Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09530

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09520 and LRK53_RS09525 are separated by 132 nucleotidesLRK53_RS09525 and LRK53_RS09530 are separated by 57 nucleotidesLRK53_RS09530 and LRK53_RS09535 are separated by 168 nucleotides LRK53_RS09520: LRK53_RS09520 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 2,142,987 to 2,143,955 _RS09520 LRK53_RS09525: LRK53_RS09525 - RNA chaperone Hfq, at 2,144,088 to 2,144,384 _RS09525 LRK53_RS09530: LRK53_RS09530 - GTPase HflX, at 2,144,442 to 2,145,743 _RS09530 LRK53_RS09535: LRK53_RS09535 - FtsH protease activity modulator HflK, at 2,145,912 to 2,146,982 _RS09535 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.910 kb on - strandat 2143.997 kb on + strandat 2143.997 kb on + strandat 2143.998 kb on - strandat 2144.011 kb on + strandat 2144.011 kb on + strandat 2144.012 kb on - strandat 2144.012 kb on - strandat 2144.290 kb on + strand, within LRK53_RS09525at 2144.290 kb on + strand, within LRK53_RS09525at 2144.290 kb on + strand, within LRK53_RS09525at 2144.290 kb on + strand, within LRK53_RS09525at 2144.290 kb on + strand, within LRK53_RS09525at 2144.385 kb on + strandat 2144.385 kb on + strandat 2144.386 kb on - strandat 2144.386 kb on - strandat 2144.386 kb on - strandat 2144.493 kb on - strandat 2144.493 kb on - strandat 2144.510 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.567 kb on - strandat 2144.610 kb on + strand, within LRK53_RS09530at 2144.610 kb on + strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.854 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.989 kb on + strand, within LRK53_RS09530at 2144.990 kb on - strand, within LRK53_RS09530at 2144.990 kb on - strand, within LRK53_RS09530at 2144.990 kb on - strand, within LRK53_RS09530at 2144.990 kb on - strand, within LRK53_RS09530at 2144.990 kb on - strand, within LRK53_RS09530at 2145.060 kb on + strand, within LRK53_RS09530at 2145.061 kb on - strand, within LRK53_RS09530at 2145.061 kb on - strand, within LRK53_RS09530at 2145.114 kb on + strand, within LRK53_RS09530at 2145.114 kb on + strand, within LRK53_RS09530at 2145.724 kb on + strandat 2145.724 kb on + strandat 2145.724 kb on + strandat 2145.724 kb on + strandat 2145.724 kb on + strandat 2145.724 kb on + strandat 2145.725 kb on - strandat 2145.725 kb on - strandat 2145.725 kb on - strandat 2145.725 kb on - strandat 2145.769 kb on + strandat 2145.770 kb on - strandat 2145.770 kb on - strandat 2145.770 kb on - strandat 2145.770 kb on - strandat 2145.770 kb on - strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.843 