Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02270

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02260 and LRK53_RS02265 overlap by 4 nucleotidesLRK53_RS02265 and LRK53_RS02270 overlap by 4 nucleotidesLRK53_RS02270 and LRK53_RS02275 are separated by 103 nucleotidesLRK53_RS02275 and LRK53_RS02280 are separated by 68 nucleotides LRK53_RS02260: LRK53_RS02260 - glycosyltransferase family 2 protein, at 523,980 to 524,765 _RS02260 LRK53_RS02265: LRK53_RS02265 - beta-ketoacyl synthase chain length factor, at 524,762 to 525,556 _RS02265 LRK53_RS02270: LRK53_RS02270 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 525,553 to 526,746 _RS02270 LRK53_RS02275: LRK53_RS02275 - YdcF family protein, at 526,850 to 527,587 _RS02275 LRK53_RS02280: LRK53_RS02280 - hypothetical protein, at 527,656 to 528,168 _RS02280 Position (kb) 525 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.785 kb on + strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.800 kb on + strandat 524.800 kb on + strandat 524.801 kb on - strandat 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.539 kb on + strandat 525.540 kb on - strandat 525.893 kb on + strand, within LRK53_RS02270at 525.893 kb on + strand, within LRK53_RS02270at 525.893 kb on + strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.990 kb on - strand, within LRK53_RS02270at 526.721 kb on + strandat 526.721 kb on + strandat 526.721 kb on + strandat 526.721 kb on + strandat 526.722 kb on - strandat 526.722 kb on - strandat 526.722 kb on - strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.792 kb on + strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.793 kb on - strandat 526.849 kb on + strandat 526.849 kb on + strandat 526.849 kb on + strandat 526.849 kb on + strandat 526.850 kb on - strandat 526.850 kb on - strandat 526.922 kb on + strandat 526.923 kb on - strandat 526.923 kb on - strandat 526.923 kb on - strandat 526.946 kb on + strand, within LRK53_RS02275at 526.946 kb on + strand, within LRK53_RS02275at 526.946 kb on + strand, within LRK53_RS02275at 526.946 kb on + strand, within LRK53_RS02275at 526.946 kb on + strand, within LRK53_RS02275at 526.947 kb on - strand, within LRK53_RS02275at 526.947 kb on - strand, within LRK53_RS02275at 526.947 kb on - strand, within LRK53_RS02275at 526.947 kb on - strand, within LRK53_RS02275at 526.947 kb on - strand, within LRK53_RS02275at 527.006 kb on + strand, within LRK53_RS02275at 527.006 kb on + strand, within LRK53_RS02275at 527.007 kb on - strand, within LRK53_RS02275at 527.007 kb on - strand, within LRK53_RS02275at 527.007 kb on - strand, within LRK53_RS02275at 527.007 kb on - strand, within LRK53_RS02275at 527.117 kb on + strand, within LRK53_RS02275at 527.118 kb on - strand, within LRK53_RS02275at 527.481 kb on - strand, within LRK53_RS02275at 527.481 kb on - strand, within LRK53_RS02275at 527.481 kb on - strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.510 kb on + strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275at 527.511 kb on - strand, within LRK53_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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524,785 + -0.6
524,786 - -0.6
524,786 - -0.0
524,786 - +2.0
524,800 + +0.5
524,800 + -1.7
524,801 - -1.4
525,276 + LRK53_RS02265 0.65 +1.0
