Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18965

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18955 and LRK53_RS18960 are separated by 103 nucleotidesLRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotidesLRK53_RS18965 and LRK53_RS18970 overlap by 4 nucleotides LRK53_RS18955: LRK53_RS18955 - hypothetical protein, at 185,110 to 185,745 _RS18955 LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130 _RS18960 LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907 _RS18965 LRK53_RS18970: LRK53_RS18970 - site-specific DNA-methyltransferase, at 186,904 to 188,163 _RS18970 Position (kb) 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.340 kb on + strand, within LRK53_RS18955at 185.341 kb on - strand, within LRK53_RS18955at 185.353 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.580 kb on - strand, within LRK53_RS18955at 185.743 kb on + strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.811 kb on + strandat 185.812 kb on - strandat 185.921 kb on + strand, within LRK53_RS18960at 186.065 kb on + strand, within LRK53_RS18960at 186.128 kb on + strandat 186.128 kb on + strandat 186.129 kb on - strandat 186.129 kb on - strandat 186.193 kb on + strandat 186.284 kb on + strand, within LRK53_RS18965at 186.284 kb on + strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.494 kb on + strand, within LRK53_RS18965at 186.495 kb on - strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.781 kb on - strand, within LRK53_RS18965at 186.781 kb on - strand, within LRK53_RS18965at 186.926 kb on + strandat 186.961 kb on + strandat 186.961 kb on + strandat 186.962 kb on - strandat 187.041 kb on + strand, within LRK53_RS18970at 187.041 kb on + strand, within LRK53_RS18970at 187.041 kb on + strand, within LRK53_RS18970at 187.042 kb on - strand, within LRK53_RS18970at 187.117 kb on - strand, within LRK53_RS18970at 187.384 kb on + strand, within LRK53_RS18970at 187.384 kb on + strand, within LRK53_RS18970at 187.384 kb on + strand, within LRK53_RS18970at 187.385 kb on - strand, within LRK53_RS18970at 187.385 kb on - strand, within LRK53_RS18970at 187.504 kb on + strand, within LRK53_RS18970at 187.504 kb on + strand, within LRK53_RS18970at 187.505 kb on - strand, within LRK53_RS18970at 187.505 kb on - strand, within LRK53_RS18970at 187.505 kb on - strand, within LRK53_RS18970at 187.505 kb on - strand, within LRK53_RS18970at 187.505 kb on - strand, within LRK53_RS18970at 187.772 kb on - strand, within LRK53_RS18970at 187.848 kb on + strand, within LRK53_RS18970at 187.848 kb on + strand, within LRK53_RS18970

