Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_10260

Experiment: G1M3_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_10255 and HUW76_10260 overlap by 14 nucleotidesHUW76_10260 and HUW76_10265 are separated by 170 nucleotidesHUW76_10265 and HUW76_10270 are separated by 2 nucleotides HUW76_10255: HUW76_10255 - V-type ATP synthase subunit I, at 2,147,349 to 2,149,265 _10255 HUW76_10260: HUW76_10260 - hypothetical protein, at 2,149,252 to 2,149,578 _10260 HUW76_10265: HUW76_10265 - thiamine phosphate synthase, at 2,149,749 to 2,150,369 _10265 HUW76_10270: HUW76_10270 - 2-iminoacetate synthase ThiH, at 2,150,372 to 2,151,502 _10270 Position (kb) 2149 2150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2148.260 kb on + strand, within HUW76_10255at 2148.287 kb on + strand, within HUW76_10255at 2148.287 kb on + strand, within HUW76_10255at 2148.325 kb on - strand, within HUW76_10255at 2148.325 kb on - strand, within HUW76_10255at 2148.410 kb on - strand, within HUW76_10255at 2148.420 kb on - strand, within HUW76_10255at 2148.517 kb on + strand, within HUW76_10255at 2148.517 kb on + strand, within HUW76_10255at 2148.525 kb on + strand, within HUW76_10255at 2148.525 kb on + strand, within HUW76_10255at 2148.574 kb on - strand, within HUW76_10255at 2148.606 kb on - strand, within HUW76_10255at 2148.606 kb on - strand, within HUW76_10255at 2148.708 kb on - strand, within HUW76_10255at 2148.708 kb on - strand, within HUW76_10255at 2148.708 kb on - strand, within HUW76_10255at 2148.708 kb on - strand, within HUW76_10255at 2148.723 kb on + strand, within HUW76_10255at 2148.723 kb on + strand, within HUW76_10255at 2148.724 kb on + strand, within HUW76_10255at 2148.724 kb on + strand, within HUW76_10255at 2148.724 kb on + strand, within HUW76_10255at 2148.724 kb on + strand, within HUW76_10255at 2148.724 kb on + strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.732 kb on - strand, within HUW76_10255at 2148.772 kb on - strand, within HUW76_10255at 2148.785 kb on - strand, within HUW76_10255at 2148.787 kb on - strand, within HUW76_10255at 2148.937 kb on + strand, within HUW76_10255at 2148.937 kb on + strand, within HUW76_10255at 2148.937 kb on + strand, within HUW76_10255at 2148.937 kb on + strand, within HUW76_10255at 2148.945 kb on - strand, within HUW76_10255at 2148.945 kb on - strand, within HUW76_10255at 2148.945 kb on - strand, within HUW76_10255at 2148.945 kb on - strand, within HUW76_10255at 2149.033 kb on + strand, within HUW76_10255at 2149.402 kb on + strand, within HUW76_10260at 2149.513 kb on - strand, within HUW76_10260at 2149.569 kb on - strandat 2149.569 kb on - strandat 2149.582 kb on - strandat 2149.582 kb on - strandat 2149.632 kb on - strandat 2149.732 kb on - strandat 2149.782 kb on + strandat 2149.782 kb on + strandat 2149.789 kb on - strandat 2149.789 kb on - strandat 2149.891 kb on + strand, within HUW76_10265at 2149.906 kb on - strand, within HUW76_10265at 2149.929 kb on - strand, within HUW76_10265at 2150.074 kb on - strand, within HUW76_10265at 2150.074 kb on - strand, within HUW76_10265at 2150.095 kb on - strand, within HUW76_10265at 2150.406 kb on + strandat 2150.407 kb on + strandat 2150.484 kb on - strandat 2150.511 kb on + strand, within HUW76_10270at 2150.511 kb on + strand, within HUW76_10270at 2150.511 kb on + strand, within HUW76_10270at 2150.514 kb on + strand, within HUW76_10270at 2150.521 kb on - strand, within HUW76_10270at 2150.528 kb on - strand, within HUW76_10270at 2150.528 kb on - strand, within HUW76_10270