525,276 + LRK53_RS02265 0.65 +0.1
525,276 + LRK53_RS02265 0.65 -1.4
525,276 + LRK53_RS02265 0.65 -1.4
525,276 + LRK53_RS02265 0.65 +0.6
525,276 + LRK53_RS02265 0.65 +1.0
525,276 + LRK53_RS02265 0.65 +0.7
525,276 + LRK53_RS02265 0.65 -0.0
525,276 + LRK53_RS02265 0.65 -0.8
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -0.4
525,276 + LRK53_RS02265 0.65 +0.1
525,276 + LRK53_RS02265 0.65 -0.0
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 +0.2
525,277 - LRK53_RS02265 0.65 -1.4
525,277 - LRK53_RS02265 0.65 -1.6
525,277 - LRK53_RS02265 0.65 +2.5
525,277 - LRK53_RS02265 0.65 +2.0
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 -2.3
525,277 - LRK53_RS02265 0.65 -1.4
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 +0.4
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 -0.5
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 +0.5
525,277 - LRK53_RS02265 0.65 -2.2
525,277 - LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 -1.0
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 +0.4
525,277 - LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 -1.0
525,277 - LRK53_RS02265 0.65 -2.6
525,539 + -1.2
525,540 - +2.0
525,893 + LRK53_RS02270 0.28 -1.2
525,893 + LRK53_RS02270 0.28 -0.0
525,893 + LRK53_RS02270 0.28 -1.5
525,894 - LRK53_RS02270 0.29 -0.7
525,894 - LRK53_RS02270 0.29 -1.3
525,894 - LRK53_RS02270 0.29 -2.2
525,894 - LRK53_RS02270 0.29 -1.3
525,894 - LRK53_RS02270 0.29 -2.2
525,894 - LRK53_RS02270 0.29 -1.0
525,894 - LRK53_RS02270 0.29 -0.2
525,894 - LRK53_RS02270 0.29 -1.2
525,894 - LRK53_RS02270 0.29 -2.2
525,894 - LRK53_RS02270 0.29 -1.5
525,989 + LRK53_RS02270 0.37 -1.0
525,989 + LRK53_RS02270 0.37 -1.2
525,989 + LRK53_RS02270 0.37 -0.0
525,990 - LRK53_RS02270 0.37 -0.0
526,721 + -0.4
526,721 + -2.0
526,721 + -0.6
526,721 + -1.1
526,722 - -0.6
526,722 - -1.8
526,722 - -0.2
526,792 + -1.0
526,792 + -1.6
526,792 + +1.0
526,792 + -0.9
526,792 + -0.0
526,792 + +0.4
526,792 + +1.0
526,793 - +1.0
526,793 - -1.4
526,793 - +0.4
526,793 - -1.6
526,793 - +0.4
526,793 - -0.6
526,793 - -0.6
526,849 + +0.7
526,849 + -0.6
526,849 + -0.0
526,849 + -0.9
526,850 - -1.6
526,850 - +1.5
526,922 + -0.0
526,923 - -2.8
526,923 - -1.4
526,923 - -1.1
526,946 + LRK53_RS02275 0.13 -0.0
526,946 + LRK53_RS02275 0.13 +0.5
526,946 + LRK53_RS02275 0.13 -0.8
526,946 + LRK53_RS02275 0.13 -0.8
526,946 + LRK53_RS02275 0.13 -2.0
526,947 - LRK53_RS02275 0.13 -0.3
526,947 - LRK53_RS02275 0.13 -0.0
526,947 - LRK53_RS02275 0.13 -0.0
526,947 - LRK53_RS02275 0.13 +0.5
526,947 - LRK53_RS02275 0.13 -0.0
527,006 + LRK53_RS02275 0.21 +1.3
527,006 + LRK53_RS02275 0.21 +0.4
527,007 - LRK53_RS02275 0.21 -1.0
527,007 - LRK53_RS02275 0.21 -0.0
527,007 - LRK53_RS02275 0.21 +1.0
527,007 - LRK53_RS02275 0.21 -1.2
527,117 + LRK53_RS02275 0.36 +2.0
527,118 - LRK53_RS02275 0.36 -0.2
527,481 - LRK53_RS02275 0.86 -0.0
527,481 - LRK53_RS02275 0.86 -0.0
527,481 - LRK53_RS02275 0.86 +1.0
527,510 + LRK53_RS02275 0.89 -0.7
527,510 + LRK53_RS02275 0.89 -0.4
527,510 + LRK53_RS02275 0.89 -0.3
527,510 + LRK53_RS02275 0.89 -1.0
527,510 + LRK53_RS02275 0.89 -0.8
527,510 + LRK53_RS02275 0.89 +2.0
527,511 - LRK53_RS02275 0.90 +0.2
527,511 - LRK53_RS02275 0.90 +2.5
527,511 - LRK53_RS02275 0.90 -1.5
527,511 - LRK53_RS02275 0.90 -1.0

Or see this region's nucleotide sequence