Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04585

Experiment: G1M3_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04575 and HUW76_04580 are separated by 210 nucleotidesHUW76_04580 and HUW76_04585 overlap by 4 nucleotidesHUW76_04585 and HUW76_04590 are separated by 105 nucleotides HUW76_04575: HUW76_04575 - rRNA maturation RNase YbeY, at 922,500 to 922,991 _04575 HUW76_04580: HUW76_04580 - NUDIX hydrolase, at 923,202 to 923,717 _04580 HUW76_04585: HUW76_04585 - DUF1576 domain-containing protein, at 923,714 to 925,063 _04585 HUW76_04590: HUW76_04590 - murein L,D-transpeptidase catalytic domain family protein, at 925,169 to 926,419 _04590 Position (kb) 923 924 925 926Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 922.980 kb on - strandat 923.062 kb on - strandat 923.158 kb on + strandat 923.197 kb on - strandat 923.197 kb on - strandat 923.197 kb on - strandat 923.197 kb on - strandat 923.207 kb on - strandat 923.207 kb on - strandat 923.302 kb on - strand, within HUW76_04580at 923.302 kb on - strand, within HUW76_04580at 923.327 kb on - strand, within HUW76_04580at 923.327 kb on - strand, within HUW76_04580at 923.327 kb on - strand, within HUW76_04580at 923.327 kb on - strand, within HUW76_04580at 923.332 kb on + strand, within HUW76_04580at 923.393 kb on - strand, within HUW76_04580at 923.454 kb on - strand, within HUW76_04580at 923.454 kb on - strand, within HUW76_04580at 923.454 kb on - strand, within HUW76_04580at 923.483 kb on - strand, within HUW76_04580at 923.494 kb on - strand, within HUW76_04580at 923.495 kb on + strand, within HUW76_04580at 923.495 kb on + strand, within HUW76_04580at 923.525 kb on + strand, within HUW76_04580at 923.544 kb on + strand, within HUW76_04580at 923.549 kb on + strand, within HUW76_04580at 923.549 kb on + strand, within HUW76_04580at 923.557 kb on - strand, within HUW76_04580at 923.557 kb on - strand, within HUW76_04580at 923.557 kb on - strand, within HUW76_04580at 923.567 kb on - strand, within HUW76_04580at 923.567 kb on - strand, within HUW76_04580at 923.672 kb on - strandat 923.672 kb on - strandat 923.917 kb on - strand, within HUW76_04585at 923.917 kb on - strand, within HUW76_04585at 924.012 kb on - strand, within HUW76_04585at 924.022 kb on - strand, within HUW76_04585at 924.022 kb on - strand, within HUW76_04585at 924.064 kb on - strand, within HUW76_04585at 924.106 kb on - strand, within HUW76_04585at 924.106 kb on - strand, within HUW76_04585at 924.128 kb on + strand, within HUW76_04585at 924.128 kb on + strand, within HUW76_04585at 924.128 kb on + strand, within HUW76_04585at 924.128 kb on + strand, within HUW76_04585at 924.136 kb on - strand, within HUW76_04585at 924.136 kb on - strand, within HUW76_04585at 924.136 kb on - strand, within HUW76_04585at 924.136 kb on - strand, within HUW76_04585at 924.138 kb on - strand, within HUW76_04585at 924.138 kb on - strand, within HUW76_04585at 924.240 kb on - strand, within HUW76_04585at 924.389 kb on - strand, within HUW76_04585at 924.389 kb on - strand, within HUW76_04585at 924.389 kb on - strand, within HUW76_04585at 924.462 kb on - strand, within HUW76_04585at 924.462 kb on - strand, within HUW76_04585at 924.464 kb on + strand, within HUW76_04585at 924.468 kb on - strand, within HUW76_04585at 924.472 kb on - strand, within HUW76_04585at 924.497 kb on + strand, within HUW76_04585at 924.512 kb on - strand, within HUW76_04585at 924.512 kb on - strand, within HUW76_04585at 924.544 kb on + strand, within HUW76_04585at 924.544 kb on + strand, within HUW76_04585at 924.552 kb on - strand, within