kb on + strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.844 kb on - strandat 2145.898 kb on + strandat 2145.898 kb on + strandat 2145.898 kb on + strandat 2145.899 kb on - strandat 2146.021 kb on + strand, within LRK53_RS09535at 2146.021 kb on + strand, within LRK53_RS09535at 2146.022 kb on - strand, within LRK53_RS09535at 2146.022 kb on - strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.101 kb on + strand, within LRK53_RS09535at 2146.102 kb on - strand, within LRK53_RS09535at 2146.102 kb on - strand, within LRK53_RS09535at 2146.102 kb on - strand, within LRK53_RS09535at 2146.102 kb on - strand, within LRK53_RS09535at 2146.102 kb on - strand, within LRK53_RS09535at 2146.152 kb on + strand, within LRK53_RS09535at 2146.152 kb on + strand, within LRK53_RS09535at 2146.308 kb on + strand, within LRK53_RS09535at 2146.308 kb on + strand, within LRK53_RS09535at 2146.308 kb on + strand, within LRK53_RS09535at 2146.308 kb on + strand, within LRK53_RS09535at 2146.308 kb on + strand, within LRK53_RS09535at 2146.309 kb on - strand, within LRK53_RS09535at 2146.309 kb on - strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.332 kb on + strand, within LRK53_RS09535at 2146.333 kb on - strand, within LRK53_RS09535at 2146.333 kb on - strand, within LRK53_RS09535at 2146.333 kb on - strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.494 kb on + strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.495 kb on - strand, within LRK53_RS09535at 2146.627 kb on - strand, within LRK53_RS09535at 2146.627 kb on - strand, within LRK53_RS09535at 2146.692 kb on + strand, within LRK53_RS09535at 2146.692 kb on + strand, within LRK53_RS09535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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2,143,909 + -1.5
2,143,909 + -0.2
2,143,909 + +0.2
2,143,909 + -1.7
2,143,909 + -1.9
2,143,909 + -2.1
2,143,910 - -0.7
2,143,997 + -1.2
2,143,997 + -1.0
2,143,998 - -0.1
2,144,011 + -0.1
2,144,011 + -1.7
2,144,012 - -0.9
2,144,012 - +1.9
2,144,290 + LRK53_RS09525 0.68 -0.1
2,144,290 + LRK53_RS09525 0.68 -1.2
2,144,290 + LRK53_RS09525 0.68 +1.9
2,144,290 + LRK53_RS09525 0.68 -0.1
2,144,290 + LRK53_RS09525 0.68 -1.1
2,144,385 + -1.1
2,144,385 + -1.1
2,144,386 - -1.2
2,144,386 - -0.1
2,144,386 - -1.2
2,144,493 - -1.4
2,144,493 - -1.1
2,144,510 + -1.0
2,144,566 + -0.1
2,144,566 + -0.1
2,144,566 + -2.1
2,144,566 + -2.1
2,144,566 + -1.9
2,144,567 - -0.5
2,144,610 + LRK53_RS09530 0.13 -0.9
2,144,610 + LRK53_RS09530 0.13 -0.7
2,144,611 - LRK53_RS09530 0.13 -3.0
2,144,611 - LRK53_RS09530 0.13 -1.0
2,144,611 - LRK53_RS09530 0.13 -1.8
