Experiment: G1M1_D4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04155 and HUW76_04160 are separated by 291 nucleotides HUW76_04160 and HUW76_04165 are separated by 200 nucleotides HUW76_04165 and HUW76_04170 are separated by 227 nucleotides
HUW76_04155: HUW76_04155 - cysteine synthase A, at 833,849 to 834,769
_04155
HUW76_04160: HUW76_04160 - hypothetical protein, at 835,061 to 835,516
_04160
HUW76_04165: HUW76_04165 - DUF445 family protein, at 835,717 to 836,319
_04165
HUW76_04170: HUW76_04170 - Holliday junction branch migration DNA helicase RuvB, at 836,547 to 837,545
_04170
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 834.852 kb on - strand at 834.854 kb on + strand at 834.962 kb on - strand at 834.972 kb on - strand at 835.037 kb on - strand at 835.118 kb on + strand, within HUW76_04160 at 835.278 kb on + strand, within HUW76_04160 at 835.510 kb on - strand at 835.590 kb on + strand at 835.590 kb on + strand at 835.690 kb on + strand at 835.690 kb on + strand at 835.725 kb on + strand at 835.841 kb on + strand, within HUW76_04165 at 835.841 kb on + strand, within HUW76_04165 at 835.841 kb on + strand, within HUW76_04165 at 835.910 kb on + strand, within HUW76_04165 at 835.967 kb on + strand, within HUW76_04165 at 835.967 kb on + strand, within HUW76_04165 at 835.981 kb on + strand, within HUW76_04165 at 835.981 kb on + strand, within HUW76_04165 at 835.992 kb on + strand, within HUW76_04165 at 835.992 kb on + strand, within HUW76_04165 at 836.037 kb on + strand, within HUW76_04165 at 836.037 kb on + strand, within HUW76_04165 at 836.250 kb on + strand, within HUW76_04165 at 836.263 kb on + strand at 836.282 kb on + strand at 836.530 kb on + strand at 836.530 kb on + strand at 836.531 kb on + strand at 836.531 kb on + strand at 836.542 kb on + strand at 836.554 kb on + strand at 836.554 kb on + strand at 836.627 kb on + strand at 836.888 kb on + strand, within HUW76_04170 at 836.891 kb on + strand, within HUW76_04170 at 836.891 kb on + strand, within HUW76_04170 at 836.891 kb on + strand, within HUW76_04170 at 836.896 kb on + strand, within HUW76_04170 at 837.044 kb on + strand, within HUW76_04170 at 837.045 kb on + strand, within HUW76_04170 at 837.045 kb on + strand, within HUW76_04170 at 837.058 kb on + strand, within HUW76_04170 at 837.058 kb on + strand, within HUW76_04170 at 837.058 kb on + strand, within HUW76_04170 at 837.058 kb on + strand, within HUW76_04170 at 837.058 kb on + strand, within HUW76_04170 at 837.155 kb on + strand, within HUW76_04170 at 837.264 kb on + strand, within HUW76_04170 at 837.264 kb on + strand, within HUW76_04170 at 837.264 kb on + strand, within HUW76_04170
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D4 remove 834,852 - -0.7 834,854 + +0.1 834,962 - -2.9 834,972 - -0.5 835,037 - -0.1 835,118 + HUW76_04160 0.12 +1.0 835,278 + HUW76_04160 0.48 -0.4 835,510 - -0.3 835,590 + +1.9 835,590 + +2.7 835,690 + +2.5 835,690 + +2.9 835,725 + +3.5 835,841 + HUW76_04165 0.21 +1.9 835,841 + HUW76_04165 0.21 +3.0 835,841 + HUW76_04165 0.21 +0.5 835,910 + HUW76_04165 0.32 +2.7 835,967 + HUW76_04165 0.41 +3.1 835,967 + HUW76_04165 0.41 +3.8 835,981 + HUW76_04165 0.44 +3.7 835,981 + HUW76_04165 0.44 +3.4 835,992 + HUW76_04165 0.46 +3.1 835,992 + HUW76_04165 0.46 +1.1 836,037 + HUW76_04165 0.53 +3.3 836,037 + HUW76_04165 0.53 +3.6 836,250 + HUW76_04165 0.88 +2.3 836,263 + +3.6 836,282 + +2.5 836,530 + +0.7 836,530 + +0.7 836,531 + -1.4 836,531 + -1.3 836,542 + -2.4 836,554 + -1.6 836,554 + +1.4 836,627 + -2.4 836,888 + HUW76_04170 0.34 -1.2 836,891 + HUW76_04170 0.34 +0.9 836,891 + HUW76_04170 0.34 +0.9 836,891 + HUW76_04170 0.34 -2.5 836,896 + HUW76_04170 0.35 -0.3 837,044 + HUW76_04170 0.50 -0.9 837,045 + HUW76_04170 0.50 -1.8 837,045 + HUW76_04170 0.50 -1.4 837,058 + HUW76_04170 0.51 +1.5 837,058 + HUW76_04170 0.51 +1.7 837,058 + HUW76_04170 0.51 -0.7 837,058 + HUW76_04170 0.51 -1.6 837,058 + HUW76_04170 0.51 -1.5 837,155 + HUW76_04170 0.61 -2.1 837,264 + HUW76_04170 0.72 -1.9 837,264 + HUW76_04170 0.72 -0.9 837,264 + HUW76_04170 0.72 -0.4
Or see this region's nucleotide sequence