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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185,285 + LRK53_RS18955 0.28 -1.5
185,285 + LRK53_RS18955 0.28 -0.9
185,285 + LRK53_RS18955 0.28 +0.7
185,285 + LRK53_RS18955 0.28 -0.6
185,285 + LRK53_RS18955 0.28 -1.5
185,286 - LRK53_RS18955 0.28 +0.6
185,286 - LRK53_RS18955 0.28 +0.5
185,286 - LRK53_RS18955 0.28 -1.3
185,286 - LRK53_RS18955 0.28 -1.5
185,286 - LRK53_RS18955 0.28 -0.4
185,286 - LRK53_RS18955 0.28 +1.1
185,286 - LRK53_RS18955 0.28 -1.2
185,286 - LRK53_RS18955 0.28 +0.1
185,286 - LRK53_RS18955 0.28 -1.6
185,286 - LRK53_RS18955 0.28 -2.1
185,286 - LRK53_RS18955 0.28 -1.3
185,340 + LRK53_RS18955 0.36 -1.5
185,341 - LRK53_RS18955 0.36 -1.9
185,353 + LRK53_RS18955 0.38 +1.1
185,404 + LRK53_RS18955 0.46 -1.9
185,404 + LRK53_RS18955 0.46 -0.6
185,404 + LRK53_RS18955 0.46 +0.2
185,404 + LRK53_RS18955 0.46 -0.9
185,405 - LRK53_RS18955 0.46 -0.5
185,405 - LRK53_RS18955 0.46 -1.8
185,405 - LRK53_RS18955 0.46 -1.2
185,405 - LRK53_RS18955 0.46 +0.3
185,405 - LRK53_RS18955 0.46 +0.8
185,405 - LRK53_RS18955 0.46 -0.3
185,580 - LRK53_RS18955 0.74 -0.9
185,743 + -1.2
185,744 - -0.4
185,744 - -1.0
185,811 + +0.1
185,812 - -0.4
185,921 + LRK53_RS18960 0.26 -0.5
186,065 + LRK53_RS18960 0.77 +0.3
186,128 + -1.7
186,128 + -1.3
186,129 - +0.1
186,129 - +1.1
186,193 + -1.5
186,284 + LRK53_RS18965 0.11 -1.9
186,284 + LRK53_RS18965 0.11 -1.9
186,285 - LRK53_RS18965 0.11 -0.5
186,285 - LRK53_RS18965 0.11 -1.1
186,285 - LRK53_RS18965 0.11 +0.5
186,285 - LRK53_RS18965 0.11 -0.4
186,285 - LRK53_RS18965 0.11 +0.6
186,363 + LRK53_RS18965 0.22 -1.3
186,363 + LRK53_RS18965 0.22 -0.9
186,363 + LRK53_RS18965 0.22 -2.3
186,363 + LRK53_RS18965 0.22 +0.5
186,363 + LRK53_RS18965 0.22 -1.3
186,364 - LRK53_RS18965 0.22 -1.3
186,364 - LRK53_RS18965 0.22 -1.1
186,364 - LRK53_RS18965 0.22 -0.5
186,364 - LRK53_RS18965 0.22 -1.1
186,364 - LRK53_RS18965 0.22 -1.7
186,364 - LRK53_RS18965 0.22 -0.9
186,364 - LRK53_RS18965 0.22 -0.7
186,494 + LRK53_RS18965 0.41 -2.8
186,495 - LRK53_RS18965 0.41 -0.4
186,605 + LRK53_RS18965 0.57 -0.9
186,605 + LRK53_RS18965 0.57 -0.2
186,605 + LRK53_RS18965 0.57 +1.8
186,605 + LRK53_RS18965 0.57 -0.5
186,605 + LRK53_RS18965 0.57 -0.7
186,605 + LRK53_RS18965 0.57 -1.9
186,605 + LRK53_RS18965 0.57 -1.5
186,605 + LRK53_RS18965 0.57 -0.3
186,605 + LRK53_RS18965 0.57 -0.9
186,605 + LRK53_RS18965 0.57 +0.6
186,605 + LRK53_RS18965 0.57 -2.1
186,605 + LRK53_RS18965 0.57 -0.1
186,605 + LRK53_RS18965 0.57 -1.4
186,605 + LRK53_RS18965 0.57 -2.3
186,605 + LRK53_RS18965 0.57 -1.3
186,605 + LRK53_RS18965 0.57 -1.1
186,605 + LRK53_RS18965 0.57 -2.6
186,605 + LRK53_RS18965 0.57 +0.3
186,605 + LRK53_RS18965 0.57 +2.1
186,605 + LRK53_RS18965 0.57 -3.2
186,605 + LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 -1.3
186,606 - LRK53_RS18965 0.57 +0.1
186,606 - LRK53_RS18965 0.57 -1.7
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -2.6
186,606 - LRK53_RS18965 0.57 +1.1
186,606 - LRK53_RS18965 0.57 -1.5
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 +0.5
186,606 - LRK53_RS18965 0.57 +0.1
186,606 - LRK53_RS18965 0.57 -0.9
186,606 - LRK53_RS18965 0.57 -1.0
186,606 - LRK53_RS18965 0.57 -0.7
186,606 - LRK53_RS18965 0.57 -0.5
186,606 - LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 -1.5
186,606 - LRK53_RS18965 0.57 +0.1
186,725 + LRK53_RS18965 0.74 +2.1
186,725 + LRK53_RS18965 0.74 -1.7
186,725 + LRK53_RS18965 0.74 -1.1
186,725 + LRK53_RS18965 0.74 -0.5
186,726 - LRK53_RS18965 0.74 -2.0
186,726 - LRK53_RS18965 0.74 -0.7
186,781 - LRK53_RS18965 0.82 -0.5
186,781 - LRK53_RS18965 0.82 -1.1
186,926 + -0.5
186,961 + -1.5
186,961 + -1.4
186,962 - -0.7
187,041 + LRK53_RS18970 0.11 -2.1
187,041 + LRK53_RS18970 0.11 -1.5
187,041 + LRK53_RS18970 0.11 +0.6
187,042 - LRK53_RS18970 0.11 -0.3
187,117 - LRK53_RS18970 0.17 -0.4
187,384 + LRK53_RS18970 0.38 -0.4
187,384 + LRK53_RS18970 0.38 -0.1
187,384 + LRK53_RS18970 0.38 +0.3
187,385 - LRK53_RS18970 0.38 -0.5
187,385 - LRK53_RS18970 0.38 -2.3
187,504 + LRK53_RS18970 0.48 -2.6
187,504 + LRK53_RS18970 0.48 -3.6
187,505 - LRK53_RS18970 0.48 -0.9
187,505 - LRK53_RS18970 0.48 -0.4
187,505 - LRK53_RS18970 0.48 -1.7
187,505 - LRK53_RS18970 0.48 -0.1
187,505 - LRK53_RS18970 0.48 -0.7
187,772 - LRK53_RS18970 0.69 -0.2
187,848 + LRK53_RS18970 0.75 -0.3
187,848 + LRK53_RS18970 0.75 -0.8

Or see this region's nucleotide sequence