2,144,613 + LRK53_RS09530 0.13 -1.1
2,144,613 + LRK53_RS09530 0.13 -0.8
2,144,613 + LRK53_RS09530 0.13 +0.9
2,144,613 + LRK53_RS09530 0.13 -1.5
2,144,613 + LRK53_RS09530 0.13 -1.5
2,144,613 + LRK53_RS09530 0.13 -1.7
2,144,613 + LRK53_RS09530 0.13 -1.4
2,144,613 + LRK53_RS09530 0.13 -0.7
2,144,613 + LRK53_RS09530 0.13 -0.7
2,144,613 + LRK53_RS09530 0.13 -0.3
2,144,613 + LRK53_RS09530 0.13 -0.1
2,144,613 + LRK53_RS09530 0.13 +0.1
2,144,613 + LRK53_RS09530 0.13 +0.9
2,144,613 + LRK53_RS09530 0.13 -1.1
2,144,613 + LRK53_RS09530 0.13 -0.7
2,144,613 + LRK53_RS09530 0.13 -2.7
2,144,613 + LRK53_RS09530 0.13 -1.5
2,144,613 + LRK53_RS09530 0.13 +0.9
2,144,613 + LRK53_RS09530 0.13 -1.1
2,144,613 + LRK53_RS09530 0.13 -1.7
2,144,613 + LRK53_RS09530 0.13 -1.4
2,144,613 + LRK53_RS09530 0.13 -0.4
2,144,613 + LRK53_RS09530 0.13 -1.1
2,144,613 + LRK53_RS09530 0.13 +0.0
2,144,613 + LRK53_RS09530 0.13 -0.1
2,144,614 - LRK53_RS09530 0.13 -2.1
2,144,614 - LRK53_RS09530 0.13 -1.1
2,144,614 - LRK53_RS09530 0.13 -1.1
2,144,614 - LRK53_RS09530 0.13 -2.1
2,144,614 - LRK53_RS09530 0.13 -0.1
2,144,614 - LRK53_RS09530 0.13 -0.1
2,144,614 - LRK53_RS09530 0.13 +0.3
2,144,614 - LRK53_RS09530 0.13 +0.9
2,144,614 - LRK53_RS09530 0.13 -2.0
2,144,614 - LRK53_RS09530 0.13 -1.4
2,144,614 - LRK53_RS09530 0.13 +0.6
2,144,854 + LRK53_RS09530 0.32 -1.7
2,144,989 + LRK53_RS09530 0.42 -0.7
2,144,989 + LRK53_RS09530 0.42 +0.3
2,144,989 + LRK53_RS09530 0.42 -0.1
2,144,989 + LRK53_RS09530 0.42 -0.1
2,144,989 + LRK53_RS09530 0.42 -0.7
2,144,989 + LRK53_RS09530 0.42 -1.8
2,144,989 + LRK53_RS09530 0.42 -0.1
2,144,989 + LRK53_RS09530 0.42 -0.7
2,144,989 + LRK53_RS09530 0.42 -1.1
2,144,989 + LRK53_RS09530 0.42 -1.1
2,144,989 + LRK53_RS09530 0.42 -2.3
2,144,989 + LRK53_RS09530 0.42 -0.4
2,144,989 + LRK53_RS09530 0.42 -2.1
2,144,990 - LRK53_RS09530 0.42 -1.9
2,144,990 - LRK53_RS09530 0.42 -0.4
2,144,990 - LRK53_RS09530 0.42 -1.1
2,144,990 - LRK53_RS09530 0.42 -1.1
2,144,990 - LRK53_RS09530 0.42 -0.3
2,145,060 + LRK53_RS09530 0.47 -1.9
2,145,061 - LRK53_RS09530 0.48 +0.3
2,145,061 - LRK53_RS09530 0.48 -1.0
2,145,114 + LRK53_RS09530 0.52 -1.2
2,145,114 + LRK53_RS09530 0.52 -0.1
2,145,724 + -0.7
2,145,724 + +0.9
2,145,724 + +0.5
2,145,724 + -0.6
2,145,724 + +1.2
2,145,724 + +0.0
2,145,725 - -0.7
2,145,725 - -0.3
2,145,725 - -0.1
2,145,725 - -0.4
2,145,769 + -0.9
2,145,770 - -0.1
2,145,770 - -0.1
2,145,770 - -1.2
2,145,770 - -0.7
2,145,770 - -0.1
2,145,843 + -0.9
2,145,843 + +1.5
2,145,843 + -0.7
2,145,843 + -1.1
2,145,843 + -1.1
2,145,843 + +0.7
2,145,843 + -0.1
2,145,843 + +0.9
2,145,843 + -1.7
