Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00775

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00770 and LRK53_RS00775 are separated by 207 nucleotidesLRK53_RS00775 and LRK53_RS00780 are separated by 43 nucleotidesLRK53_RS00780 and LRK53_RS00785 are separated by 51 nucleotides LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807 _RS00770 LRK53_RS00775: LRK53_RS00775 - metalloregulator ArsR/SmtB family transcription factor, at 182,015 to 182,365 _RS00775 LRK53_RS00780: LRK53_RS00780 - MBL fold metallo-hydrolase, at 182,409 to 183,275 _RS00780 LRK53_RS00785: LRK53_RS00785 - membrane protein, at 183,327 to 184,184 _RS00785 Position (kb) 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.230 kb on + strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.231 kb on - strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.248 kb on + strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.249 kb on - strand, within LRK53_RS00770at 181.443 kb on + strand, within LRK53_RS00770at 181.444 kb on - strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.509 kb on + strand, within LRK53_RS00770at 181.510 kb on - strand, within LRK53_RS00770at 181.516 kb on - strand, within LRK53_RS00770at 181.756 kb on - strandat 181.883 kb on + strandat 181.884 kb on - strandat 181.913 kb on + strandat 181.913 kb on + strandat 181.913 kb on + strandat 181.913 kb on + strandat 181.978 kb on + strandat 181.978 kb on + strandat 181.979 kb on - strandat 182.232 kb on + strand, within LRK53_RS00775at 182.265 kb on - strand, within LRK53_RS00775at 182.265 kb on - strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.309 kb on + strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.310 kb on - strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.318 kb on + strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.319 kb on - strand, within LRK53_RS00775at 182.463 kb on + strandat 182.463 kb on + strandat 182.463 kb on + strandat 182.463 kb on + strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.464 kb on - strandat 182.521 kb on - strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.652 kb on + strand, within LRK53_RS00780at 182.653 kb on - strand, within LRK53_RS00780at 182.653 kb on - strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.846 kb on + strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.847 kb on - strand, within LRK53_RS00780at 182.964 kb on + strand, within LRK53_RS00780at 182.964 kb on + strand, within LRK53_RS00780at 182.965 kb on - strand, within LRK53_RS00780at 182.965 kb on - strand, within LRK53_RS00780at 183.027 kb on + strand, within LRK53_RS00780at 183.027 kb on + strand, within LRK53_RS00780at 183.027 kb on + strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.028 kb on - strand, within LRK53_RS00780at 183.246 kb on + strandat 183.246 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.333 kb on + strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.334 kb on - strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strandat 183.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
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181,230 + LRK53_RS00770 0.56 -0.5
181,230 + LRK53_RS00770 0.56 +0.4
