,875 + LRK53_RS02280 0.43 +0.4
527,875 + LRK53_RS02280 0.43 +0.4
527,875 + LRK53_RS02280 0.43 -1.4
527,875 + LRK53_RS02280 0.43 +0.2
527,875 + LRK53_RS02280 0.43 -1.7
527,875 + LRK53_RS02280 0.43 -1.6
527,875 + LRK53_RS02280 0.43 -0.6
527,875 + LRK53_RS02280 0.43 -0.6
527,875 + LRK53_RS02280 0.43 +2.0
527,875 + LRK53_RS02280 0.43 -2.4
527,875 + LRK53_RS02280 0.43 -0.0
527,875 + LRK53_RS02280 0.43 -1.4
527,875 + LRK53_RS02280 0.43 -0.0
527,875 + LRK53_RS02280 0.43 +0.4
527,875 + LRK53_RS02280 0.43 +3.0
527,875 + LRK53_RS02280 0.43 -0.2
527,875 + LRK53_RS02280 0.43 -1.6
527,875 + LRK53_RS02280 0.43 -0.0
527,875 + LRK53_RS02280 0.43 -1.2
527,875 + LRK53_RS02280 0.43 -0.2
527,875 + LRK53_RS02280 0.43 +0.6
527,876 - LRK53_RS02280 0.43 +1.0
527,876 - LRK53_RS02280 0.43 -0.6
527,876 - LRK53_RS02280 0.43 -0.0
527,876 - LRK53_RS02280 0.43 +1.5
527,876 - LRK53_RS02280 0.43 -2.2
527,876 - LRK53_RS02280 0.43 -1.4
527,876 - LRK53_RS02280 0.43 -0.8
527,876 - LRK53_RS02280 0.43 -1.0
527,876 - LRK53_RS02280 0.43 -1.0
527,876 - LRK53_RS02280 0.43 -1.7
527,876 - LRK53_RS02280 0.43 -0.8
527,876 - LRK53_RS02280 0.43 -2.2
527,876 - LRK53_RS02280 0.43 +0.2
527,876 - LRK53_RS02280 0.43 -0.6
527,876 - LRK53_RS02280 0.43 -1.0
527,876 - LRK53_RS02280 0.43 -1.4
527,876 - LRK53_RS02280 0.43 +0.4
527,876 - LRK53_RS02280 0.43 +3.0
527,876 - LRK53_RS02280 0.43 -1.6
527,876 - LRK53_RS02280 0.43 -0.3
527,876 - LRK53_RS02280 0.43 +1.0
527,899 + LRK53_RS02280 0.47 +0.4
527,899 + LRK53_RS02280 0.47 +0.5
527,899 + LRK53_RS02280 0.47 -1.6
527,899 + LRK53_RS02280 0.47 +0.4
527,899 + LRK53_RS02280 0.47 -0.6
527,899 + LRK53_RS02280 0.47 +0.3
527,899 + LRK53_RS02280 0.47 -0.4
527,899 + LRK53_RS02280 0.47 -1.0
527,899 + LRK53_RS02280 0.47 -1.6
527,899 + LRK53_RS02280 0.47 -2.2
527,899 + LRK53_RS02280 0.47 -1.0
527,899 + LRK53_RS02280 0.47 +0.6
527,900 - LRK53_RS02280 0.48 +1.0
527,900 - LRK53_RS02280 0.48 -0.6
527,900 - LRK53_RS02280 0.48 -0.6
527,900 - LRK53_RS02280 0.48 +1.0
527,900 - LRK53_RS02280 0.48 +2.0
527,900 - LRK53_RS02280 0.48 +0.4
527,900 - LRK53_RS02280 0.48 -0.0
527,900 - LRK53_RS02280 0.48 -1.1
527,900 - LRK53_RS02280 0.48 -0.2
527,900 - LRK53_RS02280 0.48 +1.0
527,900 - LRK53_RS02280 0.48 -1.4
527,941 + LRK53_RS02280 0.56 -0.0
527,941 + LRK53_RS02280 0.56 -0.9
527,942 - LRK53_RS02280 0.56 -0.0
527,942 - LRK53_RS02280 0.56 -0.0
527,942 - LRK53_RS02280 0.56 +1.0
527,942 - LRK53_RS02280 0.56 -0.2
528,131 + -0.0
528,131 + -0.4
528,131 + +1.0
528,131 + +0.4
528,132 - -0.0
528,132 - -0.0
528,132 - -1.0
528,132 - +1.3
528,132 - -2.0
528,589 + LRK53_RS02285 0.47 -0.0
528,589 + LRK53_RS02285 0.47 -0.0
528,675 + LRK53_RS02285 0.56 -1.0
528,676 - LRK53_RS02285 0.57 -0.6
528,681 + LRK53_RS02285 0.57 +1.0
528,682 - LRK53_RS02285 0.57 -0.0
528,682 - LRK53_RS02285 0.57 -0.0
528,682 - LRK53_RS02285 0.57 -1.6
528,726 + LRK53_RS02285 0.62 -1.4
528,726 + LRK53_RS02285 0.62 -0.0
528,726 + LRK53_RS02285 0.62 -0.0
528,804 + LRK53_RS02285 0.71 -1.4
528,805 - LRK53_RS02285 0.71 -0.6
528,840 + LRK53_RS02285 0.75 -1.4
528,870 + LRK53_RS02285 0.78 -0.0
528,886 - LRK53_RS02285 0.80 -0.0
528,907 - LRK53_RS02285 0.82 -0.0
529,035 - -1.8
529,041 + -0.4
529,041 + -1.4
529,042 - -1.4
529,042 - -2.8
529,042 - -1.7
529,066 - +1.0
529,066 - -1.0
529,066 - -0.4
529,066 - -0.6
529,066 - -0.3
529,066 - -0.3
529,185 + +1.0
529,185 + -0.6
529,185 + +1.0
529,185 + -1.3
529,447 + LRK53_RS02290 0.16 -1.7
529,447 + LRK53_RS02290 0.16 -0.0
529,447 + LRK53_RS02290 0.16 -1.8
529,447 + LRK53_RS02290 0.16 +1.0
529,447 + LRK53_RS02290 0.16 +1.0
529,448 - LRK53_RS02290 0.16 +0.6
529,448 - LRK53_RS02290 0.16 +0.6
529,448 - LRK53_RS02290 0.16 +1.0
529,448 - LRK53_RS02290 0.16 +1.0
529,734 + LRK53_RS02290 0.38 +0.2
529,735 - LRK53_RS02290 0.38 +1.0
529,859 + LRK53_RS02290 0.47 -1.6
529,977 + LRK53_RS02290 0.56 +0.4

Or see this region's nucleotide sequence