Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03595

Experiment: G1M3_D4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03590 and HUW76_03595 are separated by 12 nucleotidesHUW76_03595 and HUW76_03600 are separated by 207 nucleotidesHUW76_03600 and HUW76_03605 are separated by 1 nucleotides HUW76_03590: HUW76_03590 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 717,894 to 718,925 _03590 HUW76_03595: HUW76_03595 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 718,938 to 719,486 _03595 HUW76_03600: HUW76_03600 - exodeoxyribonuclease VII small subunit, at 719,694 to 719,906 _03600 HUW76_03605: HUW76_03605 - polyprenyl synthetase family protein, at 719,908 to 720,801 _03605 Position (kb) 718 719 720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 717.952 kb on + strandat 717.952 kb on + strandat 718.009 kb on + strand, within HUW76_03590at 718.009 kb on + strand, within HUW76_03590at 718.017 kb on - strand, within HUW76_03590at 718.017 kb on - strand, within HUW76_03590at 718.017 kb on - strand, within HUW76_03590at 718.017 kb on - strand, within HUW76_03590at 718.036 kb on - strand, within HUW76_03590at 718.036 kb on - strand, within HUW76_03590at 718.085 kb on + strand, within HUW76_03590at 718.093 kb on - strand, within HUW76_03590at 718.093 kb on - strand, within HUW76_03590at 718.115 kb on + strand, within HUW76_03590at 718.122 kb on + strand, within HUW76_03590at 718.123 kb on - strand, within HUW76_03590at 718.145 kb on + strand, within HUW76_03590at 718.181 kb on + strand, within HUW76_03590at 718.331 kb on + strand, within HUW76_03590at 718.344 kb on - strand, within HUW76_03590at 718.344 kb on - strand, within HUW76_03590at 718.396 kb on + strand, within HUW76_03590at 718.396 kb on + strand, within HUW76_03590at 718.413 kb on + strand, within HUW76_03590at 718.413 kb on + strand, within HUW76_03590at 718.418 kb on + strand, within HUW76_03590at 718.418 kb on + strand, within HUW76_03590at 718.419 kb on - strand, within HUW76_03590at 718.426 kb on - strand, within HUW76_03590at 718.426 kb on - strand, within HUW76_03590at 718.435 kb on + strand, within HUW76_03590at 718.494 kb on - strand, within HUW76_03590at 718.494 kb on - strand, within HUW76_03590at 718.497 kb on + strand, within HUW76_03590at 718.518 kb on + strand, within HUW76_03590at 718.518 kb on + strand, within HUW76_03590at 718.528 kb on + strand, within HUW76_03590at 718.528 kb on + strand, within HUW76_03590at 718.528 kb on + strand, within HUW76_03590at 718.528 kb on + strand, within HUW76_03590at 718.528 kb on + strand, within HUW76_03590at 718.529 kb on + strand, within HUW76_03590at 718.536 kb on - strand, within HUW76_03590at 718.536 kb on - strand, within HUW76_03590at 718.536 kb on - strand, within HUW76_03590at 718.537 kb on - strand, within HUW76_03590at 718.537 kb on - strand, within HUW76_03590at 718.537 