2,145,843 + -1.2
2,145,843 + -0.6
2,145,843 + -1.7
2,145,843 + +0.9
2,145,844 - -1.7
2,145,844 - -0.1
2,145,844 - -0.2
2,145,844 - -1.8
2,145,844 - -0.3
2,145,844 - -2.1
2,145,844 - -1.4
2,145,898 + -0.7
2,145,898 + -2.1
2,145,898 + -1.2
2,145,899 - -1.1
2,146,021 + LRK53_RS09535 0.10 -0.7
2,146,021 + LRK53_RS09535 0.10 -0.4
2,146,022 - LRK53_RS09535 0.10 -1.7
2,146,022 - LRK53_RS09535 0.10 -2.2
2,146,101 + LRK53_RS09535 0.18 -1.0
2,146,101 + LRK53_RS09535 0.18 -1.5
2,146,101 + LRK53_RS09535 0.18 -0.4
2,146,101 + LRK53_RS09535 0.18 -1.1
2,146,101 + LRK53_RS09535 0.18 -3.2
2,146,101 + LRK53_RS09535 0.18 +0.3
2,146,101 + LRK53_RS09535 0.18 -1.8
2,146,101 + LRK53_RS09535 0.18 +0.3
2,146,101 + LRK53_RS09535 0.18 -0.4
2,146,101 + LRK53_RS09535 0.18 -0.7
2,146,101 + LRK53_RS09535 0.18 -1.1
2,146,101 + LRK53_RS09535 0.18 -0.7
2,146,101 + LRK53_RS09535 0.18 -2.1
2,146,102 - LRK53_RS09535 0.18 -1.9
2,146,102 - LRK53_RS09535 0.18 -0.7
2,146,102 - LRK53_RS09535 0.18 -1.1
2,146,102 - LRK53_RS09535 0.18 -1.1
2,146,102 - LRK53_RS09535 0.18 -1.1
2,146,152 + LRK53_RS09535 0.22 -0.8
2,146,152 + LRK53_RS09535 0.22 -1.4
2,146,308 + LRK53_RS09535 0.37 -0.3
2,146,308 + LRK53_RS09535 0.37 -1.8
2,146,308 + LRK53_RS09535 0.37 -1.8
2,146,308 + LRK53_RS09535 0.37 -1.7
2,146,308 + LRK53_RS09535 0.37 -0.1
2,146,309 - LRK53_RS09535 0.37 -0.7
2,146,309 - LRK53_RS09535 0.37 -1.2
2,146,332 + LRK53_RS09535 0.39 -0.7
2,146,332 + LRK53_RS09535 0.39 -0.9
2,146,332 + LRK53_RS09535 0.39 -2.4
2,146,332 + LRK53_RS09535 0.39 -1.5
2,146,332 + LRK53_RS09535 0.39 -1.5
2,146,332 + LRK53_RS09535 0.39 -1.7
2,146,332 + LRK53_RS09535 0.39 -4.1
2,146,332 + LRK53_RS09535 0.39 -3.4
2,146,332 + LRK53_RS09535 0.39 +0.5
2,146,332 + LRK53_RS09535 0.39 -0.7
2,146,332 + LRK53_RS09535 0.39 -2.2
2,146,332 + LRK53_RS09535 0.39 +0.9
2,146,333 - LRK53_RS09535 0.39 +1.9
2,146,333 - LRK53_RS09535 0.39 +0.3
2,146,333 - LRK53_RS09535 0.39 -0.1
2,146,494 + LRK53_RS09535 0.54 -2.4
2,146,494 + LRK53_RS09535 0.54 -1.4
2,146,494 + LRK53_RS09535 0.54 -1.0
2,146,494 + LRK53_RS09535 0.54 -0.4
2,146,494 + LRK53_RS09535 0.54 -0.7
2,146,494 + LRK53_RS09535 0.54 -1.1
2,146,495 - LRK53_RS09535 0.54 -1.7
2,146,495 - LRK53_RS09535 0.54 -1.2
2,146,495 - LRK53_RS09535 0.54 -0.9
2,146,495 - LRK53_RS09535 0.54 -1.9
2,146,495 - LRK53_RS09535 0.54 -0.7
2,146,495 - LRK53_RS09535 0.54 -1.7
2,146,495 - LRK53_RS09535 0.54 -1.4
2,146,495 - LRK53_RS09535 0.54 -1.4
2,146,627 - LRK53_RS09535 0.67 -0.7
2,146,627 - LRK53_RS09535 0.67 +1.9
2,146,692 + LRK53_RS09535 0.73 -0.1
2,146,692 + LRK53_RS09535 0.73 -2.0

Or see this region's nucleotide sequence