181,230 + LRK53_RS00770 0.56 +2.6
181,230 + LRK53_RS00770 0.56 -3.2
181,230 + LRK53_RS00770 0.56 +0.0
181,230 + LRK53_RS00770 0.56 +0.8
181,230 + LRK53_RS00770 0.56 -0.9
181,230 + LRK53_RS00770 0.56 -1.0
181,231 - LRK53_RS00770 0.56 +0.0
181,231 - LRK53_RS00770 0.56 +1.0
181,231 - LRK53_RS00770 0.56 +0.4
181,231 - LRK53_RS00770 0.56 -1.8
181,231 - LRK53_RS00770 0.56 -0.6
181,231 - LRK53_RS00770 0.56 -0.6
181,248 + LRK53_RS00770 0.57 +0.0
181,248 + LRK53_RS00770 0.57 -1.1
181,248 + LRK53_RS00770 0.57 -2.2
181,248 + LRK53_RS00770 0.57 -0.3
181,248 + LRK53_RS00770 0.57 -1.0
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 -1.5
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 -1.8
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 +0.0
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 -0.3
181,248 + LRK53_RS00770 0.57 -1.8
181,248 + LRK53_RS00770 0.57 -2.7
181,248 + LRK53_RS00770 0.57 +1.0
181,248 + LRK53_RS00770 0.57 -0.4
181,248 + LRK53_RS00770 0.57 -1.1
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 +2.0
181,248 + LRK53_RS00770 0.57 -0.5
181,248 + LRK53_RS00770 0.57 +0.0
181,248 + LRK53_RS00770 0.57 -1.0
181,248 + LRK53_RS00770 0.57 -2.2
181,248 + LRK53_RS00770 0.57 +1.0
181,248 + LRK53_RS00770 0.57 -0.7
181,248 + LRK53_RS00770 0.57 -0.6
181,248 + LRK53_RS00770 0.57 -1.3
181,249 - LRK53_RS00770 0.57 -0.8
181,249 - LRK53_RS00770 0.57 +1.0
181,249 - LRK53_RS00770 0.57 -2.0
181,249 - LRK53_RS00770 0.57 +0.0
181,249 - LRK53_RS00770 0.57 -1.1
181,249 - LRK53_RS00770 0.57 +0.3
181,249 - LRK53_RS00770 0.57 -0.9
181,249 - LRK53_RS00770 0.57 -1.4
181,249 - LRK53_RS00770 0.57 -0.6
181,249 - LRK53_RS00770 0.57 -1.6
181,249 - LRK53_RS00770 0.57 -0.6
181,249 - LRK53_RS00770 0.57 +0.5
181,249 - LRK53_RS00770 0.57 -0.9
181,249 - LRK53_RS00770 0.57 -0.3
181,249 - LRK53_RS00770 0.57 +0.0
181,249 - LRK53_RS00770 0.57 -2.7
181,249 - LRK53_RS00770 0.57 -0.4
181,249 - LRK53_RS00770 0.57 -1.2
181,249 - LRK53_RS00770 0.57 +0.3
181,249 - LRK53_RS00770 0.57 +1.0
181,249 - LRK53_RS00770 0.57 +2.0
181,249 - LRK53_RS00770 0.57 -1.0
181,249 - LRK53_RS00770 0.57 +0.0
181,443 + LRK53_RS00770 0.72 +2.6
181,444 - LRK53_RS00770 0.72 +1.0
181,509 + LRK53_RS00770 0.77 -0.7
181,509 + LRK53_RS00770 0.77 +0.4
181,510 - LRK53_RS00770 0.77 -0.6
181,516 - LRK53_RS00770 0.78 -0.6
181,756 - -1.0
181,883 + +0.3
181,884 - -1.0
181,913 + +1.0
181,913 + +0.4
181,913 + -0.6
181,913 + -1.3
181,978 + +0.0
181,978 + -0.7
181,979 - -0.6
182,232 + LRK53_RS00775 0.62 -1.4
182,265 - LRK53_RS00775 0.71 -1.4
182,265 - LRK53_RS00775 0.71 +0.0
182,309 + LRK53_RS00775 0.84 -0.3
182,309 + LRK53_RS00775 0.84 +1.4
182,309 + LRK53_RS00775 0.84 +1.0
182,309 + LRK53_RS00775 0.84 -1.3
182,309 + LRK53_RS00775 0.84 -1.3
182,309 + LRK53_RS00775 0.84 -2.0
182,309 + LRK53_RS00775 0.84 -0.8
182,309 + LRK53_RS00775 0.84 -0.2
182,310 - LRK53_RS00775 0.84 -1.4
182,310 - LRK53_RS00775 0.84 +1.0
182,310 - LRK53_RS00775 0.84 -0.2
182,310 - LRK53_RS00775 0.84 +0.3
182,310 - LRK53_RS00775 0.84 -2.0
182,310 - LRK53_RS00775 0.84 -0.3
182,310 - LRK53_RS00775 0.84 -0.7
182,310 - LRK53_RS00775 0.84 -0.8
182,310 - LRK53_RS00775 0.84 -0.3
182,310 - LRK53_RS00775 0.84 -2.5
182,310 - LRK53_RS00775 0.84 +2.6
182,310 - LRK53_RS00775 0.84 -0.8