kb on - strand, within HUW76_03590at 718.537 kb on - strand, within HUW76_03590at 718.538 kb on + strand, within HUW76_03590at 718.571 kb on - strand, within HUW76_03590at 718.571 kb on - strand, within HUW76_03590at 718.583 kb on + strand, within HUW76_03590at 718.622 kb on + strand, within HUW76_03590at 718.622 kb on + strand, within HUW76_03590at 718.622 kb on + strand, within HUW76_03590at 718.622 kb on + strand, within HUW76_03590at 718.630 kb on - strand, within HUW76_03590at 718.642 kb on + strand, within HUW76_03590at 718.642 kb on + strand, within HUW76_03590at 718.650 kb on - strand, within HUW76_03590at 718.650 kb on - strand, within HUW76_03590at 718.650 kb on - strand, within HUW76_03590at 718.651 kb on - strand, within HUW76_03590at 718.661 kb on - strand, within HUW76_03590at 718.661 kb on - strand, within HUW76_03590at 718.692 kb on - strand, within HUW76_03590at 718.692 kb on - strand, within HUW76_03590at 718.749 kb on + strand, within HUW76_03590at 718.796 kb on + strand, within HUW76_03590at 718.809 kb on + strand, within HUW76_03590at 718.809 kb on + strand, within HUW76_03590at 718.830 kb on + strandat 718.838 kb on - strandat 718.838 kb on - strandat 718.838 kb on - strandat 718.924 kb on + strandat 718.924 kb on + strandat 719.017 kb on + strand, within HUW76_03595at 719.019 kb on + strand, within HUW76_03595at 719.053 kb on + strand, within HUW76_03595at 719.094 kb on - strand, within HUW76_03595at 719.106 kb on - strand, within HUW76_03595at 719.106 kb on - strand, within HUW76_03595at 719.120 kb on - strand, within HUW76_03595at 719.120 kb on - strand, within HUW76_03595at 719.192 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.220 kb on - strand, within HUW76_03595at 719.220 kb on - strand, within HUW76_03595at 719.237 kb on + strand, within HUW76_03595at 719.237 kb on + strand, within HUW76_03595at 719.308 kb on + strand, within HUW76_03595at 719.308 kb on + strand, within HUW76_03595at 719.309 kb on + strand, within HUW76_03595at 719.312 kb on - strand, within HUW76_03595at 719.373 kb on + strand, within HUW76_03595at 719.538 kb on - strandat 719.549 kb on + strandat 719.549 kb on + strandat 719.550 kb on + strandat 719.550 kb on + strandat 719.569 kb on + strandat 719.587 kb on + strandat 719.587 kb on + strandat 719.587 kb on + strandat 719.588 kb on - strandat 719.588 kb on - strandat 719.595 kb on - strandat 719.602 kb on + strandat 719.602 kb on + strandat 719.609 kb on - strandat 719.686 kb on - strandat 719.686 kb on - strandat 719.688 kb on + strandat 719.765 kb on + strand, within HUW76_03600at 719.765 kb on + strand, within HUW76_03600at 719.765 kb on + strand, within HUW76_03600at 719.890 kb on + strandat 720.010 kb on + strand, within HUW76_03605at 720.034 kb on + strand, within HUW76_03605at 720.071 kb on + strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.089 