Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00605 and LRK53_RS00610 are separated by 314 nucleotides LRK53_RS00610 and LRK53_RS00615 overlap by 1 nucleotides
LRK53_RS00605: LRK53_RS00605 - cytochrome P450, at 136,110 to 137,261
_RS00605
LRK53_RS00610: LRK53_RS00610 - LytTR family DNA-binding domain-containing protein, at 137,576 to 138,280
_RS00610
LRK53_RS00615: LRK53_RS00615 - histidine kinase, at 138,280 to 139,332
_RS00615
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 136.636 kb on + strand, within LRK53_RS00605 at 136.636 kb on + strand, within LRK53_RS00605 at 136.636 kb on + strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.637 kb on - strand, within LRK53_RS00605 at 136.677 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.073 kb on + strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.074 kb on - strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.085 kb on + strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.086 kb on - strand, within LRK53_RS00605 at 137.259 kb on + strand at 137.259 kb on + strand at 137.259 kb on + strand at 137.259 kb on + strand at 137.260 kb on - strand at 137.329 kb on - strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.480 kb on + strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.481 kb on - strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.532 kb on + strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.533 kb on - strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.540 kb on + strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.541 kb on - strand at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.820 kb on + strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.821 kb on - strand, within LRK53_RS00610 at 137.898 kb on + strand, within LRK53_RS00610 at 137.898 kb on + strand, within LRK53_RS00610 at 137.899 kb on - strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.991 kb on + strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 137.992 kb on - strand, within LRK53_RS00610 at 138.036 kb on + strand, within LRK53_RS00610 at 138.362 kb on + strand at 138.362 kb on + strand at 138.368 kb on + strand at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.650 kb on + strand, within LRK53_RS00615 at 138.651 kb on - strand, within LRK53_RS00615 at 138.651 kb on - strand, within LRK53_RS00615 at 138.826 kb on - strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.874 kb on + strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.875 kb on - strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.896 kb on + strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.897 kb on - strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.902 kb on + strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 138.903 kb on - strand, within LRK53_RS00615 at 139.068 kb on - strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.169 kb on + strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615 at 139.170 kb on - strand, within LRK53_RS00615
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 136,636 + LRK53_RS00605 0.46 -2.6 136,636 + LRK53_RS00605 0.46 +0.1 136,636 + LRK53_RS00605 0.46 +0.1 136,637 - LRK53_RS00605 0.46 +1.1 136,637 - LRK53_RS00605 0.46 -0.9 136,637 - LRK53_RS00605 0.46 +1.1 136,637 - LRK53_RS00605 0.46 -2.2 136,637 - LRK53_RS00605 0.46 -2.7 136,637 - LRK53_RS00605 0.46 -1.2 136,637 - LRK53_RS00605 0.46 +0.1 136,677 + LRK53_RS00605 0.49 +0.1 137,073 + LRK53_RS00605 0.84 -1.0 137,073 + LRK53_RS00605 0.84 +1.1 137,073 + LRK53_RS00605 0.84 +0.7 137,073 + LRK53_RS00605 0.84 -1.5 137,073 + LRK53_RS00605 0.84 -0.5 137,073 + LRK53_RS00605 0.84 -0.1 137,073 + LRK53_RS00605 0.84 -1.2 137,073 + LRK53_RS00605 0.84 -0.5 137,074 - LRK53_RS00605 0.84 +0.8 137,074 - LRK53_RS00605 0.84 -0.9 137,074 - LRK53_RS00605 0.84 +0.5 137,074 - LRK53_RS00605 0.84 -1.1 137,074 - LRK53_RS00605 0.84 -1.5 137,074 - LRK53_RS00605 0.84 -1.5 137,074 - LRK53_RS00605 0.84 +1.1 137,074 - LRK53_RS00605 0.84 +0.1 137,074 - LRK53_RS00605 0.84 +1.5 137,074 - LRK53_RS00605 0.84 -1.5 137,074 - LRK53_RS00605 0.84 +1.1 137,074 - LRK53_RS00605 0.84 -0.7 137,074 - LRK53_RS00605 0.84 +1.1 137,074 - LRK53_RS00605 0.84 -1.8 137,074 - LRK53_RS00605 0.84 -1.0 137,074 - LRK53_RS00605 0.84 -0.5 137,074 - LRK53_RS00605 0.84 +1.1 137,085 + LRK53_RS00605 0.85 -0.9 137,085 + LRK53_RS00605 0.85 -0.3 137,085 + LRK53_RS00605 0.85 +0.7 137,085 + LRK53_RS00605 0.85 +0.1 137,085 + LRK53_RS00605 0.85 +1.1 137,085 + LRK53_RS00605 0.85 -0.6 137,086 - LRK53_RS00605 0.85 -0.3 137,086 - LRK53_RS00605 0.85 -1.9 137,086 - LRK53_RS00605 0.85 -1.1 137,259 + +0.1 137,259 + -1.1 137,259 + -0.5 137,259 + -0.5 137,260 - -1.4 137,329 - +3.4 137,480 + -0.5 137,480 + +0.8 137,480 + +0.9 137,480 + -1.2 137,480 + -0.6 137,480 + -0.6 137,481 - +0.1 137,481 - -0.5 137,481 - -0.5 137,481 - -0.9 137,481 - -2.4 137,481 - -1.1 137,481 - -0.8 137,481 - -1.1 137,532 + -0.5 137,532 + -1.6 137,532 + -0.5 137,532 + +0.5 137,532 + -2.1 137,532 + -1.7 137,532 + +1.1 137,532 + +2.1 137,532 + +2.1 137,532 + -0.8 137,532 + -0.9 137,532 + +1.1 137,532 + -0.5 137,532 + -3.0 137,532 + -1.7 137,533 - -1.2 137,533 - +2.1 137,533 - -1.0 137,533 - +1.5 137,533 - -2.0 137,533 - -1.1 137,533 - -0.9 137,533 - -0.3 137,533 - +1.1 137,533 - -1.3 137,533 - +0.1 137,533 - +0.1 137,533 - -0.7 137,533 - -0.2 137,533 - -0.5 137,540 + -0.1 137,540 + +0.2 137,540 + -1.0 137,540 + +0.1 137,540 + -1.7 137,540 + +0.1 137,540 + +1.1 137,541 - +0.5 137,541 - -1.2 137,541 - +1.5 137,541 - +1.5 137,541 - +1.0 137,541 - -1.2 137,820 + LRK53_RS00610 0.35 -0.1 137,820 + LRK53_RS00610 0.35 -1.9 137,820 + LRK53_RS00610 0.35 -0.1 137,820 + LRK53_RS00610 0.35 +0.1 137,820 + LRK53_RS00610 0.35 -0.1 137,820 + LRK53_RS00610 0.35 -0.9 137,820 + LRK53_RS00610 0.35 -1.3 137,820 + LRK53_RS00610 0.35 -0.5 137,820 + LRK53_RS00610 0.35 -0.5 137,820 + LRK53_RS00610 0.35 +0.1 137,820 + LRK53_RS00610 0.35 -1.2 137,821 - LRK53_RS00610 0.35 -0.7 137,821 - LRK53_RS00610 0.35 +1.1 137,821 - LRK53_RS00610 0.35 -1.7 137,821 - LRK53_RS00610 0.35 -1.2 137,821 - LRK53_RS00610 0.35 -2.1 137,821 - LRK53_RS00610 0.35 -0.8 137,821 - LRK53_RS00610 0.35 -1.2 137,821 - LRK53_RS00610 0.35 -1.0 137,821 - LRK53_RS00610 0.35 -0.5 137,821 - LRK53_RS00610 0.35 -0.8 137,821 - LRK53_RS00610 0.35 -1.5 137,821 - LRK53_RS00610 0.35 -3.1 137,898 + LRK53_RS00610 0.46 +0.1 137,898 + LRK53_RS00610 0.46 -1.3 137,899 - LRK53_RS00610 0.46 +0.7 137,991 + LRK53_RS00610 0.59 +0.1 137,991 + LRK53_RS00610 0.59 -0.7 137,991 + LRK53_RS00610 0.59 +0.1 137,992 - LRK53_RS00610 0.59 +0.1 137,992 - LRK53_RS00610 0.59 -1.6 137,992 - LRK53_RS00610 0.59 -1.2 138,036 + LRK53_RS00610 0.65 -0.8 138,362 + +0.6 138,362 + -1.5 138,368 + -1.2 138,650 + LRK53_RS00615 0.35 -0.1 138,650 + LRK53_RS00615 0.35 -0.0 138,650 + LRK53_RS00615 0.35 -0.2 138,650 + LRK53_RS00615 0.35 -1.0 138,651 - LRK53_RS00615 0.35 +0.8 138,651 - LRK53_RS00615 0.35 +0.8 138,826 - LRK53_RS00615 0.52 -0.2 138,874 + LRK53_RS00615 0.56 -1.6 138,874 + LRK53_RS00615 0.56 -0.5 138,874 + LRK53_RS00615 0.56 +0.4 138,875 - LRK53_RS00615 0.57 +0.1 138,875 - LRK53_RS00615 0.57 +0.1 138,875 - LRK53_RS00615 0.57 -0.2 138,896 + LRK53_RS00615 0.58 -2.2 138,896 + LRK53_RS00615 0.58 +0.1 138,896 + LRK53_RS00615 0.58 +0.5 138,896 + LRK53_RS00615 0.58 -0.9 138,897 - LRK53_RS00615 0.59 -0.8 138,897 - LRK53_RS00615 0.59 +0.7 138,897 - LRK53_RS00615 0.59 -1.5 138,897 - LRK53_RS00615 0.59 -1.2 138,897 - LRK53_RS00615 0.59 -1.6 138,897 - LRK53_RS00615 0.59 -0.5 138,902 + LRK53_RS00615 0.59 +0.1 138,902 + LRK53_RS00615 0.59 +0.7 138,902 + LRK53_RS00615 0.59 -1.5 138,903 - LRK53_RS00615 0.59 -0.2 138,903 - LRK53_RS00615 0.59 -0.9 138,903 - LRK53_RS00615 0.59 -1.4 138,903 - LRK53_RS00615 0.59 -0.5 139,068 - LRK53_RS00615 0.75 +1.7 139,169 + LRK53_RS00615 0.84 +1.1 139,169 + LRK53_RS00615 0.84 -1.3 139,169 + LRK53_RS00615 0.84 -1.8 139,170 - LRK53_RS00615 0.85 +0.1 139,170 - LRK53_RS00615 0.85 -0.2 139,170 - LRK53_RS00615 0.85 -0.0
Or see this region's nucleotide sequence