Experiment: WM_EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25690 and JDDGAC_25695 are separated by 159 nucleotides JDDGAC_25695 and JDDGAC_25700 overlap by 14 nucleotides JDDGAC_25700 and JDDGAC_25705 overlap by 11 nucleotides JDDGAC_25705 and JDDGAC_25710 overlap by 4 nucleotides JDDGAC_25710 and yfgI are separated by 217 nucleotides
JDDGAC_25690: JDDGAC_25690 - acyltransferase, at 4,909,649 to 4,910,665
_25690
JDDGAC_25695: JDDGAC_25695 - Putative phage holin, at 4,910,825 to 4,911,229
_25695
JDDGAC_25700: JDDGAC_25700 - phage holin family protein, at 4,911,216 to 4,911,524
_25700
JDDGAC_25705: JDDGAC_25705 - endolysin, at 4,911,514 to 4,912,143
_25705
JDDGAC_25710: JDDGAC_25710 - DUF2514 domain-containing protein, at 4,912,140 to 4,912,622
_25710
JDDGAC_25715: yfgI - Uncharacterized protein YfgI, at 4,912,840 to 4,913,379
yfgI
Position (kb) 4911
4912
4913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4910.586 kb on - strand at 4910.586 kb on - strand at 4910.587 kb on + strand at 4910.679 kb on - strand at 4910.700 kb on + strand at 4910.824 kb on + strand at 4910.825 kb on - strand at 4910.825 kb on - strand at 4910.889 kb on + strand, within JDDGAC_25695 at 4911.073 kb on + strand, within JDDGAC_25695 at 4911.074 kb on - strand, within JDDGAC_25695 at 4911.248 kb on + strand, within JDDGAC_25700 at 4911.248 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.269 kb on + strand, within JDDGAC_25700 at 4911.270 kb on - strand, within JDDGAC_25700 at 4911.270 kb on - strand, within JDDGAC_25700 at 4911.272 kb on - strand, within JDDGAC_25700 at 4911.272 kb on - strand, within JDDGAC_25700 at 4911.299 kb on + strand, within JDDGAC_25700 at 4911.339 kb on + strand, within JDDGAC_25700 at 4911.384 kb on + strand, within JDDGAC_25700 at 4911.523 kb on - strand at 4911.547 kb on - strand at 4911.582 kb on + strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.583 kb on - strand, within JDDGAC_25705 at 4911.585 kb on - strand, within JDDGAC_25705 at 4911.698 kb on - strand, within JDDGAC_25705 at 4911.830 kb on - strand, within JDDGAC_25705 at 4911.874 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.916 kb on + strand, within JDDGAC_25705 at 4912.058 kb on + strand, within JDDGAC_25705 at 4912.059 kb on - strand, within JDDGAC_25705 at 4912.125 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.178 kb on - strand at 4912.181 kb on + strand at 4912.182 kb on - strand at 4912.455 kb on + strand, within JDDGAC_25710 at 4912.455 kb on + strand, within JDDGAC_25710 at 4912.457 kb on + strand, within JDDGAC_25710 at 4912.458 kb on - strand, within JDDGAC_25710 at 4912.602 kb on + strand at 4912.602 kb on + strand at 4912.603 kb on - strand at 4912.785 kb on - strand at 4912.787 kb on + strand at 4912.788 kb on - strand at 4912.831 kb on + strand at 4912.864 kb on - strand at 4912.917 kb on + strand, within yfgI at 4912.918 kb on - strand, within yfgI at 4912.989 kb on + strand, within yfgI at 4913.065 kb on + strand, within yfgI at 4913.125 kb on - strand, within yfgI
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV146 remove 4,910,586 - +2.4 4,910,586 - -0.8 4,910,587 + -1.2 4,910,679 - -1.3 4,910,700 + -1.6 4,910,824 + -2.8 4,910,825 - +0.5 4,910,825 - +2.4 4,910,889 + JDDGAC_25695 0.16 +0.2 4,911,073 + JDDGAC_25695 0.61 +2.0 4,911,074 - JDDGAC_25695 0.61 +1.8 4,911,248 + JDDGAC_25700 0.10 +1.2 4,911,248 + JDDGAC_25700 0.10 +1.4 4,911,269 + JDDGAC_25700 0.17 +0.8 4,911,269 + JDDGAC_25700 0.17 +2.0 4,911,269 + JDDGAC_25700 0.17 +1.9 4,911,269 + JDDGAC_25700 0.17 +1.6 4,911,269 + JDDGAC_25700 0.17 +0.9 4,911,270 - JDDGAC_25700 0.17 +2.6 4,911,270 - JDDGAC_25700 0.17 +0.0 4,911,272 - JDDGAC_25700 0.18 +1.8 4,911,272 - JDDGAC_25700 0.18 +1.4 4,911,299 + JDDGAC_25700 0.27 -0.2 4,911,339 + JDDGAC_25700 0.40 +1.8 4,911,384 + JDDGAC_25700 0.54 +1.9 4,911,523 - -0.6 4,911,547 - +1.9 4,911,582 + JDDGAC_25705 0.11 +1.6 4,911,583 - JDDGAC_25705 0.11 +2.7 4,911,583 - JDDGAC_25705 0.11 +2.1 4,911,583 - JDDGAC_25705 0.11 +1.8 4,911,583 - JDDGAC_25705 0.11 +1.4 4,911,585 - JDDGAC_25705 0.11 +0.3 4,911,698 - JDDGAC_25705 0.29 +2.0 4,911,830 - JDDGAC_25705 0.50 +3.1 4,911,874 + JDDGAC_25705 0.57 +2.6 4,911,912 + JDDGAC_25705 0.63 +4.1 4,911,912 + JDDGAC_25705 0.63 +1.5 4,911,916 + JDDGAC_25705 0.64 +1.1 4,912,058 + JDDGAC_25705 0.86 +3.6 4,912,059 - JDDGAC_25705 0.87 +2.6 4,912,125 + +1.8 4,912,177 + +1.8 4,912,177 + +2.3 4,912,177 + +0.8 4,912,178 - +3.2 4,912,181 + +1.0 4,912,182 - +0.5 4,912,455 + JDDGAC_25710 0.65 +2.2 4,912,455 + JDDGAC_25710 0.65 +1.5 4,912,457 + JDDGAC_25710 0.66 +1.5 4,912,458 - JDDGAC_25710 0.66 +1.1 4,912,602 + -3.2 4,912,602 + +0.2 4,912,603 - +1.8 4,912,785 - -0.5 4,912,787 + +0.4 4,912,788 - -1.2 4,912,831 + -1.4 4,912,864 - -0.4 4,912,917 + yfgI JDDGAC_25715 0.14 +2.1 4,912,918 - yfgI JDDGAC_25715 0.14 -2.5 4,912,989 + yfgI JDDGAC_25715 0.28 +0.9 4,913,065 + yfgI JDDGAC_25715 0.42 +0.4 4,913,125 - yfgI JDDGAC_25715 0.53 -0.8
Or see this region's nucleotide sequence