kb on - strand, within HUW76_03605at 720.103 kb on + strand, within HUW76_03605at 720.111 kb on - strand, within HUW76_03605at 720.119 kb on - strand, within HUW76_03605at 720.119 kb on - strand, within HUW76_03605at 720.128 kb on + strand, within HUW76_03605at 720.170 kb on - strand, within HUW76_03605at 720.170 kb on - strand, within HUW76_03605at 720.177 kb on - strand, within HUW76_03605at 720.186 kb on + strand, within HUW76_03605at 720.217 kb on + strand, within HUW76_03605at 720.217 kb on - strand, within HUW76_03605at 720.217 kb on - strand, within HUW76_03605at 720.225 kb on - strand, within HUW76_03605at 720.263 kb on - strand, within HUW76_03605at 720.264 kb on - strand, within HUW76_03605at 720.264 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.425 kb on + strand, within HUW76_03605at 720.425 kb on + strand, within HUW76_03605

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D4
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717,952 + +0.2
717,952 + +0.7
718,009 + HUW76_03590 0.11 +2.3
718,009 + HUW76_03590 0.11 +1.1
718,017 - HUW76_03590 0.12 +1.5
718,017 - HUW76_03590 0.12 -2.6
718,017 - HUW76_03590 0.12 +3.4
718,017 - HUW76_03590 0.12 -0.7
718,036 - HUW76_03590 0.14 -1.6
718,036 - HUW76_03590 0.14 +0.4
718,085 + HUW76_03590 0.19 -0.2
718,093 - HUW76_03590 0.19 -0.3
718,093 - HUW76_03590 0.19 +1.0
718,115 + HUW76_03590 0.21 -1.8
718,122 + HUW76_03590 0.22 +0.3
718,123 - HUW76_03590 0.22 -0.5
718,145 + HUW76_03590 0.24 +0.2
718,181 + HUW76_03590 0.28 +0.5
718,331 + HUW76_03590 0.42 -0.0
718,344 - HUW76_03590 0.44 +1.9
718,344 - HUW76_03590 0.44 -2.0
718,396 + HUW76_03590 0.49 +0.4
718,396 + HUW76_03590 0.49 +0.6
718,413 + HUW76_03590 0.50 -0.8
718,413 + HUW76_03590 0.50 -0.9
718,418 + HUW76_03590 0.51 +1.4
718,418 + HUW76_03590 0.51 +0.4
718,419 - HUW76_03590 0.51 -0.4
718,426 - HUW76_03590 0.52 -0.3
718,426 - HUW76_03590 0.52 +1.3
718,435 + HUW76_03590 0.52 -0.3
718,494 - HUW76_03590 0.58 +1.3
718,494 - HUW76_03590 0.58 +0.9
718,497 + HUW76_03590 0.58 -0.3
718,518 + HUW76_03590 0.60 -0.6
718,518 + HUW76_03590 0.60 +1.5
718,528 + HUW76_03590 0.61 -3.5
718,528 + HUW76_03590 0.61 -0.9
718,528 + HUW76_03590 0.61 -0.0
718,528 + HUW76_03590 0.61 -1.0
718,528 + HUW76_03590 0.61 +0.5
718,529 + HUW76_03590 0.62 +0.0
718,536 - HUW76_03590 0.62 -0.3
718,536 - HUW76_03590 0.62 +1.1
718,536 - HUW76_03590 0.62 +1.3
718,537 - HUW76_03590 0.62 +0.6
718,537 - HUW76_03590 0.62 +0.8
718,537 - HUW76_03590 0.62 +0.5
718,537 - HUW76_03590 0.62 +1.7
718,538 + HUW76_03590 0.62 +0.1
718,571 - HUW76_03590 0.66 +0.2
718,571 - HUW76_03590 0.66 -0.2
718,583 + HUW76_03590 0.67 +0.8
718,622 + HUW76_03590 0.71 +0.6
718,622 + HUW76_03590 0.71 -0.5
718,622 + HUW76_03590 0.71 +0.4
718,622 + HUW76_03590 0.71 +2.1
718,630 - HUW76_03590 0.71 +0.6
718,642 + HUW76_03590 0.72 +1.2
718,642 + HUW76_03590 0.72 +1.2