182,310 - LRK53_RS00775 0.84 +0.1
182,310 - LRK53_RS00775 0.84 -0.8
182,318 + LRK53_RS00775 0.86 +1.0
182,318 + LRK53_RS00775 0.86 -0.7
182,318 + LRK53_RS00775 0.86 +0.0
182,318 + LRK53_RS00775 0.86 +0.3
182,318 + LRK53_RS00775 0.86 +1.0
182,318 + LRK53_RS00775 0.86 -0.6
182,318 + LRK53_RS00775 0.86 -1.7
182,318 + LRK53_RS00775 0.86 -1.0
182,318 + LRK53_RS00775 0.86 -0.6
182,318 + LRK53_RS00775 0.86 -1.2
182,318 + LRK53_RS00775 0.86 -1.2
182,318 + LRK53_RS00775 0.86 +1.0
182,318 + LRK53_RS00775 0.86 -1.3
182,318 + LRK53_RS00775 0.86 -1.3
182,318 + LRK53_RS00775 0.86 +1.6
182,318 + LRK53_RS00775 0.86 -1.0
182,318 + LRK53_RS00775 0.86 -1.5
182,319 - LRK53_RS00775 0.87 +0.0
182,319 - LRK53_RS00775 0.87 -0.8
182,319 - LRK53_RS00775 0.87 -1.3
182,319 - LRK53_RS00775 0.87 -1.0
182,319 - LRK53_RS00775 0.87 -1.3
182,319 - LRK53_RS00775 0.87 -1.7
182,319 - LRK53_RS00775 0.87 -1.7
182,319 - LRK53_RS00775 0.87 -1.6
182,319 - LRK53_RS00775 0.87 +1.0
182,319 - LRK53_RS00775 0.87 +0.0
182,319 - LRK53_RS00775 0.87 -2.0
182,319 - LRK53_RS00775 0.87 -1.7
182,319 - LRK53_RS00775 0.87 -0.2
182,319 - LRK53_RS00775 0.87 -0.6
182,463 + +0.0
182,463 + -2.4
182,463 + -0.6
182,463 + +0.0
182,464 - -1.8
182,464 - -1.2
182,464 - +1.0
182,464 - -1.6
182,464 - -0.9
182,464 - -0.1
182,521 - LRK53_RS00780 0.13 -0.9
182,652 + LRK53_RS00780 0.28 -2.2
182,652 + LRK53_RS00780 0.28 -1.0
182,652 + LRK53_RS00780 0.28 +0.3
182,652 + LRK53_RS00780 0.28 -0.4
182,652 + LRK53_RS00780 0.28 +0.0
182,652 + LRK53_RS00780 0.28 +0.3
182,652 + LRK53_RS00780 0.28 -2.8
182,652 + LRK53_RS00780 0.28 +1.0
182,652 + LRK53_RS00780 0.28 +0.5
182,652 + LRK53_RS00780 0.28 -0.6
182,653 - LRK53_RS00780 0.28 -1.3
182,653 - LRK53_RS00780 0.28 -0.8
182,846 + LRK53_RS00780 0.50 -1.8
182,846 + LRK53_RS00780 0.50 -0.4
182,846 + LRK53_RS00780 0.50 -0.3
182,846 + LRK53_RS00780 0.50 -0.3
182,846 + LRK53_RS00780 0.50 +0.0
182,846 + LRK53_RS00780 0.50 -0.8
182,846 + LRK53_RS00780 0.50 +0.0
182,846 + LRK53_RS00780 0.50 +0.0
182,847 - LRK53_RS00780 0.51 -1.0
182,847 - LRK53_RS00780 0.51 -1.5
182,847 - LRK53_RS00780 0.51 +1.0
182,847 - LRK53_RS00780 0.51 +0.0
182,847 - LRK53_RS00780 0.51 -0.9
182,964 + LRK53_RS00780 0.64 -0.6
182,964 + LRK53_RS00780 0.64 +1.0
182,965 - LRK53_RS00780 0.64 -0.4
182,965 - LRK53_RS00780 0.64 +0.0
183,027 + LRK53_RS00780 0.71 -1.0
183,027 + LRK53_RS00780 0.71 -0.4
183,027 + LRK53_RS00780 0.71 +0.0
183,028 - LRK53_RS00780 0.71 -1.8
183,028 - LRK53_RS00780 0.71 -1.2
183,028 - LRK53_RS00780 0.71 -1.3
183,028 - LRK53_RS00780 0.71 -1.1
183,028 - LRK53_RS00780 0.71 -0.6
183,246 + -1.3
183,246 + +0.0
183,333 + -1.4
183,333 + +1.0
183,333 + -0.6
183,333 + +0.0
183,333 + -0.6
183,333 + -0.6
183,333 + +0.5
183,333 + +0.4
183,333 + -1.0
183,333 + -1.0
183,333 + -0.9
183,333 + +0.0
183,333 + -2.6
183,333 + -0.2
183,333 + +0.0
183,334 - -2.0
183,334 - -0.2
183,334 - -1.3
183,334 - -0.3
183,334 - -2.0
183,334 - +0.4
183,334 - +1.0
183,334 - -1.0
183,334 - -1.4
183,334 - -1.7
183,334 - -0.6
183,334 - +0.0
183,334 - +0.0
183,334 - +1.0
183,334 - -0.3
183,337 + -1.1
183,337 + -1.6
183,337 + -1.3
183,337 + -1.3
183,337 + -1.2
183,338 - -0.9
183,338 - -0.8
183,338 - -0.7
183,338 - -1.6
183,338 - -2.0

Or see this region's nucleotide sequence