HUW76_04585at 924.552 kb on - strand, within HUW76_04585at 924.552 kb on - strand, within HUW76_04585at 924.609 kb on - strand, within HUW76_04585at 924.609 kb on - strand, within HUW76_04585at 924.645 kb on - strand, within HUW76_04585at 924.700 kb on - strand, within HUW76_04585at 924.700 kb on - strand, within HUW76_04585at 924.809 kb on - strand, within HUW76_04585at 924.894 kb on - strand, within HUW76_04585at 924.904 kb on - strand, within HUW76_04585at 924.904 kb on - strand, within HUW76_04585at 924.916 kb on - strand, within HUW76_04585at 924.916 kb on - strand, within HUW76_04585at 924.941 kb on - strandat 924.976 kb on + strandat 924.976 kb on + strandat 925.012 kb on + strandat 925.020 kb on - strandat 925.056 kb on - strandat 925.056 kb on - strandat 925.523 kb on - strand, within HUW76_04590at 925.573 kb on + strand, within HUW76_04590at 925.586 kb on + strand, within HUW76_04590at 925.586 kb on + strand, within HUW76_04590at 925.621 kb on - strand, within HUW76_04590at 925.809 kb on + strand, within HUW76_04590at 925.809 kb on + strand, within HUW76_04590at 925.814 kb on + strand, within HUW76_04590at 925.814 kb on + strand, within HUW76_04590at 925.824 kb on - strand, within HUW76_04590at 925.837 kb on - strand, within HUW76_04590at 925.837 kb on - strand, within HUW76_04590at 925.908 kb on - strand, within HUW76_04590at 925.908 kb on - strand, within HUW76_04590at 925.908 kb on - strand, within HUW76_04590at 925.912 kb on + strand, within HUW76_04590at 925.913 kb on - strand, within HUW76_04590at 925.913 kb on - strand, within HUW76_04590at 925.913 kb on - strand, within HUW76_04590at 925.913 kb on - strand, within HUW76_04590at 925.913 kb on - strand, within HUW76_04590at 925.953 kb on - strand, within HUW76_04590at 925.973 kb on - strand, within HUW76_04590at 925.974 kb on + strand, within HUW76_04590at 925.974 kb on + strand, within HUW76_04590at 925.974 kb on + strand, within HUW76_04590at 925.974 kb on + strand, within HUW76_04590at 925.982 kb on - strand, within HUW76_04590at 925.982 kb on - strand, within HUW76_04590at 925.982 kb on - strand, within HUW76_04590at 925.982 kb on - strand, within HUW76_04590at 925.992 kb on - strand, within HUW76_04590at 925.992 kb on - strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.022 kb on + strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.030 kb on - strand, within HUW76_04590at 926.031 kb on - strand, within HUW76_04590

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D4
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922,980 - -2.6
923,062 - -2.0
923,158 + -0.0
923,197 - -2.2
923,197 - +0.6
923,197 - +0.4
923,197 - +0.2
923,207 - -0.6
923,207 - -0.4
923,302 - HUW76_04580 0.19 -0.2
923,302 - HUW76_04580 0.19 +1.4
923,327 - HUW76_04580 0.24 +0.1
923,327 - HUW76_04580 0.24 +0.1
923,327 - HUW76_04580 0.24 -1.5
923,327 - HUW76_04580 0.24 -0.7
923,332 + HUW76_04580 0.25 -0.2
923,393 - HUW76_04580 0.37 -0.6
923,454 - HUW76_04580 0.49 +0.6
923,454 - HUW76_04580 0.49 +1.3
923,454 - HUW76_04580 0.49 +0.7
923,483 - HUW76_04580 0.54 -0.6
923,494 - HUW76_04580 0.57 +0.2
923,495 + HUW76_04580 0.57 -0.2
923,495 + HUW76_04580 0.57 -0.5
923,525 + HUW76_04580 0.63 +1.1
923,544 + HUW76_04580 0.66 +0.7
923,549 + HUW76_04580 0.67 -1.5
923,549 + HUW76_04580 0.67 +0.1
923,557 - HUW76_04580 0.69 +1.5
923,557 - HUW76_04580 0.69 -0.0
923,557 - HUW76_04580 0.69 +0.7
923,567 - HUW76_04580 0.71 +1.6
923,567 - HUW76_04580 0.71 -0.9
923,672 - -0.7
923,672 - +0.5
923,917 - HUW76_04585 0.15 -2.4
923,917 - HUW76_04585 0.15 -2.1