718,650 - HUW76_03590 0.73 +1.4
718,650 - HUW76_03590 0.73 -0.4
718,650 - HUW76_03590 0.73 -1.4
718,651 - HUW76_03590 0.73 -2.3
718,661 - HUW76_03590 0.74 +0.0
718,661 - HUW76_03590 0.74 +0.5
718,692 - HUW76_03590 0.77 +0.1
718,692 - HUW76_03590 0.77 +1.9
718,749 + HUW76_03590 0.83 +0.8
718,796 + HUW76_03590 0.87 +1.1
718,809 + HUW76_03590 0.89 +0.0
718,809 + HUW76_03590 0.89 -0.2
718,830 + +0.3
718,838 - -0.2
718,838 - -1.7
718,838 - -2.6
718,924 + +0.4
718,924 + -2.2
719,017 + HUW76_03595 0.14 -2.4
719,019 + HUW76_03595 0.15 -4.5
719,053 + HUW76_03595 0.21 -0.5
719,094 - HUW76_03595 0.28 -2.4
719,106 - HUW76_03595 0.31 +0.6
719,106 - HUW76_03595 0.31 -2.2
719,120 - HUW76_03595 0.33 +0.6
719,120 - HUW76_03595 0.33 -1.4
719,192 + HUW76_03595 0.46 -2.8
719,212 + HUW76_03595 0.50 -1.6
719,212 + HUW76_03595 0.50 +0.0
719,212 + HUW76_03595 0.50 -0.5
719,212 + HUW76_03595 0.50 -1.5
719,212 + HUW76_03595 0.50 -2.1
719,212 + HUW76_03595 0.50 +0.2
719,212 + HUW76_03595 0.50 -2.7
719,212 + HUW76_03595 0.50 -2.7
719,212 + HUW76_03595 0.50 -0.7
719,212 + HUW76_03595 0.50 -2.4
719,212 + HUW76_03595 0.50 -0.6
719,212 + HUW76_03595 0.50 -2.0
719,212 + HUW76_03595 0.50 -2.0
719,220 - HUW76_03595 0.51 -1.7
719,220 - HUW76_03595 0.51 +0.1
719,237 + HUW76_03595 0.54 -1.6
719,237 + HUW76_03595 0.54 -0.8
719,308 + HUW76_03595 0.67 -1.8
719,308 + HUW76_03595 0.67 +0.1
719,309 + HUW76_03595 0.68 -0.8
719,312 - HUW76_03595 0.68 -2.2
719,373 + HUW76_03595 0.79 -0.3
719,538 - +1.0
719,549 + -0.0
719,549 + -1.4
719,550 + -2.2
719,550 + -0.4
719,569 + +2.4
719,587 + +0.3
719,587 + +0.3
719,587 + -2.8
719,588 - -0.3
719,588 - -1.9
719,595 - -0.5
719,602 + +0.2
719,602 + -2.0
719,609 - -0.6
719,686 - -0.0
719,686 - +0.3
719,688 + -0.5
719,765 + HUW76_03600 0.33 -1.4
719,765 + HUW76_03600 0.33 -2.7
719,765 + HUW76_03600 0.33 -0.2
719,890 + +0.3
720,010 + HUW76_03605 0.11 +0.1
720,034 + HUW76_03605 0.14 +0.5
720,071 + HUW76_03605 0.18 -1.1
720,079 - HUW76_03605 0.19 +0.6
720,079 - HUW76_03605 0.19 +0.9
720,079 - HUW76_03605 0.19 -1.1
720,089 - HUW76_03605 0.20 -1.4
720,103 + HUW76_03605 0.22 -0.5
720,111 - HUW76_03605 0.23 -1.8
720,119 - HUW76_03605 0.24 -1.6
720,119 - HUW76_03605 0.24 -1.1
720,128 + HUW76_03605 0.25 -1.0
720,170 - HUW76_03605 0.29 +0.2
720,170 - HUW76_03605 0.29 -2.5
720,177 - HUW76_03605 0.30 +1.0
720,186 + HUW76_03605 0.31 -0.4
720,217 + HUW76_03605 0.35 -0.0
720,217 - HUW76_03605 0.35 +2.2
720,217 - HUW76_03605 0.35 +0.4
720,225 - HUW76_03605 0.35 +1.1
720,263 - HUW76_03605 0.40 -1.4
720,264 - HUW76_03605 0.40 -0.9
720,264 - HUW76_03605 0.40 -1.7
720,316 - HUW76_03605 0.46 -1.8
720,316 - HUW76_03605 0.46 +0.6
720,316 - HUW76_03605 0.46 -1.0
720,316 - HUW76_03605 0.46 +0.1
720,316 - HUW76_03605 0.46 +1.0
720,316 - HUW76_03605 0.46 -1.3
720,425 + HUW76_03605 0.58 -0.9
720,425 + HUW76_03605 0.58 -2.6

Or see this region's nucleotide sequence