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D4
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2,148,260 + HUW76_10255 0.48 +1.2
2,148,287 + HUW76_10255 0.49 -2.1
2,148,287 + HUW76_10255 0.49 -1.8
2,148,325 - HUW76_10255 0.51 +1.6
2,148,325 - HUW76_10255 0.51 -0.1
2,148,410 - HUW76_10255 0.55 -0.3
2,148,420 - HUW76_10255 0.56 -2.1
2,148,517 + HUW76_10255 0.61 -1.7
2,148,517 + HUW76_10255 0.61 -1.0
2,148,525 + HUW76_10255 0.61 +0.4
2,148,525 + HUW76_10255 0.61 -0.0
2,148,574 - HUW76_10255 0.64 -0.2
2,148,606 - HUW76_10255 0.66 -1.8
2,148,606 - HUW76_10255 0.66 +0.2
2,148,708 - HUW76_10255 0.71 +2.1
2,148,708 - HUW76_10255 0.71 -0.9
2,148,708 - HUW76_10255 0.71 +0.2
2,148,708 - HUW76_10255 0.71 -0.3
2,148,723 + HUW76_10255 0.72 +0.3
2,148,723 + HUW76_10255 0.72 +0.5
2,148,724 + HUW76_10255 0.72 +0.6
2,148,724 + HUW76_10255 0.72 -0.5
2,148,724 + HUW76_10255 0.72 -1.9
2,148,724 + HUW76_10255 0.72 -0.9
2,148,724 + HUW76_10255 0.72 +0.6
2,148,732 - HUW76_10255 0.72 +0.7
2,148,732 - HUW76_10255 0.72 -1.3
2,148,732 - HUW76_10255 0.72 -0.3
2,148,732 - HUW76_10255 0.72 +0.6
2,148,732 - HUW76_10255 0.72 -2.7
2,148,732 - HUW76_10255 0.72 -1.2
2,148,732 - HUW76_10255 0.72 +0.8
2,148,732 - HUW76_10255 0.72 +0.4
2,148,732 - HUW76_10255 0.72 +0.1
2,148,732 - HUW76_10255 0.72 -2.8
2,148,732 - HUW76_10255 0.72 -1.0
2,148,732 - HUW76_10255 0.72 -0.9
2,148,732 - HUW76_10255 0.72 -0.9
2,148,772 - HUW76_10255 0.74 +2.0
2,148,785 - HUW76_10255 0.75 +2.6
2,148,787 - HUW76_10255 0.75 -0.8
2,148,937 + HUW76_10255 0.83 +0.5
2,148,937 + HUW76_10255 0.83 +0.0
2,148,937 + HUW76_10255 0.83 -1.0
2,148,937 + HUW76_10255 0.83 +0.4
2,148,945 - HUW76_10255 0.83 -1.9
2,148,945 - HUW76_10255 0.83 +0.2
2,148,945 - HUW76_10255 0.83 +1.4
2,148,945 - HUW76_10255 0.83 -1.7
2,149,033 + HUW76_10255 0.88 +0.1
2,149,402 + HUW76_10260 0.46 +0.1
2,149,513 - HUW76_10260 0.80 -0.2
2,149,569 - -1.2
2,149,569 - +1.9
2,149,582 - -2.5
2,149,582 - -0.1
2,149,632 - +0.9
2,149,732 - +0.7
2,149,782 + +2.3
2,149,782 + -0.3
2,149,789 - -0.5
2,149,789 - -0.8
2,149,891 + HUW76_10265 0.23 +0.2
2,149,906 - HUW76_10265 0.25 -1.5
2,149,929 - HUW76_10265 0.29 +0.2
2,150,074 - HUW76_10265 0.52 -1.4
2,150,074 - HUW76_10265 0.52 -0.4
2,150,095 - HUW76_10265 0.56 +0.3
2,150,406 + -0.6
2,150,407 + -1.5
2,150,484 - -0.2
2,150,511 + HUW76_10270 0.12 -0.9
2,150,511 + HUW76_10270 0.12 +0.8
2,150,511 + HUW76_10270 0.12 +1.2
2,150,514 + HUW76_10270 0.13 -0.7
2,150,521 - HUW76_10270 0.13 -0.1
2,150,528 - HUW76_10270 0.14 -1.0
2,150,528 - HUW76_10270 0.14 +1.1

Or see this region's nucleotide sequence