924,012 - HUW76_04585 0.22 -4.6
924,022 - HUW76_04585 0.23 -2.7
924,022 - HUW76_04585 0.23 -2.5
924,064 - HUW76_04585 0.26 -3.3
924,106 - HUW76_04585 0.29 -0.3
924,106 - HUW76_04585 0.29 -2.8
924,128 + HUW76_04585 0.31 +1.1
924,128 + HUW76_04585 0.31 -0.3
924,128 + HUW76_04585 0.31 -2.0
924,128 + HUW76_04585 0.31 +1.1
924,136 - HUW76_04585 0.31 -2.3
924,136 - HUW76_04585 0.31 -3.4
924,136 - HUW76_04585 0.31 -3.9
924,136 - HUW76_04585 0.31 -4.3
924,138 - HUW76_04585 0.31 -3.0
924,138 - HUW76_04585 0.31 -1.0
924,240 - HUW76_04585 0.39 -3.6
924,389 - HUW76_04585 0.50 -3.8
924,389 - HUW76_04585 0.50 -3.9
924,389 - HUW76_04585 0.50 -2.1
924,462 - HUW76_04585 0.55 -2.4
924,462 - HUW76_04585 0.55 -2.1
924,464 + HUW76_04585 0.56 +1.1
924,468 - HUW76_04585 0.56 -4.7
924,472 - HUW76_04585 0.56 -2.6
924,497 + HUW76_04585 0.58 -1.6
924,512 - HUW76_04585 0.59 -2.9
924,512 - HUW76_04585 0.59 -2.0
924,544 + HUW76_04585 0.61 -0.2
924,544 + HUW76_04585 0.61 -2.4
924,552 - HUW76_04585 0.62 -3.3
924,552 - HUW76_04585 0.62 -3.9
924,552 - HUW76_04585 0.62 -3.6
924,609 - HUW76_04585 0.66 -2.6
924,609 - HUW76_04585 0.66 -2.8
924,645 - HUW76_04585 0.69 -4.8
924,700 - HUW76_04585 0.73 +0.3
924,700 - HUW76_04585 0.73 -2.5
924,809 - HUW76_04585 0.81 -4.6
924,894 - HUW76_04585 0.87 -1.9
924,904 - HUW76_04585 0.88 -3.2
924,904 - HUW76_04585 0.88 -2.7
924,916 - HUW76_04585 0.89 -1.2
924,916 - HUW76_04585 0.89 -2.2
924,941 - -4.0
924,976 + -2.7
924,976 + -3.3
925,012 + -1.2
925,020 - -3.8
925,056 - -4.2
925,056 - -4.6
925,523 - HUW76_04590 0.28 +0.8
925,573 + HUW76_04590 0.32 -0.2
925,586 + HUW76_04590 0.33 -0.4
925,586 + HUW76_04590 0.33 +0.2
925,621 - HUW76_04590 0.36 -0.0
925,809 + HUW76_04590 0.51 -1.1
925,809 + HUW76_04590 0.51 +1.0
925,814 + HUW76_04590 0.52 +0.7
925,814 + HUW76_04590 0.52 -0.2
925,824 - HUW76_04590 0.52 +0.8
925,837 - HUW76_04590 0.53 +0.2
925,837 - HUW76_04590 0.53 +0.6
925,908 - HUW76_04590 0.59 -1.4
925,908 - HUW76_04590 0.59 +1.0
925,908 - HUW76_04590 0.59 +0.3
925,912 + HUW76_04590 0.59 +0.8
925,913 - HUW76_04590 0.59 +0.2
925,913 - HUW76_04590 0.59 -0.1
925,913 - HUW76_04590 0.59 +1.1
925,913 - HUW76_04590 0.59 +0.5
925,913 - HUW76_04590 0.59 +0.3
925,953 - HUW76_04590 0.63 -0.3
925,973 - HUW76_04590 0.64 +0.4
925,974 + HUW76_04590 0.64 -0.6
925,974 + HUW76_04590 0.64 +0.1
925,974 + HUW76_04590 0.64 +0.3
925,974 + HUW76_04590 0.64 -0.9
925,982 - HUW76_04590 0.65 -0.1
925,982 - HUW76_04590 0.65 -0.4
925,982 - HUW76_04590 0.65 +0.2
925,982 - HUW76_04590 0.65 +0.5
925,992 - HUW76_04590 0.66 -1.0
925,992 - HUW76_04590 0.66 -0.7
926,022 + HUW76_04590 0.68 +0.0
926,022 + HUW76_04590 0.68 -1.0
926,022 + HUW76_04590 0.68 -1.2
926,022 + HUW76_04590 0.68 +0.5
926,022 + HUW76_04590 0.68 -1.3
926,022 + HUW76_04590 0.68 -0.4
926,022 + HUW76_04590 0.68 -2.1
926,030 - HUW76_04590 0.69 +2.7
926,030 - HUW76_04590 0.69 +0.9
926,030 - HUW76_04590 0.69 -0.0
926,030 - HUW76_04590 0.69 -0.2
926,030 - HUW76_04590 0.69 +1.1
926,030 - HUW76_04590 0.69 -0.8
926,030 - HUW76_04590 0.69 -0.6
926,030 - HUW76_04590 0.69 -0.1
926,030 - HUW76_04590 0.69 -3.5
926,030 - HUW76_04590 0.69 +0.9
926,030 - HUW76_04590 0.69 +0.1
926,030 - HUW76_04590 0.69 -1.3
926,030 - HUW76_04590 0.69 -0.9
926,030 - HUW76_04590 0.69 +0.8
926,030 - HUW76_04590 0.69 -0.8
926,030 - HUW76_04590 0.69 +0.1
926,030 - HUW76_04590 0.69 +0.8
926,030 - HUW76_04590 0.69 -0.1
926,030 - HUW76_04590 0.69 +1.5
926,030 - HUW76_04590 0.69 +0.4
926,030 - HUW76_04590 0.69 +0.2
926,030 - HUW76_04590 0.69 -0.1
926,031 - HUW76_04590 0.69 +0.6

Or see this region's nucleotide sequence